data_3W06 # _model_server_result.job_id tk2XIddAIcV4aTJR3OKr7w _model_server_result.datetime_utc '2024-11-05 05:03:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3w06 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":306}' # _entry.id 3W06 # _exptl.entry_id 3W06 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 115.81 _cell.angle_gamma 90 _cell.entry_id 3W06 _cell.length_a 50.953 _cell.length_b 55.603 _cell.length_c 53.128 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3W06 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N ? 2 G N N # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 3W06 _atom_sites.fract_transf_matrix[1][1] 0.019626 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.009492 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017985 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.020908 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 EDO A 1 301 1 EDO EDO . C 2 EDO A 1 302 2 EDO EDO . D 2 EDO A 1 303 3 EDO EDO . E 2 EDO A 1 304 4 EDO EDO . F 2 EDO A 1 305 5 EDO EDO . G 2 EDO A 1 306 6 EDO EDO . H 3 HOH A 1 401 1 HOH HOH . H 3 HOH A 2 402 3 HOH HOH . H 3 HOH A 3 403 4 HOH HOH . H 3 HOH A 4 404 5 HOH HOH . H 3 HOH A 5 405 6 HOH HOH . H 3 HOH A 6 406 7 HOH HOH . H 3 HOH A 7 407 8 HOH HOH . H 3 HOH A 8 408 10 HOH HOH . H 3 HOH A 9 409 11 HOH HOH . H 3 HOH A 10 410 12 HOH HOH . H 3 HOH A 11 411 13 HOH HOH . H 3 HOH A 12 412 14 HOH HOH . H 3 HOH A 13 413 15 HOH HOH . H 3 HOH A 14 414 16 HOH HOH . H 3 HOH A 15 415 17 HOH HOH . H 3 HOH A 16 416 18 HOH HOH . H 3 HOH A 17 417 19 HOH HOH . H 3 HOH A 18 418 20 HOH HOH . H 3 HOH A 19 419 21 HOH HOH . H 3 HOH A 20 420 22 HOH HOH . H 3 HOH A 21 421 23 HOH HOH . H 3 HOH A 22 422 24 HOH HOH . H 3 HOH A 23 423 25 HOH HOH . H 3 HOH A 24 424 26 HOH HOH . H 3 HOH A 25 425 27 HOH HOH . H 3 HOH A 26 426 28 HOH HOH . H 3 HOH A 27 427 29 HOH HOH . H 3 HOH A 28 428 30 HOH HOH . H 3 HOH A 29 429 31 HOH HOH . H 3 HOH A 30 430 32 HOH HOH . H 3 HOH A 31 431 33 HOH HOH . H 3 HOH A 32 432 34 HOH HOH . H 3 HOH A 33 433 35 HOH HOH . H 3 HOH A 34 434 37 HOH HOH . H 3 HOH A 35 435 38 HOH HOH . H 3 HOH A 36 436 39 HOH HOH . H 3 HOH A 37 437 40 HOH HOH . H 3 HOH A 38 438 41 HOH HOH . H 3 HOH A 39 439 42 HOH HOH . H 3 HOH A 40 440 43 HOH HOH . H 3 HOH A 41 441 44 HOH HOH . H 3 HOH A 42 442 45 HOH HOH . H 3 HOH A 43 443 46 HOH HOH . H 3 HOH A 44 444 47 HOH HOH . H 3 HOH A 45 445 48 HOH HOH . H 3 HOH A 46 446 49 HOH HOH . H 3 HOH A 47 447 50 HOH HOH . H 3 HOH A 48 448 51 HOH HOH . H 3 HOH A 49 449 52 HOH HOH . H 3 HOH A 50 450 53 HOH HOH . H 3 HOH A 51 451 55 HOH HOH . H 3 HOH A 52 452 56 HOH HOH . H 3 HOH A 53 453 57 HOH HOH . H 3 HOH A 54 454 58 HOH HOH . H 3 HOH A 55 455 59 HOH HOH . H 3 HOH A 56 456 60 HOH HOH . H 3 HOH A 57 457 61 HOH HOH . H 3 HOH A 58 458 62 HOH HOH . H 3 HOH A 59 459 63 HOH HOH . H 3 HOH A 60 460 64 HOH HOH . H 3 HOH A 61 461 65 HOH HOH . H 3 HOH A 62 462 66 HOH HOH . H 3 HOH A 63 463 67 HOH HOH . H 3 HOH A 64 464 69 HOH HOH . H 3 HOH A 65 465 70 HOH HOH . H 3 HOH A 66 466 71 HOH HOH . H 3 HOH A 67 467 72 HOH HOH . H 3 HOH A 68 468 73 HOH HOH . H 3 HOH A 69 469 74 HOH HOH . H 3 HOH A 70 470 75 HOH HOH . H 3 HOH A 71 471 76 HOH HOH . H 3 HOH A 72 472 78 HOH HOH . H 3 HOH A 73 473 79 HOH HOH . H 3 HOH A 74 474 81 HOH HOH . H 3 HOH A 75 475 82 HOH HOH . H 3 HOH A 76 476 83 HOH HOH . H 3 HOH A 77 477 84 HOH HOH . H 3 HOH A 78 478 85 HOH HOH . H 3 HOH A 79 479 87 HOH HOH . H 3 HOH A 80 480 88 HOH HOH . H 3 HOH A 81 481 89 HOH HOH . H 3 HOH A 82 482 90 HOH HOH . H 3 HOH A 83 483 91 HOH HOH . H 3 HOH A 84 484 92 HOH HOH . H 3 HOH A 85 485 93 HOH HOH . H 3 HOH A 86 486 94 HOH HOH . H 3 HOH A 87 487 95 HOH HOH . H 3 HOH A 88 488 96 HOH HOH . H 3 HOH A 89 489 97 HOH HOH . H 3 HOH A 90 490 98 HOH HOH . H 3 HOH A 91 491 99 HOH HOH . H 3 HOH A 92 492 100 HOH HOH . H 3 HOH A 93 493 101 HOH HOH . H 3 HOH A 94 494 102 HOH HOH . H 3 HOH A 95 495 103 HOH HOH . H 3 HOH A 96 496 104 HOH HOH . H 3 HOH A 97 497 105 HOH HOH . H 3 HOH A 98 498 106 HOH HOH . H 3 HOH A 99 499 107 HOH HOH . H 3 HOH A 100 500 108 HOH HOH . H 3 HOH A 101 501 109 HOH HOH . H 3 HOH A 102 502 110 HOH HOH . H 3 HOH A 103 503 111 HOH HOH . H 3 HOH A 104 504 112 HOH HOH . H 3 HOH A 105 505 113 HOH HOH . H 3 HOH A 106 506 114 HOH HOH . H 3 HOH A 107 507 115 HOH HOH . H 3 HOH A 108 508 116 HOH HOH . H 3 HOH A 109 509 117 HOH HOH . H 3 HOH A 110 510 118 HOH HOH . H 3 HOH A 111 511 119 HOH HOH . H 3 HOH A 112 512 120 HOH HOH . H 3 HOH A 113 513 121 HOH HOH . H 3 HOH A 114 514 122 HOH HOH . H 3 HOH A 115 515 123 HOH HOH . H 3 HOH A 116 516 124 HOH HOH . H 3 HOH A 117 517 125 HOH HOH . H 3 HOH A 118 518 126 HOH HOH . H 3 HOH A 119 519 127 HOH HOH . H 3 HOH A 120 520 128 HOH HOH . H 3 HOH A 121 521 129 HOH HOH . H 3 HOH A 122 522 130 HOH HOH . H 3 HOH A 123 523 131 HOH HOH . H 3 HOH A 124 524 132 HOH HOH . H 3 HOH A 125 525 133 HOH HOH . H 3 HOH A 126 526 134 HOH HOH . H 3 HOH A 127 527 135 HOH HOH . H 3 HOH A 128 528 136 HOH HOH . H 3 HOH A 129 529 137 HOH HOH . H 3 HOH A 130 530 139 HOH HOH . H 3 HOH A 131 531 141 HOH HOH . H 3 HOH A 132 532 142 HOH HOH . H 3 HOH A 133 533 143 HOH HOH . H 3 HOH A 134 534 144 HOH HOH . H 3 HOH A 135 535 146 HOH HOH . H 3 HOH A 136 536 148 HOH HOH . H 3 HOH A 137 537 149 HOH HOH . H 3 HOH A 138 538 150 HOH HOH . H 3 HOH A 139 539 151 HOH HOH . H 3 HOH A 140 540 152 HOH HOH . H 3 HOH A 141 541 153 HOH HOH . H 3 HOH A 142 542 154 HOH HOH . H 3 HOH A 143 543 155 HOH HOH . H 3 HOH A 144 544 156 HOH HOH . H 3 HOH A 145 545 157 HOH HOH . H 3 HOH A 146 546 158 HOH HOH . H 3 HOH A 147 547 159 HOH HOH . H 3 HOH A 148 548 160 HOH HOH . H 3 HOH A 149 549 161 HOH HOH . H 3 HOH A 150 550 162 HOH HOH . H 3 HOH A 151 551 163 HOH HOH . H 3 HOH A 152 552 164 HOH HOH . H 3 HOH A 153 553 167 HOH HOH . H 3 HOH A 154 554 168 HOH HOH . H 3 HOH A 155 555 169 HOH HOH . H 3 HOH A 156 556 170 HOH HOH . H 3 HOH A 157 557 171 HOH HOH . H 3 HOH A 158 558 172 HOH HOH . H 3 HOH A 159 559 173 HOH HOH . H 3 HOH A 160 560 174 HOH HOH . H 3 HOH A 161 561 175 HOH HOH . H 3 HOH A 162 562 176 HOH HOH . H 3 HOH A 163 563 177 HOH HOH . H 3 HOH A 164 564 178 HOH HOH . H 3 HOH A 165 565 179 HOH HOH . H 3 HOH A 166 566 180 HOH HOH . H 3 HOH A 167 567 181 HOH HOH . H 3 HOH A 168 568 183 HOH HOH . H 3 HOH A 169 569 184 HOH HOH . H 3 HOH A 170 570 185 HOH HOH . H 3 HOH A 171 571 186 HOH HOH . H 3 HOH A 172 572 187 HOH HOH . H 3 HOH A 173 573 188 HOH HOH . H 3 HOH A 174 574 189 HOH HOH . H 3 HOH A 175 575 190 HOH HOH . H 3 HOH A 176 576 191 HOH HOH . H 3 HOH A 177 577 192 HOH HOH . H 3 HOH A 178 578 193 HOH HOH . H 3 HOH A 179 579 194 HOH HOH . H 3 HOH A 180 580 195 HOH HOH . H 3 HOH A 181 581 196 HOH HOH . H 3 HOH A 182 582 197 HOH HOH . H 3 HOH A 183 583 198 HOH HOH . H 3 HOH A 184 584 199 HOH HOH . H 3 HOH A 185 585 200 HOH HOH . H 3 HOH A 186 586 201 HOH HOH . H 3 HOH A 187 587 202 HOH HOH . H 3 HOH A 188 588 203 HOH HOH . H 3 HOH A 189 589 204 HOH HOH . H 3 HOH A 190 590 205 HOH HOH . H 3 HOH A 191 591 206 HOH HOH . H 3 HOH A 192 592 207 HOH HOH . H 3 HOH A 193 593 208 HOH HOH . H 3 HOH A 194 594 209 HOH HOH . H 3 HOH A 195 595 214 HOH HOH . H 3 HOH A 196 596 217 HOH HOH . H 3 HOH A 197 597 218 HOH HOH . H 3 HOH A 198 598 219 HOH HOH . H 3 HOH A 199 599 220 HOH HOH . H 3 HOH A 200 600 222 HOH HOH . H 3 HOH A 201 601 223 HOH HOH . H 3 HOH A 202 602 225 HOH HOH . H 3 HOH A 203 603 226 HOH HOH . H 3 HOH A 204 604 229 HOH HOH . H 3 HOH A 205 605 230 HOH HOH . H 3 HOH A 206 606 231 HOH HOH . H 3 HOH A 207 607 232 HOH HOH . H 3 HOH A 208 608 233 HOH HOH . H 3 HOH A 209 609 235 HOH HOH . H 3 HOH A 210 610 236 HOH HOH . H 3 HOH A 211 611 237 HOH HOH . H 3 HOH A 212 612 238 HOH HOH . H 3 HOH A 213 613 239 HOH HOH . H 3 HOH A 214 614 240 HOH HOH . H 3 HOH A 215 615 241 HOH HOH . H 3 HOH A 216 616 242 HOH HOH . H 3 HOH A 217 617 243 HOH HOH . H 3 HOH A 218 618 244 HOH HOH . H 3 HOH A 219 619 245 HOH HOH . H 3 HOH A 220 620 246 HOH HOH . H 3 HOH A 221 621 247 HOH HOH . H 3 HOH A 222 622 249 HOH HOH . H 3 HOH A 223 623 251 HOH HOH . H 3 HOH A 224 624 252 HOH HOH . H 3 HOH A 225 625 253 HOH HOH . H 3 HOH A 226 626 254 HOH HOH . H 3 HOH A 227 627 255 HOH HOH . H 3 HOH A 228 628 257 HOH HOH . H 3 HOH A 229 629 259 HOH HOH . H 3 HOH A 230 630 260 HOH HOH . H 3 HOH A 231 631 261 HOH HOH . H 3 HOH A 232 632 263 HOH HOH . H 3 HOH A 233 633 264 HOH HOH . H 3 HOH A 234 634 265 HOH HOH . H 3 HOH A 235 635 266 HOH HOH . H 3 HOH A 236 636 269 HOH HOH . H 3 HOH A 237 637 270 HOH HOH . H 3 HOH A 238 638 271 HOH HOH . H 3 HOH A 239 639 272 HOH HOH . H 3 HOH A 240 640 273 HOH HOH . H 3 HOH A 241 641 274 HOH HOH . H 3 HOH A 242 642 275 HOH HOH . H 3 HOH A 243 643 276 HOH HOH . H 3 HOH A 244 644 278 HOH HOH . H 3 HOH A 245 645 279 HOH HOH . H 3 HOH A 246 646 283 HOH HOH . H 3 HOH A 247 647 284 HOH HOH . H 3 HOH A 248 648 285 HOH HOH . H 3 HOH A 249 649 286 HOH HOH . H 3 HOH A 250 650 287 HOH HOH . H 3 HOH A 251 651 289 HOH HOH . H 3 HOH A 252 652 290 HOH HOH . H 3 HOH A 253 653 292 HOH HOH . H 3 HOH A 254 654 293 HOH HOH . H 3 HOH A 255 655 295 HOH HOH . H 3 HOH A 256 656 301 HOH HOH . H 3 HOH A 257 657 303 HOH HOH . H 3 HOH A 258 658 305 HOH HOH . H 3 HOH A 259 659 307 HOH HOH . H 3 HOH A 260 660 312 HOH HOH . H 3 HOH A 261 661 317 HOH HOH . H 3 HOH A 262 662 319 HOH HOH . H 3 HOH A 263 663 323 HOH HOH . H 3 HOH A 264 664 324 HOH HOH . H 3 HOH A 265 665 328 HOH HOH . H 3 HOH A 266 666 332 HOH HOH . H 3 HOH A 267 667 335 HOH HOH . H 3 HOH A 268 668 338 HOH HOH . H 3 HOH A 269 669 341 HOH HOH . H 3 HOH A 270 670 344 HOH HOH . H 3 HOH A 271 671 345 HOH HOH . H 3 HOH A 272 672 346 HOH HOH . H 3 HOH A 273 673 350 HOH HOH . H 3 HOH A 274 674 351 HOH HOH . H 3 HOH A 275 675 353 HOH HOH . H 3 HOH A 276 676 363 HOH HOH . H 3 HOH A 277 677 365 HOH HOH . H 3 HOH A 278 678 367 HOH HOH . H 3 HOH A 279 679 368 HOH HOH . H 3 HOH A 280 680 369 HOH HOH . H 3 HOH A 281 681 370 HOH HOH . H 3 HOH A 282 682 371 HOH HOH . H 3 HOH A 283 683 372 HOH HOH . H 3 HOH A 284 684 374 HOH HOH . H 3 HOH A 285 685 375 HOH HOH . H 3 HOH A 286 686 376 HOH HOH . H 3 HOH A 287 687 377 HOH HOH . H 3 HOH A 288 688 378 HOH HOH . H 3 HOH A 289 689 379 HOH HOH . H 3 HOH A 290 690 380 HOH HOH . H 3 HOH A 291 691 381 HOH HOH . H 3 HOH A 292 692 382 HOH HOH . H 3 HOH A 293 693 383 HOH HOH . H 3 HOH A 294 694 384 HOH HOH . H 3 HOH A 295 695 385 HOH HOH . H 3 HOH A 296 696 386 HOH HOH . H 3 HOH A 297 697 387 HOH HOH . H 3 HOH A 298 698 388 HOH HOH . H 3 HOH A 299 699 389 HOH HOH . H 3 HOH A 300 700 390 HOH HOH . H 3 HOH A 301 701 391 HOH HOH . H 3 HOH A 302 702 392 HOH HOH . H 3 HOH A 303 703 393 HOH HOH . H 3 HOH A 304 704 394 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . G 2 -25.291 -21.724 -26.567 1 31.14 ? C1 EDO 306 A 1 HETATM 2 O O1 EDO . . . G 2 -24.986 -21.132 -27.842 1 42.3 ? O1 EDO 306 A 1 HETATM 3 C C2 EDO . . . G 2 -26.092 -20.777 -25.665 1 22.47 ? C2 EDO 306 A 1 HETATM 4 O O2 EDO . . . G 2 -27.457 -20.51 -26.055 1 31.46 ? O2 EDO 306 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 271 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 4 #