data_3W0N # _model_server_result.job_id T3saXkADt8pOL9irj6xqaA _model_server_result.datetime_utc '2024-11-16 08:42:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3w0n # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 3W0N # _exptl.entry_id 3W0N _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 506.196 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3W0N _cell.length_a 70.348 _cell.length_b 70.348 _cell.length_c 124.073 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3W0N _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H17 N6 O12 P3' _chem_comp.formula_weight 506.196 _chem_comp.id ANP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ANP doub 13 n n PG O2G ANP sing 14 n n PG O3G ANP sing 15 n n PG N3B ANP sing 16 n n O2G HOG2 ANP sing 17 n n O3G HOG3 ANP sing 18 n n PB O1B ANP doub 19 n n PB O2B ANP sing 20 n n PB N3B ANP sing 21 n n PB O3A ANP sing 22 n n O2B HOB2 ANP sing 23 n n N3B HNB1 ANP sing 24 n n PA O1A ANP doub 25 n n PA O2A ANP sing 26 n n PA O3A ANP sing 27 n n PA O5' ANP sing 28 n n O2A HOA2 ANP sing 29 n n O5' C5' ANP sing 30 n n C5' C4' ANP sing 31 n n C5' "H5'1" ANP sing 32 n n C5' "H5'2" ANP sing 33 n n C4' O4' ANP sing 34 n n C4' C3' ANP sing 35 n n C4' H4' ANP sing 36 n n O4' C1' ANP sing 37 n n C3' O3' ANP sing 38 n n C3' C2' ANP sing 39 n n C3' H3' ANP sing 40 n n O3' HO3' ANP sing 41 n n C2' O2' ANP sing 42 n n C2' C1' ANP sing 43 n n C2' H2' ANP sing 44 n n O2' HO2' ANP sing 45 n n C1' N9 ANP sing 46 n n C1' H1' ANP sing 47 n n N9 C8 ANP sing 48 n y N9 C4 ANP sing 49 n y C8 N7 ANP doub 50 n y C8 H8 ANP sing 51 n n N7 C5 ANP sing 52 n y C5 C6 ANP sing 53 n y C5 C4 ANP doub 54 n y C6 N6 ANP sing 55 n n C6 N1 ANP doub 56 n y N6 HN61 ANP sing 57 n n N6 HN62 ANP sing 58 n n N1 C2 ANP sing 59 n y C2 N3 ANP doub 60 n y C2 H2 ANP sing 61 n n N3 C4 ANP sing 62 n y # _atom_sites.entry_id 3W0N _atom_sites.fract_transf_matrix[1][1] 0.014215 _atom_sites.fract_transf_matrix[1][2] 0.008207 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016414 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00806 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ANP A 1 401 1002 ANP ANP . C 3 HY0 A 1 402 900 HY0 HY0 . D 4 HOH A 1 501 221 HOH HOH . D 4 HOH A 2 502 222 HOH HOH . D 4 HOH A 3 503 1 HOH HOH . D 4 HOH A 4 504 2 HOH HOH . D 4 HOH A 5 505 3 HOH HOH . D 4 HOH A 6 506 4 HOH HOH . D 4 HOH A 7 507 5 HOH HOH . D 4 HOH A 8 508 6 HOH HOH . D 4 HOH A 9 509 7 HOH HOH . D 4 HOH A 10 510 8 HOH HOH . D 4 HOH A 11 511 9 HOH HOH . D 4 HOH A 12 512 10 HOH HOH . D 4 HOH A 13 513 11 HOH HOH . D 4 HOH A 14 514 12 HOH HOH . D 4 HOH A 15 515 13 HOH HOH . D 4 HOH A 16 516 14 HOH HOH . D 4 HOH A 17 517 15 HOH HOH . D 4 HOH A 18 518 16 HOH HOH . D 4 HOH A 19 519 17 HOH HOH . D 4 HOH A 20 520 18 HOH HOH . D 4 HOH A 21 521 19 HOH HOH . D 4 HOH A 22 522 20 HOH HOH . D 4 HOH A 23 523 21 HOH HOH . D 4 HOH A 24 524 22 HOH HOH . D 4 HOH A 25 525 23 HOH HOH . D 4 HOH A 26 526 24 HOH HOH . D 4 HOH A 27 527 25 HOH HOH . D 4 HOH A 28 528 26 HOH HOH . D 4 HOH A 29 529 27 HOH HOH . D 4 HOH A 30 530 28 HOH HOH . D 4 HOH A 31 531 29 HOH HOH . D 4 HOH A 32 532 30 HOH HOH . D 4 HOH A 33 533 31 HOH HOH . D 4 HOH A 34 534 32 HOH HOH . D 4 HOH A 35 535 33 HOH HOH . D 4 HOH A 36 536 34 HOH HOH . D 4 HOH A 37 537 35 HOH HOH . D 4 HOH A 38 538 36 HOH HOH . D 4 HOH A 39 539 37 HOH HOH . D 4 HOH A 40 540 38 HOH HOH . D 4 HOH A 41 541 39 HOH HOH . D 4 HOH A 42 542 40 HOH HOH . D 4 HOH A 43 543 41 HOH HOH . D 4 HOH A 44 544 42 HOH HOH . D 4 HOH A 45 545 43 HOH HOH . D 4 HOH A 46 546 44 HOH HOH . D 4 HOH A 47 547 45 HOH HOH . D 4 HOH A 48 548 46 HOH HOH . D 4 HOH A 49 549 47 HOH HOH . D 4 HOH A 50 550 48 HOH HOH . D 4 HOH A 51 551 49 HOH HOH . D 4 HOH A 52 552 50 HOH HOH . D 4 HOH A 53 553 51 HOH HOH . D 4 HOH A 54 554 52 HOH HOH . D 4 HOH A 55 555 53 HOH HOH . D 4 HOH A 56 556 54 HOH HOH . D 4 HOH A 57 557 55 HOH HOH . D 4 HOH A 58 558 56 HOH HOH . D 4 HOH A 59 559 57 HOH HOH . D 4 HOH A 60 560 58 HOH HOH . D 4 HOH A 61 561 59 HOH HOH . D 4 HOH A 62 562 60 HOH HOH . D 4 HOH A 63 563 61 HOH HOH . D 4 HOH A 64 564 62 HOH HOH . D 4 HOH A 65 565 63 HOH HOH . D 4 HOH A 66 566 64 HOH HOH . D 4 HOH A 67 567 65 HOH HOH . D 4 HOH A 68 568 66 HOH HOH . D 4 HOH A 69 569 67 HOH HOH . D 4 HOH A 70 570 68 HOH HOH . D 4 HOH A 71 571 69 HOH HOH . D 4 HOH A 72 572 70 HOH HOH . D 4 HOH A 73 573 71 HOH HOH . D 4 HOH A 74 574 72 HOH HOH . D 4 HOH A 75 575 73 HOH HOH . D 4 HOH A 76 576 74 HOH HOH . D 4 HOH A 77 577 75 HOH HOH . D 4 HOH A 78 578 76 HOH HOH . D 4 HOH A 79 579 77 HOH HOH . D 4 HOH A 80 580 78 HOH HOH . D 4 HOH A 81 581 79 HOH HOH . D 4 HOH A 82 582 80 HOH HOH . D 4 HOH A 83 583 81 HOH HOH . D 4 HOH A 84 584 82 HOH HOH . D 4 HOH A 85 585 83 HOH HOH . D 4 HOH A 86 586 84 HOH HOH . D 4 HOH A 87 587 85 HOH HOH . D 4 HOH A 88 588 86 HOH HOH . D 4 HOH A 89 589 87 HOH HOH . D 4 HOH A 90 590 88 HOH HOH . D 4 HOH A 91 591 89 HOH HOH . D 4 HOH A 92 592 90 HOH HOH . D 4 HOH A 93 593 91 HOH HOH . D 4 HOH A 94 594 92 HOH HOH . D 4 HOH A 95 595 93 HOH HOH . D 4 HOH A 96 596 94 HOH HOH . D 4 HOH A 97 597 95 HOH HOH . D 4 HOH A 98 598 96 HOH HOH . D 4 HOH A 99 599 97 HOH HOH . D 4 HOH A 100 600 98 HOH HOH . D 4 HOH A 101 601 99 HOH HOH . D 4 HOH A 102 602 100 HOH HOH . D 4 HOH A 103 603 101 HOH HOH . D 4 HOH A 104 604 102 HOH HOH . D 4 HOH A 105 605 104 HOH HOH . D 4 HOH A 106 606 105 HOH HOH . D 4 HOH A 107 607 106 HOH HOH . D 4 HOH A 108 608 107 HOH HOH . D 4 HOH A 109 609 108 HOH HOH . D 4 HOH A 110 610 109 HOH HOH . D 4 HOH A 111 611 110 HOH HOH . D 4 HOH A 112 612 111 HOH HOH . D 4 HOH A 113 613 112 HOH HOH . D 4 HOH A 114 614 113 HOH HOH . D 4 HOH A 115 615 114 HOH HOH . D 4 HOH A 116 616 115 HOH HOH . D 4 HOH A 117 617 116 HOH HOH . D 4 HOH A 118 618 117 HOH HOH . D 4 HOH A 119 619 118 HOH HOH . D 4 HOH A 120 620 119 HOH HOH . D 4 HOH A 121 621 120 HOH HOH . D 4 HOH A 122 622 121 HOH HOH . D 4 HOH A 123 623 122 HOH HOH . D 4 HOH A 124 624 123 HOH HOH . D 4 HOH A 125 625 124 HOH HOH . D 4 HOH A 126 626 125 HOH HOH . D 4 HOH A 127 627 126 HOH HOH . D 4 HOH A 128 628 127 HOH HOH . D 4 HOH A 129 629 128 HOH HOH . D 4 HOH A 130 630 129 HOH HOH . D 4 HOH A 131 631 130 HOH HOH . D 4 HOH A 132 632 131 HOH HOH . D 4 HOH A 133 633 132 HOH HOH . D 4 HOH A 134 634 133 HOH HOH . D 4 HOH A 135 635 134 HOH HOH . D 4 HOH A 136 636 135 HOH HOH . D 4 HOH A 137 637 136 HOH HOH . D 4 HOH A 138 638 137 HOH HOH . D 4 HOH A 139 639 138 HOH HOH . D 4 HOH A 140 640 139 HOH HOH . D 4 HOH A 141 641 140 HOH HOH . D 4 HOH A 142 642 141 HOH HOH . D 4 HOH A 143 643 142 HOH HOH . D 4 HOH A 144 644 143 HOH HOH . D 4 HOH A 145 645 144 HOH HOH . D 4 HOH A 146 646 145 HOH HOH . D 4 HOH A 147 647 146 HOH HOH . D 4 HOH A 148 648 147 HOH HOH . D 4 HOH A 149 649 148 HOH HOH . D 4 HOH A 150 650 149 HOH HOH . D 4 HOH A 151 651 150 HOH HOH . D 4 HOH A 152 652 151 HOH HOH . D 4 HOH A 153 653 152 HOH HOH . D 4 HOH A 154 654 153 HOH HOH . D 4 HOH A 155 655 154 HOH HOH . D 4 HOH A 156 656 155 HOH HOH . D 4 HOH A 157 657 156 HOH HOH . D 4 HOH A 158 658 157 HOH HOH . D 4 HOH A 159 659 158 HOH HOH . D 4 HOH A 160 660 159 HOH HOH . D 4 HOH A 161 661 160 HOH HOH . D 4 HOH A 162 662 161 HOH HOH . D 4 HOH A 163 663 162 HOH HOH . D 4 HOH A 164 664 163 HOH HOH . D 4 HOH A 165 665 164 HOH HOH . D 4 HOH A 166 666 165 HOH HOH . D 4 HOH A 167 667 166 HOH HOH . D 4 HOH A 168 668 167 HOH HOH . D 4 HOH A 169 669 168 HOH HOH . D 4 HOH A 170 670 169 HOH HOH . D 4 HOH A 171 671 171 HOH HOH . D 4 HOH A 172 672 172 HOH HOH . D 4 HOH A 173 673 173 HOH HOH . D 4 HOH A 174 674 174 HOH HOH . D 4 HOH A 175 675 175 HOH HOH . D 4 HOH A 176 676 176 HOH HOH . D 4 HOH A 177 677 177 HOH HOH . D 4 HOH A 178 678 178 HOH HOH . D 4 HOH A 179 679 179 HOH HOH . D 4 HOH A 180 680 180 HOH HOH . D 4 HOH A 181 681 181 HOH HOH . D 4 HOH A 182 682 182 HOH HOH . D 4 HOH A 183 683 183 HOH HOH . D 4 HOH A 184 684 184 HOH HOH . D 4 HOH A 185 685 185 HOH HOH . D 4 HOH A 186 686 186 HOH HOH . D 4 HOH A 187 687 187 HOH HOH . D 4 HOH A 188 688 188 HOH HOH . D 4 HOH A 189 689 189 HOH HOH . D 4 HOH A 190 690 190 HOH HOH . D 4 HOH A 191 691 191 HOH HOH . D 4 HOH A 192 692 192 HOH HOH . D 4 HOH A 193 693 193 HOH HOH . D 4 HOH A 194 694 194 HOH HOH . D 4 HOH A 195 695 195 HOH HOH . D 4 HOH A 196 696 196 HOH HOH . D 4 HOH A 197 697 197 HOH HOH . D 4 HOH A 198 698 198 HOH HOH . D 4 HOH A 199 699 199 HOH HOH . D 4 HOH A 200 700 200 HOH HOH . D 4 HOH A 201 701 201 HOH HOH . D 4 HOH A 202 702 202 HOH HOH . D 4 HOH A 203 703 204 HOH HOH . D 4 HOH A 204 704 205 HOH HOH . D 4 HOH A 205 705 206 HOH HOH . D 4 HOH A 206 706 207 HOH HOH . D 4 HOH A 207 707 208 HOH HOH . D 4 HOH A 208 708 209 HOH HOH . D 4 HOH A 209 709 210 HOH HOH . D 4 HOH A 210 710 211 HOH HOH . D 4 HOH A 211 711 212 HOH HOH . D 4 HOH A 212 712 213 HOH HOH . D 4 HOH A 213 713 214 HOH HOH . D 4 HOH A 214 714 215 HOH HOH . D 4 HOH A 215 715 216 HOH HOH . D 4 HOH A 216 716 217 HOH HOH . D 4 HOH A 217 717 218 HOH HOH . D 4 HOH A 218 718 219 HOH HOH . D 4 HOH A 219 719 220 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ANP . . . B 2 -43.796 16.491 -27.909 1 40.41 ? PG ANP 401 A 1 HETATM 2 O O1G ANP . . . B 2 -44.901 17.129 -28.987 1 38.95 ? O1G ANP 401 A 1 HETATM 3 O O2G ANP . . . B 2 -43.081 17.503 -26.922 1 42.19 ? O2G ANP 401 A 1 HETATM 4 O O3G ANP . . . B 2 -42.768 15.692 -28.68 1 33.9 ? O3G ANP 401 A 1 HETATM 5 P PB ANP . . . B 2 -46.168 15.678 -26.355 1 32.85 ? PB ANP 401 A 1 HETATM 6 O O1B ANP . . . B 2 -46.384 17.212 -26.427 1 34.06 ? O1B ANP 401 A 1 HETATM 7 O O2B ANP . . . B 2 -46.221 15.019 -24.957 1 25.41 ? O2B ANP 401 A 1 HETATM 8 N N3B ANP . . . B 2 -44.571 15.315 -26.882 1 33 ? N3B ANP 401 A 1 HETATM 9 P PA ANP . . . B 2 -48.017 15.429 -28.587 1 39.03 ? PA ANP 401 A 1 HETATM 10 O O1A ANP . . . B 2 -48 14.253 -29.596 1 40.78 ? O1A ANP 401 A 1 HETATM 11 O O2A ANP . . . B 2 -47.512 16.866 -29.009 1 40.65 ? O2A ANP 401 A 1 HETATM 12 O O3A ANP . . . B 2 -47.261 14.838 -27.221 1 40.39 ? O3A ANP 401 A 1 HETATM 13 O O5' ANP . . . B 2 -49.474 15.605 -27.93 1 41.34 ? O5' ANP 401 A 1 HETATM 14 C C5' ANP . . . B 2 -50.103 14.385 -27.52 1 35.37 ? C5' ANP 401 A 1 HETATM 15 C C4' ANP . . . B 2 -51.162 14.947 -26.536 1 33.6 ? C4' ANP 401 A 1 HETATM 16 O O4' ANP . . . B 2 -52.022 13.826 -26.211 1 34.5 ? O4' ANP 401 A 1 HETATM 17 C C3' ANP . . . B 2 -50.684 15.41 -25.137 1 37.17 ? C3' ANP 401 A 1 HETATM 18 O O3' ANP . . . B 2 -51.594 16.299 -24.454 1 33.19 ? O3' ANP 401 A 1 HETATM 19 C C2' ANP . . . B 2 -50.679 14.095 -24.302 1 33.28 ? C2' ANP 401 A 1 HETATM 20 O O2' ANP . . . B 2 -50.674 14.31 -22.867 1 25.01 ? O2' ANP 401 A 1 HETATM 21 C C1' ANP . . . B 2 -51.989 13.506 -24.766 1 31.24 ? C1' ANP 401 A 1 HETATM 22 N N9 ANP . . . B 2 -52.021 12.018 -24.75 1 26.87 ? N9 ANP 401 A 1 HETATM 23 C C8 ANP . . . B 2 -51.375 11.225 -25.602 1 23.48 ? C8 ANP 401 A 1 HETATM 24 N N7 ANP . . . B 2 -51.614 9.937 -25.368 1 22.99 ? N7 ANP 401 A 1 HETATM 25 C C5 ANP . . . B 2 -52.566 9.94 -24.38 1 25.75 ? C5 ANP 401 A 1 HETATM 26 C C6 ANP . . . B 2 -53.36 8.934 -23.709 1 24.8 ? C6 ANP 401 A 1 HETATM 27 N N6 ANP . . . B 2 -53.194 7.647 -24.022 1 22.72 ? N6 ANP 401 A 1 HETATM 28 N N1 ANP . . . B 2 -54.255 9.293 -22.776 1 22.72 ? N1 ANP 401 A 1 HETATM 29 C C2 ANP . . . B 2 -54.451 10.627 -22.423 1 25.67 ? C2 ANP 401 A 1 HETATM 30 N N3 ANP . . . B 2 -53.752 11.612 -23.03 1 21.52 ? N3 ANP 401 A 1 HETATM 31 C C4 ANP . . . B 2 -52.819 11.317 -23.982 1 25.36 ? C4 ANP 401 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 20 _model_server_stats.query_time_ms 283 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 31 #