data_3VZU # _model_server_result.job_id FPNZPdd_TcPu8YFDvPKsEQ _model_server_result.datetime_utc '2024-10-19 06:29:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3vzu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 3VZU # _exptl.entry_id 3VZU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 506.196 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3VZU _cell.length_a 84.482 _cell.length_b 84.482 _cell.length_c 106.302 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3VZU _symmetry.cell_setting ? _symmetry.Int_Tables_number 173 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 63' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_655 -y+1,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 84.482 0 0 3 'crystal symmetry operation' 3_665 -x+y+1,-x+1,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 42.241 73.163558 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H17 N6 O12 P3' _chem_comp.formula_weight 506.196 _chem_comp.id ANP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ANP doub 13 n n PG O2G ANP sing 14 n n PG O3G ANP sing 15 n n PG N3B ANP sing 16 n n O2G HOG2 ANP sing 17 n n O3G HOG3 ANP sing 18 n n PB O1B ANP doub 19 n n PB O2B ANP sing 20 n n PB N3B ANP sing 21 n n PB O3A ANP sing 22 n n O2B HOB2 ANP sing 23 n n N3B HNB1 ANP sing 24 n n PA O1A ANP doub 25 n n PA O2A ANP sing 26 n n PA O3A ANP sing 27 n n PA O5' ANP sing 28 n n O2A HOA2 ANP sing 29 n n O5' C5' ANP sing 30 n n C5' C4' ANP sing 31 n n C5' "H5'1" ANP sing 32 n n C5' "H5'2" ANP sing 33 n n C4' O4' ANP sing 34 n n C4' C3' ANP sing 35 n n C4' H4' ANP sing 36 n n O4' C1' ANP sing 37 n n C3' O3' ANP sing 38 n n C3' C2' ANP sing 39 n n C3' H3' ANP sing 40 n n O3' HO3' ANP sing 41 n n C2' O2' ANP sing 42 n n C2' C1' ANP sing 43 n n C2' H2' ANP sing 44 n n O2' HO2' ANP sing 45 n n C1' N9 ANP sing 46 n n C1' H1' ANP sing 47 n n N9 C8 ANP sing 48 n y N9 C4 ANP sing 49 n y C8 N7 ANP doub 50 n y C8 H8 ANP sing 51 n n N7 C5 ANP sing 52 n y C5 C6 ANP sing 53 n y C5 C4 ANP doub 54 n y C6 N6 ANP sing 55 n n C6 N1 ANP doub 56 n y N6 HN61 ANP sing 57 n n N6 HN62 ANP sing 58 n n N1 C2 ANP sing 59 n y C2 N3 ANP doub 60 n y C2 H2 ANP sing 61 n n N3 C4 ANP sing 62 n y # _atom_sites.entry_id 3VZU _atom_sites.fract_transf_matrix[1][1] 0.011837 _atom_sites.fract_transf_matrix[1][2] 0.006834 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013668 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009407 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id B _pdbx_nonpoly_scheme.entity_id 2 _pdbx_nonpoly_scheme.mon_id ANP _pdbx_nonpoly_scheme.pdb_strand_id X _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 401 _pdbx_nonpoly_scheme.auth_seq_num 401 _pdbx_nonpoly_scheme.pdb_mon_id ANP _pdbx_nonpoly_scheme.auth_mon_id ANP _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ANP . . . B 2 28.559 11.959 9.885 0.85 176.07 ? PG ANP 401 X 1 HETATM 2 O O1G ANP . . . B 2 28.336 11.83 11.372 0.85 158.24 ? O1G ANP 401 X 1 HETATM 3 O O2G ANP . . . B 2 30.012 12.073 9.504 0.85 160.86 ? O2G ANP 401 X 1 HETATM 4 O O3G ANP . . . B 2 27.795 10.962 9.056 0.85 166.92 ? O3G ANP 401 X 1 HETATM 5 P PB ANP . . . B 2 27.655 14.74 10.632 0.85 190.28 ? PB ANP 401 X 1 HETATM 6 O O1B ANP . . . B 2 27.984 16.06 9.985 0.85 167.46 ? O1B ANP 401 X 1 HETATM 7 O O2B ANP . . . B 2 28.462 14.337 11.841 0.85 174.44 ? O2B ANP 401 X 1 HETATM 8 N N3B ANP . . . B 2 27.829 13.481 9.436 0.85 154.04 ? N3B ANP 401 X 1 HETATM 9 P PA ANP . . . B 2 25.437 13.747 12.054 0.85 195.56 ? PA ANP 401 X 1 HETATM 10 O O1A ANP . . . B 2 24.139 14.322 12.558 0.85 169.35 ? O1A ANP 401 X 1 HETATM 11 O O2A ANP . . . B 2 25.443 12.414 11.349 0.85 173.05 ? O2A ANP 401 X 1 HETATM 12 O O3A ANP . . . B 2 26.107 14.825 11.065 0.85 178.22 ? O3A ANP 401 X 1 HETATM 13 O O5' ANP . . . B 2 26.468 13.668 13.286 0.85 161.23 ? O5' ANP 401 X 1 HETATM 14 C C5' ANP . . . B 2 26.021 13.285 14.581 0.85 148.41 ? C5' ANP 401 X 1 HETATM 15 C C4' ANP . . . B 2 25.066 14.347 15.098 0.85 151.27 ? C4' ANP 401 X 1 HETATM 16 O O4' ANP . . . B 2 24.774 14.102 16.475 0.85 147.82 ? O4' ANP 401 X 1 HETATM 17 C C3' ANP . . . B 2 25.684 15.732 14.997 0.85 152.51 ? C3' ANP 401 X 1 HETATM 18 O O3' ANP . . . B 2 25.035 16.516 13.991 0.85 152.61 ? O3' ANP 401 X 1 HETATM 19 C C2' ANP . . . B 2 25.495 16.357 16.361 0.85 147.84 ? C2' ANP 401 X 1 HETATM 20 O O2' ANP . . . B 2 24.394 17.267 16.33 0.85 144.47 ? O2' ANP 401 X 1 HETATM 21 C C1' ANP . . . B 2 25.187 15.197 17.29 0.85 153.2 ? C1' ANP 401 X 1 HETATM 22 N N9 ANP . . . B 2 26.429 14.828 18.005 0.85 156.41 ? N9 ANP 401 X 1 HETATM 23 C C8 ANP . . . B 2 27.592 14.487 17.423 0.85 155.81 ? C8 ANP 401 X 1 HETATM 24 N N7 ANP . . . B 2 28.538 14.209 18.353 0.85 153.72 ? N7 ANP 401 X 1 HETATM 25 C C5 ANP . . . B 2 27.975 14.374 19.562 0.85 154.78 ? C5 ANP 401 X 1 HETATM 26 C C6 ANP . . . B 2 28.411 14.244 20.968 0.85 155.5 ? C6 ANP 401 X 1 HETATM 27 N N6 ANP . . . B 2 29.674 13.873 21.269 0.85 151.6 ? N6 ANP 401 X 1 HETATM 28 N N1 ANP . . . B 2 27.512 14.507 21.938 0.85 156.06 ? N1 ANP 401 X 1 HETATM 29 C C2 ANP . . . B 2 26.254 14.879 21.647 0.85 154.53 ? C2 ANP 401 X 1 HETATM 30 N N3 ANP . . . B 2 25.787 15.016 20.393 0.85 154.2 ? N3 ANP 401 X 1 HETATM 31 C C4 ANP . . . B 2 26.585 14.783 19.327 0.85 153.89 ? C4 ANP 401 X 1 # _model_server_stats.io_time_ms 53 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 343 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 31 #