data_3VWJ # _model_server_result.job_id Zl8TTXOoauhxgPifppWIUA _model_server_result.datetime_utc '2024-11-23 20:28:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3vwj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":303}' # _entry.id 3VWJ # _exptl.entry_id 3VWJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 770.131 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (11Z,14E)-N-[(2S,3S,4R)-1-(alpha-D-galactopyranosyloxy)-3,4-dihydroxyoctadecan-2-yl]icosa-11,14-dienamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3VWJ _cell.length_a 145.93 _cell.length_b 176.91 _cell.length_c 82.95 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3VWJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 21 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 103 A CYS 102 1_555 A SG CYS 167 A CYS 166 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf2 A SG CYS 207 A CYS 206 1_555 A SG CYS 262 A CYS 261 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf3 B SG CYS 25 B CYS 25 1_555 B SG CYS 80 B CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf4 C SG CYS 24 C CYS 22 1_555 C SG CYS 91 C CYS 90 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf5 C SG CYS 138 C CYS 139 1_555 C SG CYS 188 C CYS 189 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf6 C SG CYS 163 C CYS 164 1_555 D SG CYS 173 D CYS 174 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf7 D SG CYS 24 D CYS 23 1_555 D SG CYS 92 D CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf8 D SG CYS 147 D CYS 148 1_555 D SG CYS 212 D CYS 213 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? covale ? covale1 A ND2 ASN 21 A ASN 20 1_555 E C1 NAG . A NAG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale2 A ND2 ASN 43 A ASN 42 1_555 F C1 NAG . A NAG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.449 ? metalc ? metalc1 D OD2 ASP 31 D ASP 30 1_555 H MG MG . D MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.957 ? # _chem_comp.formula 'C44 H83 N O9' _chem_comp.formula_weight 770.131 _chem_comp.id DB3 _chem_comp.mon_nstd_flag . _chem_comp.name (11Z,14E)-N-[(2S,3S,4R)-1-(alpha-D-galactopyranosyloxy)-3,4-dihydroxyoctadecan-2-yl]icosa-11,14-dienamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 DB3 sing 83 n n C1 O1A DB3 sing 84 n n C2 N2 DB3 sing 85 n n C2 C3 DB3 sing 86 n n N2 CAA DB3 sing 87 n n C3 O3 DB3 sing 88 n n C3 C4 DB3 sing 89 n n C4 O4 DB3 sing 90 n n C4 C5 DB3 sing 91 n n C5 C6 DB3 sing 92 n n C6 C7 DB3 sing 93 n n C7 C8 DB3 sing 94 n n C8 C9 DB3 sing 95 n n C9 C10 DB3 sing 96 n n C10 C11 DB3 sing 97 n n C11 C12 DB3 sing 98 n n C12 C13 DB3 sing 99 n n C13 C14 DB3 sing 100 n n C14 C15 DB3 sing 101 n n C15 C16 DB3 sing 102 n n C16 C17 DB3 sing 103 n n C17 C18 DB3 sing 104 n n C1A O1A DB3 sing 105 n n C1A C2A DB3 sing 106 n n C1A O6A DB3 sing 107 n n C2A O2A DB3 sing 108 n n C2A C3A DB3 sing 109 n n C3A O3A DB3 sing 110 n n C3A C4A DB3 sing 111 n n C4A O4A DB3 sing 112 n n C4A C5M DB3 sing 113 n n O5A C6A DB3 sing 114 n n C5M C6A DB3 sing 115 n n C5M O6A DB3 sing 116 n n CAA OAA DB3 doub 117 n n CAA CAB DB3 sing 118 n n CAB CAC DB3 sing 119 n n CAC CAD DB3 sing 120 n n CAD CAE DB3 sing 121 n n CAE CAF DB3 sing 122 n n CAF CAG DB3 sing 123 n n CAG CAH DB3 sing 124 n n CAH CAI DB3 sing 125 n n CAI CAJ DB3 sing 126 n n CAJ CAK DB3 sing 127 n n CAK CAL DB3 doub 128 n n CAL CAM DB3 sing 129 n n CAM CAN DB3 sing 130 n n CAN CAO DB3 doub 131 n n CAO CAP DB3 sing 132 n n CAP CAQ DB3 sing 133 n n CAQ CAR DB3 sing 134 n n CAR CAS DB3 sing 135 n n CAS CAT DB3 sing 136 n n C1 H1 DB3 sing 137 n n C1 H1A DB3 sing 138 n n C2 H2 DB3 sing 139 n n N2 HN2 DB3 sing 140 n n C3 H3 DB3 sing 141 n n O3 HO3 DB3 sing 142 n n C4 H4 DB3 sing 143 n n O4 HO4 DB3 sing 144 n n C5 H5 DB3 sing 145 n n C5 H5A DB3 sing 146 n n C6 H6 DB3 sing 147 n n C6 H6A DB3 sing 148 n n C7 H7 DB3 sing 149 n n C7 H7A DB3 sing 150 n n C8 H8 DB3 sing 151 n n C8 H8A DB3 sing 152 n n C9 H9 DB3 sing 153 n n C9 H9A DB3 sing 154 n n C10 H10 DB3 sing 155 n n C10 H10A DB3 sing 156 n n C11 H11 DB3 sing 157 n n C11 H11A DB3 sing 158 n n C12 H12 DB3 sing 159 n n C12 H12A DB3 sing 160 n n C13 H13 DB3 sing 161 n n C13 H13A DB3 sing 162 n n C14 H14 DB3 sing 163 n n C14 H14A DB3 sing 164 n n C15 H15 DB3 sing 165 n n C15 H15A DB3 sing 166 n n C16 H16 DB3 sing 167 n n C16 H16A DB3 sing 168 n n C17 H17 DB3 sing 169 n n C17 H17A DB3 sing 170 n n C18 H18 DB3 sing 171 n n C18 H18A DB3 sing 172 n n C18 H18B DB3 sing 173 n n C1A H1AA DB3 sing 174 n n C2A H2A DB3 sing 175 n n O2A HO2A DB3 sing 176 n n C3A H3A DB3 sing 177 n n O3A HO3A DB3 sing 178 n n C4A H4A DB3 sing 179 n n O4A HO4A DB3 sing 180 n n O5A HO5A DB3 sing 181 n n C5M H5M DB3 sing 182 n n C6A H6AA DB3 sing 183 n n C6A H6AB DB3 sing 184 n n CAB HAB DB3 sing 185 n n CAB HABA DB3 sing 186 n n CAC HAC DB3 sing 187 n n CAC HACA DB3 sing 188 n n CAD HAD DB3 sing 189 n n CAD HADA DB3 sing 190 n n CAE HAE DB3 sing 191 n n CAE HAEA DB3 sing 192 n n CAF HAF DB3 sing 193 n n CAF HAFA DB3 sing 194 z n CAG HAG DB3 sing 195 n n CAG HAGA DB3 sing 196 n n CAH HAH DB3 sing 197 n n CAH HAHA DB3 sing 198 n n CAI HAI DB3 sing 199 n n CAI HAIA DB3 sing 200 n n CAJ HAJ DB3 sing 201 e n CAJ HAJA DB3 sing 202 n n CAK HAK DB3 sing 203 n n CAL HAL DB3 sing 204 n n CAM HAM DB3 sing 205 n n CAM HAMA DB3 sing 206 n n CAN HAN DB3 sing 207 n n CAO HAO DB3 sing 208 n n CAP HAP DB3 sing 209 n n CAP HAPA DB3 sing 210 n n CAQ HAQ DB3 sing 211 n n CAQ HAQA DB3 sing 212 n n CAR HAR DB3 sing 213 n n CAR HARA DB3 sing 214 n n CAS HAS DB3 sing 215 n n CAS HASA DB3 sing 216 n n CAT HAT DB3 sing 217 n n CAT HATA DB3 sing 218 n n CAT HATB DB3 sing 219 n n # _atom_sites.entry_id 3VWJ _atom_sites.fract_transf_matrix[1][1] 0.006853 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005653 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012055 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 5 NAG A 1 301 400 NAG NAG . F 5 NAG A 1 302 314 NAG NAG . G 6 DB3 A 1 303 1 DB3 DB3 . H 7 MG D 1 301 1 MG MG . I 8 HOH A 1 401 1 HOH HOH . I 8 HOH A 2 402 4 HOH HOH . I 8 HOH A 3 403 28 HOH HOH . J 8 HOH B 1 101 9 HOH HOH . J 8 HOH B 2 102 12 HOH HOH . J 8 HOH B 3 103 20 HOH HOH . J 8 HOH B 4 104 26 HOH HOH . J 8 HOH B 5 105 33 HOH HOH . J 8 HOH B 6 106 36 HOH HOH . K 8 HOH C 1 301 34 HOH HOH . K 8 HOH C 2 302 42 HOH HOH . L 8 HOH D 1 401 3 HOH HOH . L 8 HOH D 2 402 8 HOH HOH . L 8 HOH D 3 403 11 HOH HOH . L 8 HOH D 4 404 18 HOH HOH . L 8 HOH D 5 405 23 HOH HOH . L 8 HOH D 6 406 30 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 DB3 . . . G 6 -15.921 33.353 -14.592 1 48.93 ? C1 DB3 303 A 1 HETATM 2 C C2 DB3 . . . G 6 -16.82 33.221 -13.368 1 48.71 ? C2 DB3 303 A 1 HETATM 3 N N2 DB3 . . . G 6 -17.436 31.908 -13.462 1 49.4 ? N2 DB3 303 A 1 HETATM 4 C C3 DB3 . . . G 6 -17.956 34.234 -13.453 1 48.2 ? C3 DB3 303 A 1 HETATM 5 O O3 DB3 . . . G 6 -17.42 35.558 -13.319 1 48.28 ? O3 DB3 303 A 1 HETATM 6 C C4 DB3 . . . G 6 -19.027 34.026 -12.389 1 47.46 ? C4 DB3 303 A 1 HETATM 7 O O4 DB3 . . . G 6 -19.796 35.23 -12.29 1 47.43 ? O4 DB3 303 A 1 HETATM 8 C C5 DB3 . . . G 6 -18.426 33.709 -11.026 1 46.99 ? C5 DB3 303 A 1 HETATM 9 C C6 DB3 . . . G 6 -19.432 33.964 -9.91 1 46.61 ? C6 DB3 303 A 1 HETATM 10 C C7 DB3 . . . G 6 -20.693 33.122 -10.071 1 46.04 ? C7 DB3 303 A 1 HETATM 11 C C8 DB3 . . . G 6 -20.621 31.862 -9.217 1 45.11 ? C8 DB3 303 A 1 HETATM 12 C C9 DB3 . . . G 6 -21.939 31.635 -8.487 1 43.98 ? C9 DB3 303 A 1 HETATM 13 C C10 DB3 . . . G 6 -22.352 32.899 -7.746 1 43.36 ? C10 DB3 303 A 1 HETATM 14 C C11 DB3 . . . G 6 -23.636 32.667 -6.963 1 43.3 ? C11 DB3 303 A 1 HETATM 15 C C12 DB3 . . . G 6 -24.316 33.989 -6.626 1 42.97 ? C12 DB3 303 A 1 HETATM 16 C C13 DB3 . . . G 6 -23.436 34.851 -5.731 1 42.4 ? C13 DB3 303 A 1 HETATM 17 C C14 DB3 . . . G 6 -23.902 36.299 -5.747 1 42.09 ? C14 DB3 303 A 1 HETATM 18 C C15 DB3 . . . G 6 -25.352 36.431 -5.297 1 42.2 ? C15 DB3 303 A 1 HETATM 19 C C16 DB3 . . . G 6 -25.734 37.9 -5.147 1 42.26 ? C16 DB3 303 A 1 HETATM 20 C C17 DB3 . . . G 6 -24.731 38.639 -4.265 1 41.79 ? C17 DB3 303 A 1 HETATM 21 C C18 DB3 . . . G 6 -25.205 40.04 -3.961 1 41.55 ? C18 DB3 303 A 1 HETATM 22 C C1A DB3 . . . G 6 -16.233 34.354 -16.728 1 49.74 ? C1A DB3 303 A 1 HETATM 23 O O1A DB3 . . . G 6 -16.747 33.448 -15.749 1 49.41 ? O1A DB3 303 A 1 HETATM 24 C C2A DB3 . . . G 6 -17.31 34.667 -17.761 1 49.9 ? C2A DB3 303 A 1 HETATM 25 O O2A DB3 . . . G 6 -18.494 35.121 -17.097 1 50.34 ? O2A DB3 303 A 1 HETATM 26 C C3A DB3 . . . G 6 -17.637 33.429 -18.574 1 49.79 ? C3A DB3 303 A 1 HETATM 27 O O3A DB3 . . . G 6 -18.593 33.753 -19.586 1 49.73 ? O3A DB3 303 A 1 HETATM 28 C C4A DB3 . . . G 6 -16.364 32.926 -19.22 1 50.03 ? C4A DB3 303 A 1 HETATM 29 O O4A DB3 . . . G 6 -15.863 33.927 -20.103 1 49.72 ? O4A DB3 303 A 1 HETATM 30 O O5A DB3 . . . G 6 -12.909 32.296 -17.953 1 53.47 ? O5A DB3 303 A 1 HETATM 31 C C5M DB3 . . . G 6 -15.303 32.653 -18.168 1 50.91 ? C5M DB3 303 A 1 HETATM 32 C C6A DB3 . . . G 6 -14.007 32.272 -18.873 1 52.52 ? C6A DB3 303 A 1 HETATM 33 O O6A DB3 . . . G 6 -15.071 33.805 -17.354 1 50.24 ? O6A DB3 303 A 1 HETATM 34 C CAA DB3 . . . G 6 -16.759 30.833 -13.07 1 50.59 ? CAA DB3 303 A 1 HETATM 35 O OAA DB3 . . . G 6 -15.625 30.899 -12.631 1 50.96 ? OAA DB3 303 A 1 HETATM 36 C CAB DB3 . . . G 6 -17.442 29.492 -13.183 1 51.58 ? CAB DB3 303 A 1 HETATM 37 C CAC DB3 . . . G 6 -16.885 28.58 -12.095 1 52.71 ? CAC DB3 303 A 1 HETATM 38 C CAD DB3 . . . G 6 -17.946 27.626 -11.559 1 54.09 ? CAD DB3 303 A 1 HETATM 39 C CAE DB3 . . . G 6 -17.367 26.673 -10.517 1 55.5 ? CAE DB3 303 A 1 HETATM 40 C CAF DB3 . . . G 6 -16.607 27.431 -9.433 1 56.83 ? CAF DB3 303 A 1 HETATM 41 C CAG DB3 . . . G 6 -16.395 26.583 -8.182 1 57.85 ? CAG DB3 303 A 1 HETATM 42 C CAH DB3 . . . G 6 -17.721 26.318 -7.477 1 58.71 ? CAH DB3 303 A 1 HETATM 43 C CAI DB3 . . . G 6 -17.799 27.027 -6.128 1 59.38 ? CAI DB3 303 A 1 HETATM 44 C CAJ DB3 . . . G 6 -16.874 26.364 -5.113 1 59.8 ? CAJ DB3 303 A 1 HETATM 45 C CAK DB3 . . . G 6 -17.055 26.975 -3.74 1 60.3 ? CAK DB3 303 A 1 HETATM 46 C CAL DB3 . . . G 6 -16.298 26.532 -2.741 1 60.74 ? CAL DB3 303 A 1 HETATM 47 C CAM DB3 . . . G 6 -15.304 25.441 -3.054 1 61.18 ? CAM DB3 303 A 1 HETATM 48 C CAN DB3 . . . G 6 -14.262 25.294 -1.973 1 61.26 ? CAN DB3 303 A 1 HETATM 49 C CAO DB3 . . . G 6 -13.27 24.438 -2.198 1 60.76 ? CAO DB3 303 A 1 HETATM 50 C CAP DB3 . . . G 6 -12.17 24.202 -1.195 1 60.24 ? CAP DB3 303 A 1 HETATM 51 C CAQ DB3 . . . G 6 -11.235 23.157 -1.789 1 60.11 ? CAQ DB3 303 A 1 HETATM 52 C CAR DB3 . . . G 6 -12.038 22.014 -2.407 1 59.78 ? CAR DB3 303 A 1 HETATM 53 C CAS DB3 . . . G 6 -11.146 20.999 -3.113 1 59.23 ? CAS DB3 303 A 1 HETATM 54 C CAT DB3 . . . G 6 -11.963 19.826 -3.607 1 58.88 ? CAT DB3 303 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 222 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 54 #