data_3VZC # _model_server_result.job_id ZvuMFKN-o0G_G-8SHCw3CQ _model_server_result.datetime_utc '2024-11-23 07:30:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3vzc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"N","auth_seq_id":1002}' # _entry.id 3VZC # _exptl.entry_id 3VZC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3VZC _cell.length_a 102.22 _cell.length_b 106.61 _cell.length_c 226.18 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3VZC _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 PISA monomeric 1 author_and_software_defined_assembly 3 PISA monomeric 1 author_and_software_defined_assembly 4 PISA monomeric 1 author_and_software_defined_assembly 5 PISA monomeric 1 author_and_software_defined_assembly 6 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,G,O 1 1 B,H,P 2 1 C,I,Q 3 1 D,J,K,R 4 1 E,L,S 5 1 F,M,N,T 6 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 K N N ? 3 N N N # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 3VZC _atom_sites.fract_transf_matrix[1][1] 0.009783 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00938 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004421 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 2 UUL A 1 1001 1001 UUL UNL . H 2 UUL B 1 1001 1001 UUL UNL . I 2 UUL C 1 1001 1001 UUL UNL . J 2 UUL D 1 1001 1001 UUL UNL . K 3 EDO D 1 1002 1 EDO EDO . L 2 UUL E 1 1001 1001 UUL UNL . M 2 UUL F 1 1001 1001 UUL UNL . N 3 EDO F 1 1002 1 EDO EDO . O 4 HOH A 1 1101 3 HOH HOH . O 4 HOH A 2 1102 8 HOH HOH . O 4 HOH A 3 1103 10 HOH HOH . O 4 HOH A 4 1104 25 HOH HOH . O 4 HOH A 5 1105 28 HOH HOH . O 4 HOH A 6 1106 29 HOH HOH . O 4 HOH A 7 1107 30 HOH HOH . O 4 HOH A 8 1108 33 HOH HOH . O 4 HOH A 9 1109 42 HOH HOH . O 4 HOH A 10 1110 43 HOH HOH . O 4 HOH A 11 1111 48 HOH HOH . O 4 HOH A 12 1112 55 HOH HOH . O 4 HOH A 13 1113 60 HOH HOH . O 4 HOH A 14 1114 62 HOH HOH . O 4 HOH A 15 1115 70 HOH HOH . O 4 HOH A 16 1116 72 HOH HOH . O 4 HOH A 17 1117 73 HOH HOH . O 4 HOH A 18 1118 85 HOH HOH . O 4 HOH A 19 1119 89 HOH HOH . O 4 HOH A 20 1120 102 HOH HOH . O 4 HOH A 21 1121 104 HOH HOH . O 4 HOH A 22 1122 106 HOH HOH . O 4 HOH A 23 1123 111 HOH HOH . O 4 HOH A 24 1124 115 HOH HOH . O 4 HOH A 25 1125 128 HOH HOH . O 4 HOH A 26 1126 134 HOH HOH . O 4 HOH A 27 1127 135 HOH HOH . O 4 HOH A 28 1128 145 HOH HOH . O 4 HOH A 29 1129 150 HOH HOH . O 4 HOH A 30 1130 156 HOH HOH . O 4 HOH A 31 1131 162 HOH HOH . O 4 HOH A 32 1132 169 HOH HOH . O 4 HOH A 33 1133 178 HOH HOH . O 4 HOH A 34 1134 182 HOH HOH . O 4 HOH A 35 1135 184 HOH HOH . O 4 HOH A 36 1136 190 HOH HOH . O 4 HOH A 37 1137 192 HOH HOH . O 4 HOH A 38 1138 194 HOH HOH . O 4 HOH A 39 1139 196 HOH HOH . O 4 HOH A 40 1140 204 HOH HOH . O 4 HOH A 41 1141 207 HOH HOH . O 4 HOH A 42 1142 212 HOH HOH . O 4 HOH A 43 1143 214 HOH HOH . O 4 HOH A 44 1144 219 HOH HOH . O 4 HOH A 45 1145 221 HOH HOH . O 4 HOH A 46 1146 222 HOH HOH . O 4 HOH A 47 1147 226 HOH HOH . O 4 HOH A 48 1148 240 HOH HOH . O 4 HOH A 49 1149 241 HOH HOH . O 4 HOH A 50 1150 242 HOH HOH . O 4 HOH A 51 1151 247 HOH HOH . O 4 HOH A 52 1152 249 HOH HOH . O 4 HOH A 53 1153 255 HOH HOH . O 4 HOH A 54 1154 257 HOH HOH . O 4 HOH A 55 1155 260 HOH HOH . O 4 HOH A 56 1156 279 HOH HOH . O 4 HOH A 57 1157 280 HOH HOH . O 4 HOH A 58 1158 282 HOH HOH . O 4 HOH A 59 1159 288 HOH HOH . O 4 HOH A 60 1160 295 HOH HOH . P 4 HOH B 1 1101 1 HOH HOH . P 4 HOH B 2 1102 12 HOH HOH . P 4 HOH B 3 1103 13 HOH HOH . P 4 HOH B 4 1104 14 HOH HOH . P 4 HOH B 5 1105 15 HOH HOH . P 4 HOH B 6 1106 17 HOH HOH . P 4 HOH B 7 1107 26 HOH HOH . P 4 HOH B 8 1108 27 HOH HOH . P 4 HOH B 9 1109 35 HOH HOH . P 4 HOH B 10 1110 47 HOH HOH . P 4 HOH B 11 1111 58 HOH HOH . P 4 HOH B 12 1112 65 HOH HOH . P 4 HOH B 13 1113 67 HOH HOH . P 4 HOH B 14 1114 71 HOH HOH . P 4 HOH B 15 1115 82 HOH HOH . P 4 HOH B 16 1116 84 HOH HOH . P 4 HOH B 17 1117 97 HOH HOH . P 4 HOH B 18 1118 98 HOH HOH . P 4 HOH B 19 1119 101 HOH HOH . P 4 HOH B 20 1120 110 HOH HOH . P 4 HOH B 21 1121 113 HOH HOH . P 4 HOH B 22 1122 118 HOH HOH . P 4 HOH B 23 1123 121 HOH HOH . P 4 HOH B 24 1124 130 HOH HOH . P 4 HOH B 25 1125 131 HOH HOH . P 4 HOH B 26 1126 148 HOH HOH . P 4 HOH B 27 1127 149 HOH HOH . P 4 HOH B 28 1128 153 HOH HOH . P 4 HOH B 29 1129 154 HOH HOH . P 4 HOH B 30 1130 155 HOH HOH . P 4 HOH B 31 1131 157 HOH HOH . P 4 HOH B 32 1132 159 HOH HOH . P 4 HOH B 33 1133 170 HOH HOH . P 4 HOH B 34 1134 177 HOH HOH . P 4 HOH B 35 1135 179 HOH HOH . P 4 HOH B 36 1136 181 HOH HOH . P 4 HOH B 37 1137 185 HOH HOH . P 4 HOH B 38 1138 198 HOH HOH . P 4 HOH B 39 1139 206 HOH HOH . P 4 HOH B 40 1140 217 HOH HOH . P 4 HOH B 41 1141 218 HOH HOH . P 4 HOH B 42 1142 224 HOH HOH . P 4 HOH B 43 1143 227 HOH HOH . P 4 HOH B 44 1144 232 HOH HOH . P 4 HOH B 45 1145 237 HOH HOH . P 4 HOH B 46 1146 238 HOH HOH . P 4 HOH B 47 1147 246 HOH HOH . P 4 HOH B 48 1148 248 HOH HOH . P 4 HOH B 49 1149 253 HOH HOH . P 4 HOH B 50 1150 261 HOH HOH . P 4 HOH B 51 1151 276 HOH HOH . P 4 HOH B 52 1152 291 HOH HOH . P 4 HOH B 53 1153 296 HOH HOH . Q 4 HOH C 1 1101 2 HOH HOH . Q 4 HOH C 2 1102 6 HOH HOH . Q 4 HOH C 3 1103 7 HOH HOH . Q 4 HOH C 4 1104 9 HOH HOH . Q 4 HOH C 5 1105 11 HOH HOH . Q 4 HOH C 6 1106 19 HOH HOH . Q 4 HOH C 7 1107 21 HOH HOH . Q 4 HOH C 8 1108 23 HOH HOH . Q 4 HOH C 9 1109 31 HOH HOH . Q 4 HOH C 10 1110 37 HOH HOH . Q 4 HOH C 11 1111 41 HOH HOH . Q 4 HOH C 12 1112 46 HOH HOH . Q 4 HOH C 13 1113 49 HOH HOH . Q 4 HOH C 14 1114 54 HOH HOH . Q 4 HOH C 15 1115 56 HOH HOH . Q 4 HOH C 16 1116 57 HOH HOH . Q 4 HOH C 17 1117 59 HOH HOH . Q 4 HOH C 18 1118 69 HOH HOH . Q 4 HOH C 19 1119 90 HOH HOH . Q 4 HOH C 20 1120 94 HOH HOH . Q 4 HOH C 21 1121 96 HOH HOH . Q 4 HOH C 22 1122 105 HOH HOH . Q 4 HOH C 23 1123 107 HOH HOH . Q 4 HOH C 24 1124 108 HOH HOH . Q 4 HOH C 25 1125 109 HOH HOH . Q 4 HOH C 26 1126 114 HOH HOH . Q 4 HOH C 27 1127 117 HOH HOH . Q 4 HOH C 28 1128 120 HOH HOH . Q 4 HOH C 29 1129 122 HOH HOH . Q 4 HOH C 30 1130 123 HOH HOH . Q 4 HOH C 31 1131 126 HOH HOH . Q 4 HOH C 32 1132 133 HOH HOH . Q 4 HOH C 33 1133 137 HOH HOH . Q 4 HOH C 34 1134 144 HOH HOH . Q 4 HOH C 35 1135 146 HOH HOH . Q 4 HOH C 36 1136 152 HOH HOH . Q 4 HOH C 37 1137 158 HOH HOH . Q 4 HOH C 38 1138 167 HOH HOH . Q 4 HOH C 39 1139 172 HOH HOH . Q 4 HOH C 40 1140 173 HOH HOH . Q 4 HOH C 41 1141 187 HOH HOH . Q 4 HOH C 42 1142 188 HOH HOH . Q 4 HOH C 43 1143 195 HOH HOH . Q 4 HOH C 44 1144 200 HOH HOH . Q 4 HOH C 45 1145 202 HOH HOH . Q 4 HOH C 46 1146 203 HOH HOH . Q 4 HOH C 47 1147 210 HOH HOH . Q 4 HOH C 48 1148 211 HOH HOH . Q 4 HOH C 49 1149 228 HOH HOH . Q 4 HOH C 50 1150 233 HOH HOH . Q 4 HOH C 51 1151 250 HOH HOH . Q 4 HOH C 52 1152 263 HOH HOH . Q 4 HOH C 53 1153 265 HOH HOH . Q 4 HOH C 54 1154 271 HOH HOH . Q 4 HOH C 55 1155 273 HOH HOH . Q 4 HOH C 56 1156 274 HOH HOH . Q 4 HOH C 57 1157 277 HOH HOH . Q 4 HOH C 58 1158 278 HOH HOH . Q 4 HOH C 59 1159 283 HOH HOH . Q 4 HOH C 60 1160 286 HOH HOH . Q 4 HOH C 61 1161 289 HOH HOH . Q 4 HOH C 62 1162 297 HOH HOH . R 4 HOH D 1 1101 16 HOH HOH . R 4 HOH D 2 1102 24 HOH HOH . R 4 HOH D 3 1103 32 HOH HOH . R 4 HOH D 4 1104 45 HOH HOH . R 4 HOH D 5 1105 51 HOH HOH . R 4 HOH D 6 1106 63 HOH HOH . R 4 HOH D 7 1107 66 HOH HOH . R 4 HOH D 8 1108 68 HOH HOH . R 4 HOH D 9 1109 74 HOH HOH . R 4 HOH D 10 1110 75 HOH HOH . R 4 HOH D 11 1111 76 HOH HOH . R 4 HOH D 12 1112 86 HOH HOH . R 4 HOH D 13 1113 88 HOH HOH . R 4 HOH D 14 1114 91 HOH HOH . R 4 HOH D 15 1115 93 HOH HOH . R 4 HOH D 16 1116 95 HOH HOH . R 4 HOH D 17 1117 125 HOH HOH . R 4 HOH D 18 1118 132 HOH HOH . R 4 HOH D 19 1119 136 HOH HOH . R 4 HOH D 20 1120 140 HOH HOH . R 4 HOH D 21 1121 141 HOH HOH . R 4 HOH D 22 1122 142 HOH HOH . R 4 HOH D 23 1123 160 HOH HOH . R 4 HOH D 24 1124 168 HOH HOH . R 4 HOH D 25 1125 186 HOH HOH . R 4 HOH D 26 1126 189 HOH HOH . R 4 HOH D 27 1127 205 HOH HOH . R 4 HOH D 28 1128 209 HOH HOH . R 4 HOH D 29 1129 236 HOH HOH . R 4 HOH D 30 1130 251 HOH HOH . R 4 HOH D 31 1131 262 HOH HOH . R 4 HOH D 32 1132 266 HOH HOH . R 4 HOH D 33 1133 269 HOH HOH . R 4 HOH D 34 1134 275 HOH HOH . R 4 HOH D 35 1135 284 HOH HOH . S 4 HOH E 1 1101 5 HOH HOH . S 4 HOH E 2 1102 22 HOH HOH . S 4 HOH E 3 1103 34 HOH HOH . S 4 HOH E 4 1104 38 HOH HOH . S 4 HOH E 5 1105 39 HOH HOH . S 4 HOH E 6 1106 40 HOH HOH . S 4 HOH E 7 1107 44 HOH HOH . S 4 HOH E 8 1108 77 HOH HOH . S 4 HOH E 9 1109 78 HOH HOH . S 4 HOH E 10 1110 79 HOH HOH . S 4 HOH E 11 1111 80 HOH HOH . S 4 HOH E 12 1112 81 HOH HOH . S 4 HOH E 13 1113 83 HOH HOH . S 4 HOH E 14 1114 92 HOH HOH . S 4 HOH E 15 1115 99 HOH HOH . S 4 HOH E 16 1116 103 HOH HOH . S 4 HOH E 17 1117 129 HOH HOH . S 4 HOH E 18 1118 138 HOH HOH . S 4 HOH E 19 1119 151 HOH HOH . S 4 HOH E 20 1120 161 HOH HOH . S 4 HOH E 21 1121 164 HOH HOH . S 4 HOH E 22 1122 165 HOH HOH . S 4 HOH E 23 1123 166 HOH HOH . S 4 HOH E 24 1124 171 HOH HOH . S 4 HOH E 25 1125 176 HOH HOH . S 4 HOH E 26 1126 183 HOH HOH . S 4 HOH E 27 1127 197 HOH HOH . S 4 HOH E 28 1128 201 HOH HOH . S 4 HOH E 29 1129 213 HOH HOH . S 4 HOH E 30 1130 215 HOH HOH . S 4 HOH E 31 1131 220 HOH HOH . S 4 HOH E 32 1132 223 HOH HOH . S 4 HOH E 33 1133 230 HOH HOH . S 4 HOH E 34 1134 231 HOH HOH . S 4 HOH E 35 1135 234 HOH HOH . S 4 HOH E 36 1136 235 HOH HOH . S 4 HOH E 37 1137 239 HOH HOH . S 4 HOH E 38 1138 243 HOH HOH . S 4 HOH E 39 1139 252 HOH HOH . S 4 HOH E 40 1140 254 HOH HOH . S 4 HOH E 41 1141 256 HOH HOH . S 4 HOH E 42 1142 268 HOH HOH . S 4 HOH E 43 1143 272 HOH HOH . S 4 HOH E 44 1144 287 HOH HOH . S 4 HOH E 45 1145 292 HOH HOH . S 4 HOH E 46 1146 293 HOH HOH . T 4 HOH F 1 1101 116 HOH HOH . T 4 HOH F 2 1102 4 HOH HOH . T 4 HOH F 3 1103 18 HOH HOH . T 4 HOH F 4 1104 20 HOH HOH . T 4 HOH F 5 1105 36 HOH HOH . T 4 HOH F 6 1106 52 HOH HOH . T 4 HOH F 7 1107 61 HOH HOH . T 4 HOH F 8 1108 64 HOH HOH . T 4 HOH F 9 1109 87 HOH HOH . T 4 HOH F 10 1110 100 HOH HOH . T 4 HOH F 11 1111 112 HOH HOH . T 4 HOH F 12 1112 119 HOH HOH . T 4 HOH F 13 1113 124 HOH HOH . T 4 HOH F 14 1114 127 HOH HOH . T 4 HOH F 15 1115 139 HOH HOH . T 4 HOH F 16 1116 143 HOH HOH . T 4 HOH F 17 1117 147 HOH HOH . T 4 HOH F 18 1118 163 HOH HOH . T 4 HOH F 19 1119 174 HOH HOH . T 4 HOH F 20 1120 175 HOH HOH . T 4 HOH F 21 1121 180 HOH HOH . T 4 HOH F 22 1122 191 HOH HOH . T 4 HOH F 23 1123 193 HOH HOH . T 4 HOH F 24 1124 208 HOH HOH . T 4 HOH F 25 1125 216 HOH HOH . T 4 HOH F 26 1126 225 HOH HOH . T 4 HOH F 27 1127 244 HOH HOH . T 4 HOH F 28 1128 245 HOH HOH . T 4 HOH F 29 1129 258 HOH HOH . T 4 HOH F 30 1130 259 HOH HOH . T 4 HOH F 31 1131 264 HOH HOH . T 4 HOH F 32 1132 267 HOH HOH . T 4 HOH F 33 1133 270 HOH HOH . T 4 HOH F 34 1134 281 HOH HOH . T 4 HOH F 35 1135 285 HOH HOH . T 4 HOH F 36 1136 290 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . N 3 -36.303 -81.621 49.224 1 38.95 ? C1 EDO 1002 F 1 HETATM 2 O O1 EDO . . . N 3 -35.018 -81.003 49.212 1 35.71 ? O1 EDO 1002 F 1 HETATM 3 C C2 EDO . . . N 3 -36.997 -81.066 50.454 1 42.38 ? C2 EDO 1002 F 1 HETATM 4 O O2 EDO . . . N 3 -38.256 -81.712 50.558 1 44.25 ? O2 EDO 1002 F 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 27 _model_server_stats.create_model_time_ms 21 _model_server_stats.query_time_ms 312 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 4 #