data_3VY7
#
_model_server_result.job_id            3Q7zsRHYFoIvJ-ncEOtayg 
_model_server_result.datetime_utc      '2025-07-03 05:23:48' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3vy7 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":202}' 
#
_entry.id    3VY7 
#
_exptl.entry_id    3VY7 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              180.156 
_entity.id                          3 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            alpha-D-mannopyranose 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3VY7 
_cell.length_a            58.8 
_cell.length_b            73 
_cell.length_c            30.3 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3VY7 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_struct_conn.conn_type_id                   covale 
_struct_conn.details                        ? 
_struct_conn.id                             covale1 
_struct_conn.ptnr1_label_asym_id            B 
_struct_conn.ptnr1_label_atom_id            OG 
_struct_conn.ptnr1_label_comp_id            SER 
_struct_conn.ptnr1_label_seq_id             . 
_struct_conn.ptnr1_auth_asym_id             A 
_struct_conn.ptnr1_auth_comp_id             SER 
_struct_conn.ptnr1_auth_seq_id              201 
_struct_conn.ptnr1_symmetry                 1_555 
_struct_conn.ptnr2_label_asym_id            C 
_struct_conn.ptnr2_label_atom_id            C1 
_struct_conn.ptnr2_label_comp_id            MAN 
_struct_conn.ptnr2_label_seq_id             . 
_struct_conn.ptnr2_auth_asym_id             A 
_struct_conn.ptnr2_auth_comp_id             MAN 
_struct_conn.ptnr2_auth_seq_id              202 
_struct_conn.ptnr2_symmetry                 1_555 
_struct_conn.pdbx_ptnr1_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr1_label_alt_id        ? 
_struct_conn.pdbx_ptnr1_standard_comp_id    ? 
_struct_conn.pdbx_ptnr2_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr2_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr3_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_label_asym_id       ? 
_struct_conn.pdbx_ptnr3_label_atom_id       ? 
_struct_conn.pdbx_ptnr3_label_comp_id       ? 
_struct_conn.pdbx_ptnr3_label_seq_id        ? 
_struct_conn.pdbx_PDB_id                    ? 
_struct_conn.pdbx_dist_value                1.442 
_struct_conn.pdbx_value_order               ? 
#
_chem_comp.formula           'C6 H12 O6' 
_chem_comp.formula_weight    180.156 
_chem_comp.id                MAN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              alpha-D-mannopyranose 
_chem_comp.type              'd-saccharide, alpha linking' 
_chem_comp.pdbx_synonyms     alpha-D-mannose;D-mannose;mannose 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 MAN sing 205 n n 
C1 O1 MAN sing 206 n n 
C1 O5 MAN sing 207 n n 
C1 H1 MAN sing 208 n n 
C2 C3 MAN sing 209 n n 
C2 O2 MAN sing 210 n n 
C2 H2 MAN sing 211 n n 
C3 C4 MAN sing 212 n n 
C3 O3 MAN sing 213 n n 
C3 H3 MAN sing 214 n n 
C4 C5 MAN sing 215 n n 
C4 O4 MAN sing 216 n n 
C4 H4 MAN sing 217 n n 
C5 C6 MAN sing 218 n n 
C5 O5 MAN sing 219 n n 
C5 H5 MAN sing 220 n n 
C6 O6 MAN sing 221 n n 
C6 H61 MAN sing 222 n n 
C6 H62 MAN sing 223 n n 
O1 HO1 MAN sing 224 n n 
O2 HO2 MAN sing 225 n n 
O3 HO3 MAN sing 226 n n 
O4 HO4 MAN sing 227 n n 
O6 HO6 MAN sing 228 n n 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
MAN DManpa 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
MAN a-D-mannopyranose 'COMMON NAME' GMML 1 
MAN a-D-Manp 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
MAN Man 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     3VY7 
_atom_sites.fract_transf_matrix[1][1]    0.017003 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013692 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.033036 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 SER A 1 201 800 SER SER . 
C 3 MAN A 1 202 801 MAN MAN . 
D 4 CL A 1 203 901 CL CL . 
E 4 CL A 1 204 902 CL CL . 
F 5 HOH A 1 301 1 HOH HOH . 
F 5 HOH A 2 302 2 HOH HOH . 
F 5 HOH A 3 303 3 HOH HOH . 
F 5 HOH A 4 304 4 HOH HOH . 
F 5 HOH A 5 305 5 HOH HOH . 
F 5 HOH A 6 306 6 HOH HOH . 
F 5 HOH A 7 307 7 HOH HOH . 
F 5 HOH A 8 308 8 HOH HOH . 
F 5 HOH A 9 309 9 HOH HOH . 
F 5 HOH A 10 310 11 HOH HOH . 
F 5 HOH A 11 311 12 HOH HOH . 
F 5 HOH A 12 312 13 HOH HOH . 
F 5 HOH A 13 313 14 HOH HOH . 
F 5 HOH A 14 314 15 HOH HOH . 
F 5 HOH A 15 315 16 HOH HOH . 
F 5 HOH A 16 316 17 HOH HOH . 
F 5 HOH A 17 317 18 HOH HOH . 
F 5 HOH A 18 318 19 HOH HOH . 
F 5 HOH A 19 319 20 HOH HOH . 
F 5 HOH A 20 320 21 HOH HOH . 
F 5 HOH A 21 321 23 HOH HOH . 
F 5 HOH A 22 322 24 HOH HOH . 
F 5 HOH A 23 323 25 HOH HOH . 
F 5 HOH A 24 324 26 HOH HOH . 
F 5 HOH A 25 325 27 HOH HOH . 
F 5 HOH A 26 326 28 HOH HOH . 
F 5 HOH A 27 327 29 HOH HOH . 
F 5 HOH A 28 328 30 HOH HOH . 
F 5 HOH A 29 329 31 HOH HOH . 
F 5 HOH A 30 330 32 HOH HOH . 
F 5 HOH A 31 331 35 HOH HOH . 
F 5 HOH A 32 332 36 HOH HOH . 
F 5 HOH A 33 333 39 HOH HOH . 
F 5 HOH A 34 334 40 HOH HOH . 
F 5 HOH A 35 335 41 HOH HOH . 
F 5 HOH A 36 336 42 HOH HOH . 
F 5 HOH A 37 337 43 HOH HOH . 
F 5 HOH A 38 338 45 HOH HOH . 
F 5 HOH A 39 339 46 HOH HOH . 
F 5 HOH A 40 340 47 HOH HOH . 
F 5 HOH A 41 341 48 HOH HOH . 
F 5 HOH A 42 342 49 HOH HOH . 
F 5 HOH A 43 343 50 HOH HOH . 
F 5 HOH A 44 344 52 HOH HOH . 
F 5 HOH A 45 345 53 HOH HOH . 
F 5 HOH A 46 346 54 HOH HOH . 
F 5 HOH A 47 347 55 HOH HOH . 
F 5 HOH A 48 348 56 HOH HOH . 
F 5 HOH A 49 349 58 HOH HOH . 
F 5 HOH A 50 350 59 HOH HOH . 
F 5 HOH A 51 351 61 HOH HOH . 
F 5 HOH A 52 352 63 HOH HOH . 
F 5 HOH A 53 353 65 HOH HOH . 
F 5 HOH A 54 354 66 HOH HOH . 
F 5 HOH A 55 355 67 HOH HOH . 
F 5 HOH A 56 356 69 HOH HOH . 
F 5 HOH A 57 357 70 HOH HOH . 
F 5 HOH A 58 358 71 HOH HOH . 
F 5 HOH A 59 359 72 HOH HOH . 
F 5 HOH A 60 360 73 HOH HOH . 
F 5 HOH A 61 361 74 HOH HOH . 
F 5 HOH A 62 362 75 HOH HOH . 
F 5 HOH A 63 363 77 HOH HOH . 
F 5 HOH A 64 364 79 HOH HOH . 
F 5 HOH A 65 365 80 HOH HOH . 
F 5 HOH A 66 366 82 HOH HOH . 
F 5 HOH A 67 367 83 HOH HOH . 
F 5 HOH A 68 368 84 HOH HOH . 
F 5 HOH A 69 369 85 HOH HOH . 
F 5 HOH A 70 370 87 HOH HOH . 
F 5 HOH A 71 371 88 HOH HOH . 
F 5 HOH A 72 372 89 HOH HOH . 
F 5 HOH A 73 373 90 HOH HOH . 
F 5 HOH A 74 374 91 HOH HOH . 
F 5 HOH A 75 375 92 HOH HOH . 
F 5 HOH A 76 376 93 HOH HOH . 
F 5 HOH A 77 377 94 HOH HOH . 
F 5 HOH A 78 378 95 HOH HOH . 
F 5 HOH A 79 379 96 HOH HOH . 
F 5 HOH A 80 380 97 HOH HOH . 
F 5 HOH A 81 381 98 HOH HOH . 
F 5 HOH A 82 382 99 HOH HOH . 
F 5 HOH A 83 383 103 HOH HOH . 
F 5 HOH A 84 384 104 HOH HOH . 
F 5 HOH A 85 385 105 HOH HOH . 
F 5 HOH A 86 386 106 HOH HOH . 
F 5 HOH A 87 387 107 HOH HOH . 
F 5 HOH A 88 388 108 HOH HOH . 
F 5 HOH A 89 389 109 HOH HOH . 
F 5 HOH A 90 390 110 HOH HOH . 
F 5 HOH A 91 391 111 HOH HOH . 
F 5 HOH A 92 392 112 HOH HOH . 
F 5 HOH A 93 393 113 HOH HOH . 
F 5 HOH A 94 394 114 HOH HOH . 
F 5 HOH A 95 395 115 HOH HOH . 
F 5 HOH A 96 396 116 HOH HOH . 
F 5 HOH A 97 397 117 HOH HOH . 
F 5 HOH A 98 398 118 HOH HOH . 
F 5 HOH A 99 399 119 HOH HOH . 
F 5 HOH A 100 400 120 HOH HOH . 
F 5 HOH A 101 401 121 HOH HOH . 
F 5 HOH A 102 402 122 HOH HOH . 
F 5 HOH A 103 403 123 HOH HOH . 
F 5 HOH A 104 404 125 HOH HOH . 
F 5 HOH A 105 405 126 HOH HOH . 
F 5 HOH A 106 406 127 HOH HOH . 
F 5 HOH A 107 407 128 HOH HOH . 
F 5 HOH A 108 408 129 HOH HOH . 
F 5 HOH A 109 409 130 HOH HOH . 
F 5 HOH A 110 410 131 HOH HOH . 
F 5 HOH A 111 411 134 HOH HOH . 
F 5 HOH A 112 412 136 HOH HOH . 
F 5 HOH A 113 413 137 HOH HOH . 
F 5 HOH A 114 414 138 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 MAN . . . C 3 21.811 2.695 10.561 1 28.5 ? C1 MAN 202 A 1 
HETATM 2 C C2 MAN . . . C 3 21.307 3.186 11.917 1 27.5 ? C2 MAN 202 A 1 
HETATM 3 C C3 MAN . . . C 3 19.803 2.921 12.04 1 26.84 ? C3 MAN 202 A 1 
HETATM 4 C C4 MAN . . . C 3 19.024 3.508 10.855 1 26.85 ? C4 MAN 202 A 1 
HETATM 5 C C5 MAN . . . C 3 19.652 3.075 9.527 1 26.56 ? C5 MAN 202 A 1 
HETATM 6 C C6 MAN . . . C 3 19.005 3.716 8.298 1 26.55 ? C6 MAN 202 A 1 
HETATM 7 O O2 MAN . . . C 3 21.599 4.588 12.068 1 27.7 ? O2 MAN 202 A 1 
HETATM 8 O O3 MAN . . . C 3 19.308 3.432 13.285 1 25.83 ? O3 MAN 202 A 1 
HETATM 9 O O4 MAN . . . C 3 17.659 3.072 10.911 1 27.07 ? O4 MAN 202 A 1 
HETATM 10 O O5 MAN . . . C 3 21.065 3.344 9.524 1 27.88 ? O5 MAN 202 A 1 
HETATM 11 O O6 MAN . . . C 3 19.206 5.136 8.282 1 26.24 ? O6 MAN 202 A 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           16 
_model_server_stats.create_model_time_ms    20 
_model_server_stats.query_time_ms           371 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           11 
#