data_3VY8 # _model_server_result.job_id D2rZjzHiEJRuLxXOQgSPhw _model_server_result.datetime_utc '2024-11-24 09:10:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3vy8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":402}' # _entry.id 3VY8 # _exptl.entry_id 3VY8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 132.905 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CESIUM ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3VY8 _cell.length_a 83.201 _cell.length_b 83.201 _cell.length_c 106.415 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3VY8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 173 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 63' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 PISA trimeric 3 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E 1 1 A,B,C,D,E 2 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_655 -y+1,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 83.201 0 0 3 'crystal symmetry operation' 3_665 -x+y+1,-x+1,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 41.6005 72.05418 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O GLY 139 X GLY 125 1_555 B CS CS . X CS 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.159 ? metalc ? metalc2 A O GLU 142 X GLU 128 1_555 B CS CS . X CS 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.187 ? metalc ? metalc3 A O ARG 144 X ARG 130 1_555 C CS CS . X CS 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.041 ? metalc ? metalc4 A OE2 GLU 145 X GLU 131 1_555 C CS CS . X CS 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.417 ? metalc ? metalc5 B CS CS . X CS 401 1_555 E O HOH . X HOH 554 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.194 ? metalc ? metalc6 D CS CS . X CS 403 1_555 E O HOH . X HOH 565 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.93 ? metalc ? metalc7 D CS CS . X CS 403 1_555 E O HOH . X HOH 568 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.65 ? metalc ? metalc8 D CS CS . X CS 403 1_555 E O HOH . X HOH 586 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.559 ? # _chem_comp.formula 'Cs 1' _chem_comp.formula_weight 132.905 _chem_comp.id CS _chem_comp.mon_nstd_flag . _chem_comp.name 'CESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3VY8 _atom_sites.fract_transf_matrix[1][1] 0.012019 _atom_sites.fract_transf_matrix[1][2] 0.006939 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013878 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009397 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CS X 1 401 342 CS CS . C 2 CS X 1 402 343 CS CS . D 2 CS X 1 403 344 CS CS . E 3 HOH X 1 501 345 HOH HOH . E 3 HOH X 2 502 346 HOH HOH . E 3 HOH X 3 503 347 HOH HOH . E 3 HOH X 4 504 348 HOH HOH . E 3 HOH X 5 505 349 HOH HOH . E 3 HOH X 6 506 350 HOH HOH . E 3 HOH X 7 507 351 HOH HOH . E 3 HOH X 8 508 352 HOH HOH . E 3 HOH X 9 509 353 HOH HOH . E 3 HOH X 10 510 354 HOH HOH . E 3 HOH X 11 511 355 HOH HOH . E 3 HOH X 12 512 356 HOH HOH . E 3 HOH X 13 513 357 HOH HOH . E 3 HOH X 14 514 358 HOH HOH . E 3 HOH X 15 515 359 HOH HOH . E 3 HOH X 16 516 360 HOH HOH . E 3 HOH X 17 517 361 HOH HOH . E 3 HOH X 18 518 362 HOH HOH . E 3 HOH X 19 519 363 HOH HOH . E 3 HOH X 20 520 364 HOH HOH . E 3 HOH X 21 521 365 HOH HOH . E 3 HOH X 22 522 366 HOH HOH . E 3 HOH X 23 523 367 HOH HOH . E 3 HOH X 24 524 368 HOH HOH . E 3 HOH X 25 525 369 HOH HOH . E 3 HOH X 26 526 370 HOH HOH . E 3 HOH X 27 527 371 HOH HOH . E 3 HOH X 28 528 372 HOH HOH . E 3 HOH X 29 529 373 HOH HOH . E 3 HOH X 30 530 374 HOH HOH . E 3 HOH X 31 531 375 HOH HOH . E 3 HOH X 32 532 376 HOH HOH . E 3 HOH X 33 533 377 HOH HOH . E 3 HOH X 34 534 378 HOH HOH . E 3 HOH X 35 535 379 HOH HOH . E 3 HOH X 36 536 380 HOH HOH . E 3 HOH X 37 537 381 HOH HOH . E 3 HOH X 38 538 382 HOH HOH . E 3 HOH X 39 539 383 HOH HOH . E 3 HOH X 40 540 384 HOH HOH . E 3 HOH X 41 541 385 HOH HOH . E 3 HOH X 42 542 386 HOH HOH . E 3 HOH X 43 543 387 HOH HOH . E 3 HOH X 44 544 388 HOH HOH . E 3 HOH X 45 545 389 HOH HOH . E 3 HOH X 46 546 390 HOH HOH . E 3 HOH X 47 547 391 HOH HOH . E 3 HOH X 48 548 392 HOH HOH . E 3 HOH X 49 549 393 HOH HOH . E 3 HOH X 50 550 394 HOH HOH . E 3 HOH X 51 551 395 HOH HOH . E 3 HOH X 52 552 396 HOH HOH . E 3 HOH X 53 553 397 HOH HOH . E 3 HOH X 54 554 398 HOH HOH . E 3 HOH X 55 555 399 HOH HOH . E 3 HOH X 56 556 400 HOH HOH . E 3 HOH X 57 557 401 HOH HOH . E 3 HOH X 58 558 402 HOH HOH . E 3 HOH X 59 559 403 HOH HOH . E 3 HOH X 60 560 404 HOH HOH . E 3 HOH X 61 561 405 HOH HOH . E 3 HOH X 62 562 406 HOH HOH . E 3 HOH X 63 563 407 HOH HOH . E 3 HOH X 64 564 408 HOH HOH . E 3 HOH X 65 565 409 HOH HOH . E 3 HOH X 66 566 410 HOH HOH . E 3 HOH X 67 567 411 HOH HOH . E 3 HOH X 68 568 412 HOH HOH . E 3 HOH X 69 569 413 HOH HOH . E 3 HOH X 70 570 414 HOH HOH . E 3 HOH X 71 571 415 HOH HOH . E 3 HOH X 72 572 416 HOH HOH . E 3 HOH X 73 573 417 HOH HOH . E 3 HOH X 74 574 418 HOH HOH . E 3 HOH X 75 575 419 HOH HOH . E 3 HOH X 76 576 420 HOH HOH . E 3 HOH X 77 577 421 HOH HOH . E 3 HOH X 78 578 422 HOH HOH . E 3 HOH X 79 579 423 HOH HOH . E 3 HOH X 80 580 424 HOH HOH . E 3 HOH X 81 581 425 HOH HOH . E 3 HOH X 82 582 426 HOH HOH . E 3 HOH X 83 583 427 HOH HOH . E 3 HOH X 84 584 428 HOH HOH . E 3 HOH X 85 585 429 HOH HOH . E 3 HOH X 86 586 430 HOH HOH . E 3 HOH X 87 587 431 HOH HOH . E 3 HOH X 88 588 432 HOH HOH . E 3 HOH X 89 589 433 HOH HOH . E 3 HOH X 90 590 434 HOH HOH . E 3 HOH X 91 591 435 HOH HOH . E 3 HOH X 92 592 436 HOH HOH . E 3 HOH X 93 593 437 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CS _atom_site.label_atom_id CS _atom_site.label_comp_id CS _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 2 _atom_site.Cartn_x 33.713 _atom_site.Cartn_y 7.623 _atom_site.Cartn_z 24.117 _atom_site.occupancy 0.75 _atom_site.B_iso_or_equiv 69.87 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CS _atom_site.auth_comp_id CS _atom_site.auth_seq_id 402 _atom_site.auth_asym_id X _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 355 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #