data_3VXV # _model_server_result.job_id Sr-V7gOKsIv2vnLFzsM5gA _model_server_result.datetime_utc '2024-11-30 04:10:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3vxv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":205}' # _entry.id 3VXV # _exptl.entry_id 3VXV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3VXV _cell.length_a 89.074 _cell.length_b 94.989 _cell.length_c 54.738 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3VXV _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 F N N ? 5 G N N ? 5 H N N ? 5 I N N ? 5 J N N ? 5 L N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 8 A CYS 75 1_555 A SG CYS 8 A CYS 75 3_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? covale ? covale1 B O3' DC 8 B DC 8 1_555 B P 5CM 9 B 5CM 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.603 ? covale ? covale2 B O3' 5CM 9 B 5CM 9 1_555 B P DG 10 B DG 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.608 ? hydrog WATSON-CRICK hydrog1 B N1 DG 1 B DG 1 1_555 C N3 DC 13 C DC 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 B N2 DG 1 B DG 1 1_555 C O2 DC 13 C DC 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 B O6 DG 1 B DG 1 1_555 C N4 DC 13 C DC 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 B N3 DT 2 B DT 2 1_555 C N1 DA 12 C DA 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 B O4 DT 2 B DT 2 1_555 C N6 DA 12 C DA 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 B N3 DC 3 B DC 3 1_555 C N1 DG 11 C DG 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 B N4 DC 3 B DC 3 1_555 C O6 DG 11 C DG 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 B O2 DC 3 B DC 3 1_555 C N2 DG 11 C DG 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 B N1 DA 4 B DA 4 1_555 C N3 DT 10 C DT 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 B N6 DA 4 B DA 4 1_555 C O4 DT 10 C DT 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 B N3 DC 5 B DC 5 1_555 C N1 DG 9 C DG 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 B N4 DC 5 B DC 5 1_555 C O6 DG 9 C DG 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 B O2 DC 5 B DC 5 1_555 C N2 DG 9 C DG 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 B N3 DT 6 B DT 6 1_555 C N1 DA 8 C DA 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 B O4 DT 6 B DT 6 1_555 C N6 DA 8 C DA 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog16 B N1 DA 7 B DA 7 1_555 C N3 DT 7 C DT 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog17 B N6 DA 7 B DA 7 1_555 C O4 DT 7 C DT 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog18 B N3 DC 8 B DC 8 1_555 C N1 DG 6 C DG 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog19 B N4 DC 8 B DC 8 1_555 C O6 DG 6 C DG 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog20 B O2 DC 8 B DC 8 1_555 C N2 DG 6 C DG 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog21 B N3 5CM 9 B 5CM 9 1_555 C N1 DG 5 C DG 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog22 B N4 5CM 9 B 5CM 9 1_555 C O6 DG 5 C DG 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog23 B O2 5CM 9 B 5CM 9 1_555 C N2 DG 5 C DG 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_28_PAIR hydrog24 B N1 DG 10 B DG 10 1_555 C O2 DT 4 C DT 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_28_PAIR hydrog25 B O6 DG 10 B DG 10 1_555 C N3 DT 4 C DT 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog26 B N1 DG 11 B DG 11 1_555 C N3 DC 3 C DC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog27 B N2 DG 11 B DG 11 1_555 C O2 DC 3 C DC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog28 B O6 DG 11 B DG 11 1_555 C N4 DC 3 C DC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog29 B N1 DA 12 B DA 12 1_555 C N3 DT 2 C DT 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog30 B N6 DA 12 B DA 12 1_555 C O4 DT 2 C DT 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog31 B N3 DC 13 B DC 13 1_555 C N1 DG 1 C DG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog32 B N4 DC 13 B DC 13 1_555 C O6 DG 1 C DG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog33 B O2 DC 13 B DC 13 1_555 C N2 DG 1 C DG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 276 n n C1 C2 EDO sing 277 n n C1 H11 EDO sing 278 n n C1 H12 EDO sing 279 n n O1 HO1 EDO sing 280 n n C2 O2 EDO sing 281 n n C2 H21 EDO sing 282 n n C2 H22 EDO sing 283 n n O2 HO2 EDO sing 284 n n # _atom_sites.entry_id 3VXV _atom_sites.fract_transf_matrix[1][1] 0.011227 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010528 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018269 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 ACT A 1 201 2 ACT ACT . E 4 ACT A 1 202 3 ACT ACT . F 5 EDO A 1 203 11 EDO EDO . G 5 EDO A 1 204 12 EDO EDO . H 5 EDO A 1 205 13 EDO EDO . I 5 EDO A 1 206 14 EDO EDO . J 5 EDO A 1 207 21 EDO EDO . K 4 ACT B 1 101 1 ACT ACT . L 5 EDO C 1 101 19 EDO EDO . M 6 HOH A 1 301 2 HOH HOH . M 6 HOH A 2 302 3 HOH HOH . M 6 HOH A 3 303 4 HOH HOH . M 6 HOH A 4 304 6 HOH HOH . M 6 HOH A 5 305 7 HOH HOH . M 6 HOH A 6 306 8 HOH HOH . M 6 HOH A 7 307 10 HOH HOH . M 6 HOH A 8 308 12 HOH HOH . M 6 HOH A 9 309 14 HOH HOH . M 6 HOH A 10 310 15 HOH HOH . M 6 HOH A 11 311 18 HOH HOH . M 6 HOH A 12 312 19 HOH HOH . M 6 HOH A 13 313 23 HOH HOH . M 6 HOH A 14 314 26 HOH HOH . M 6 HOH A 15 315 29 HOH HOH . M 6 HOH A 16 316 36 HOH HOH . M 6 HOH A 17 317 39 HOH HOH . M 6 HOH A 18 318 42 HOH HOH . M 6 HOH A 19 319 43 HOH HOH . M 6 HOH A 20 320 46 HOH HOH . M 6 HOH A 21 321 48 HOH HOH . M 6 HOH A 22 322 49 HOH HOH . M 6 HOH A 23 323 50 HOH HOH . M 6 HOH A 24 324 53 HOH HOH . M 6 HOH A 25 325 57 HOH HOH . M 6 HOH A 26 326 60 HOH HOH . M 6 HOH A 27 327 63 HOH HOH . M 6 HOH A 28 328 69 HOH HOH . M 6 HOH A 29 329 70 HOH HOH . M 6 HOH A 30 330 71 HOH HOH . M 6 HOH A 31 331 75 HOH HOH . M 6 HOH A 32 332 80 HOH HOH . M 6 HOH A 33 333 81 HOH HOH . M 6 HOH A 34 334 82 HOH HOH . M 6 HOH A 35 335 91 HOH HOH . M 6 HOH A 36 336 96 HOH HOH . M 6 HOH A 37 337 97 HOH HOH . M 6 HOH A 38 338 99 HOH HOH . M 6 HOH A 39 339 100 HOH HOH . M 6 HOH A 40 340 101 HOH HOH . M 6 HOH A 41 341 102 HOH HOH . M 6 HOH A 42 342 105 HOH HOH . M 6 HOH A 43 343 106 HOH HOH . M 6 HOH A 44 344 107 HOH HOH . M 6 HOH A 45 345 112 HOH HOH . M 6 HOH A 46 346 117 HOH HOH . M 6 HOH A 47 347 123 HOH HOH . M 6 HOH A 48 348 126 HOH HOH . M 6 HOH A 49 349 129 HOH HOH . M 6 HOH A 50 350 130 HOH HOH . M 6 HOH A 51 351 131 HOH HOH . M 6 HOH A 52 352 133 HOH HOH . M 6 HOH A 53 353 137 HOH HOH . M 6 HOH A 54 354 139 HOH HOH . M 6 HOH A 55 355 141 HOH HOH . M 6 HOH A 56 356 143 HOH HOH . M 6 HOH A 57 357 144 HOH HOH . M 6 HOH A 58 358 148 HOH HOH . M 6 HOH A 59 359 149 HOH HOH . M 6 HOH A 60 360 151 HOH HOH . M 6 HOH A 61 361 152 HOH HOH . M 6 HOH A 62 362 9 HOH HOH . N 6 HOH B 1 201 13 HOH HOH . N 6 HOH B 2 202 16 HOH HOH . N 6 HOH B 3 203 20 HOH HOH . N 6 HOH B 4 204 21 HOH HOH . N 6 HOH B 5 205 22 HOH HOH . N 6 HOH B 6 206 27 HOH HOH . N 6 HOH B 7 207 28 HOH HOH . N 6 HOH B 8 208 31 HOH HOH . N 6 HOH B 9 209 33 HOH HOH . N 6 HOH B 10 210 35 HOH HOH . N 6 HOH B 11 211 38 HOH HOH . N 6 HOH B 12 212 41 HOH HOH . N 6 HOH B 13 213 44 HOH HOH . N 6 HOH B 14 214 54 HOH HOH . N 6 HOH B 15 215 59 HOH HOH . N 6 HOH B 16 216 61 HOH HOH . N 6 HOH B 17 217 65 HOH HOH . N 6 HOH B 18 218 66 HOH HOH . N 6 HOH B 19 219 67 HOH HOH . N 6 HOH B 20 220 68 HOH HOH . N 6 HOH B 21 221 73 HOH HOH . N 6 HOH B 22 222 76 HOH HOH . N 6 HOH B 23 223 77 HOH HOH . N 6 HOH B 24 224 83 HOH HOH . N 6 HOH B 25 225 84 HOH HOH . N 6 HOH B 26 226 87 HOH HOH . N 6 HOH B 27 227 89 HOH HOH . N 6 HOH B 28 228 90 HOH HOH . N 6 HOH B 29 229 92 HOH HOH . N 6 HOH B 30 230 94 HOH HOH . N 6 HOH B 31 231 95 HOH HOH . N 6 HOH B 32 232 108 HOH HOH . N 6 HOH B 33 233 110 HOH HOH . N 6 HOH B 34 234 111 HOH HOH . N 6 HOH B 35 235 113 HOH HOH . N 6 HOH B 36 236 114 HOH HOH . N 6 HOH B 37 237 115 HOH HOH . N 6 HOH B 38 238 116 HOH HOH . N 6 HOH B 39 239 119 HOH HOH . N 6 HOH B 40 240 120 HOH HOH . N 6 HOH B 41 241 127 HOH HOH . N 6 HOH B 42 242 128 HOH HOH . N 6 HOH B 43 243 132 HOH HOH . N 6 HOH B 44 244 134 HOH HOH . N 6 HOH B 45 245 135 HOH HOH . N 6 HOH B 46 246 138 HOH HOH . N 6 HOH B 47 247 146 HOH HOH . N 6 HOH B 48 248 147 HOH HOH . N 6 HOH B 49 249 153 HOH HOH . N 6 HOH B 50 250 154 HOH HOH . N 6 HOH B 51 251 11 HOH HOH . O 6 HOH C 1 201 40 HOH HOH . O 6 HOH C 2 202 1 HOH HOH . O 6 HOH C 3 203 5 HOH HOH . O 6 HOH C 4 204 17 HOH HOH . O 6 HOH C 5 205 24 HOH HOH . O 6 HOH C 6 206 25 HOH HOH . O 6 HOH C 7 207 30 HOH HOH . O 6 HOH C 8 208 32 HOH HOH . O 6 HOH C 9 209 34 HOH HOH . O 6 HOH C 10 210 37 HOH HOH . O 6 HOH C 11 211 45 HOH HOH . O 6 HOH C 12 212 47 HOH HOH . O 6 HOH C 13 213 51 HOH HOH . O 6 HOH C 14 214 52 HOH HOH . O 6 HOH C 15 215 55 HOH HOH . O 6 HOH C 16 216 56 HOH HOH . O 6 HOH C 17 217 58 HOH HOH . O 6 HOH C 18 218 62 HOH HOH . O 6 HOH C 19 219 64 HOH HOH . O 6 HOH C 20 220 72 HOH HOH . O 6 HOH C 21 221 74 HOH HOH . O 6 HOH C 22 222 78 HOH HOH . O 6 HOH C 23 223 79 HOH HOH . O 6 HOH C 24 224 85 HOH HOH . O 6 HOH C 25 225 86 HOH HOH . O 6 HOH C 26 226 88 HOH HOH . O 6 HOH C 27 227 93 HOH HOH . O 6 HOH C 28 228 98 HOH HOH . O 6 HOH C 29 229 103 HOH HOH . O 6 HOH C 30 230 104 HOH HOH . O 6 HOH C 31 231 109 HOH HOH . O 6 HOH C 32 232 118 HOH HOH . O 6 HOH C 33 233 121 HOH HOH . O 6 HOH C 34 234 122 HOH HOH . O 6 HOH C 35 235 124 HOH HOH . O 6 HOH C 36 236 125 HOH HOH . O 6 HOH C 37 237 136 HOH HOH . O 6 HOH C 38 238 140 HOH HOH . O 6 HOH C 39 239 142 HOH HOH . O 6 HOH C 40 240 145 HOH HOH . O 6 HOH C 41 241 150 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . H 5 -2.52 -6.497 11.519 1 54.73 ? C1 EDO 205 A 1 HETATM 2 O O1 EDO . . . H 5 -1.281 -7.14 11.76 1 54.15 ? O1 EDO 205 A 1 HETATM 3 C C2 EDO . . . H 5 -2.788 -6.503 10.019 1 55.35 ? C2 EDO 205 A 1 HETATM 4 O O2 EDO . . . H 5 -1.61 -6.137 9.252 1 55.68 ? O2 EDO 205 A 1 # _model_server_stats.io_time_ms 67 _model_server_stats.parse_time_ms 26 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 312 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 4 #