data_3W1G # _model_server_result.job_id GFHPnjstDWBIK3TnWeaqJA _model_server_result.datetime_utc '2024-11-14 04:37:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3w1g # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":701}' # _entry.id 3W1G # _exptl.entry_id 3W1G _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 507.181 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3W1G _cell.length_a 68.26 _cell.length_b 105.48 _cell.length_c 121.08 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3W1G _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 2 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 70 n n PG O2G ATP sing 71 n n PG O3G ATP sing 72 n n PG O3B ATP sing 73 n n O2G HOG2 ATP sing 74 n n O3G HOG3 ATP sing 75 n n PB O1B ATP doub 76 n n PB O2B ATP sing 77 n n PB O3B ATP sing 78 n n PB O3A ATP sing 79 n n O2B HOB2 ATP sing 80 n n PA O1A ATP doub 81 n n PA O2A ATP sing 82 n n PA O3A ATP sing 83 n n PA O5' ATP sing 84 n n O2A HOA2 ATP sing 85 n n O5' C5' ATP sing 86 n n C5' C4' ATP sing 87 n n C5' "H5'1" ATP sing 88 n n C5' "H5'2" ATP sing 89 n n C4' O4' ATP sing 90 n n C4' C3' ATP sing 91 n n C4' H4' ATP sing 92 n n O4' C1' ATP sing 93 n n C3' O3' ATP sing 94 n n C3' C2' ATP sing 95 n n C3' H3' ATP sing 96 n n O3' HO3' ATP sing 97 n n C2' O2' ATP sing 98 n n C2' C1' ATP sing 99 n n C2' H2' ATP sing 100 n n O2' HO2' ATP sing 101 n n C1' N9 ATP sing 102 n n C1' H1' ATP sing 103 n n N9 C8 ATP sing 104 n y N9 C4 ATP sing 105 n y C8 N7 ATP doub 106 n y C8 H8 ATP sing 107 n n N7 C5 ATP sing 108 n y C5 C6 ATP sing 109 n y C5 C4 ATP doub 110 n y C6 N6 ATP sing 111 n n C6 N1 ATP doub 112 n y N6 HN61 ATP sing 113 n n N6 HN62 ATP sing 114 n n N1 C2 ATP sing 115 n y C2 N3 ATP doub 116 n y C2 H2 ATP sing 117 n n N3 C4 ATP sing 118 n y # _atom_sites.entry_id 3W1G _atom_sites.fract_transf_matrix[1][1] 0.01465 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00948 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008259 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 ATP A 1 701 1 ATP ATP . D 4 SO4 A 1 702 1 SO4 SO4 . E 4 SO4 A 1 703 2 SO4 SO4 . F 4 SO4 A 1 704 3 SO4 SO4 . G 4 SO4 A 1 705 4 SO4 SO4 . H 4 SO4 A 1 706 5 SO4 SO4 . I 4 SO4 A 1 707 6 SO4 SO4 . J 4 SO4 A 1 708 7 SO4 SO4 . K 4 SO4 A 1 709 8 SO4 SO4 . L 4 SO4 A 1 710 9 SO4 SO4 . M 4 SO4 A 1 711 10 SO4 SO4 . N 4 SO4 A 1 712 11 SO4 SO4 . O 4 SO4 A 1 713 12 SO4 SO4 . P 4 SO4 A 1 714 13 SO4 SO4 . Q 4 SO4 A 1 715 14 SO4 SO4 . R 4 SO4 A 1 716 15 SO4 SO4 . S 5 HOH A 1 801 1 HOH HOH . S 5 HOH A 2 802 2 HOH HOH . S 5 HOH A 3 803 3 HOH HOH . S 5 HOH A 4 804 4 HOH HOH . S 5 HOH A 5 805 5 HOH HOH . S 5 HOH A 6 806 6 HOH HOH . S 5 HOH A 7 807 7 HOH HOH . S 5 HOH A 8 808 8 HOH HOH . S 5 HOH A 9 809 9 HOH HOH . S 5 HOH A 10 810 10 HOH HOH . S 5 HOH A 11 811 11 HOH HOH . S 5 HOH A 12 812 12 HOH HOH . S 5 HOH A 13 813 13 HOH HOH . S 5 HOH A 14 814 14 HOH HOH . S 5 HOH A 15 815 15 HOH HOH . S 5 HOH A 16 816 16 HOH HOH . S 5 HOH A 17 817 17 HOH HOH . S 5 HOH A 18 818 18 HOH HOH . S 5 HOH A 19 819 19 HOH HOH . S 5 HOH A 20 820 20 HOH HOH . S 5 HOH A 21 821 21 HOH HOH . S 5 HOH A 22 822 22 HOH HOH . S 5 HOH A 23 823 23 HOH HOH . S 5 HOH A 24 824 24 HOH HOH . S 5 HOH A 25 825 25 HOH HOH . S 5 HOH A 26 826 26 HOH HOH . S 5 HOH A 27 827 27 HOH HOH . S 5 HOH A 28 828 28 HOH HOH . S 5 HOH A 29 829 29 HOH HOH . S 5 HOH A 30 830 30 HOH HOH . S 5 HOH A 31 831 31 HOH HOH . S 5 HOH A 32 832 32 HOH HOH . S 5 HOH A 33 833 33 HOH HOH . S 5 HOH A 34 834 34 HOH HOH . S 5 HOH A 35 835 35 HOH HOH . S 5 HOH A 36 836 36 HOH HOH . S 5 HOH A 37 837 37 HOH HOH . S 5 HOH A 38 838 38 HOH HOH . S 5 HOH A 39 839 39 HOH HOH . S 5 HOH A 40 840 40 HOH HOH . S 5 HOH A 41 841 41 HOH HOH . S 5 HOH A 42 842 42 HOH HOH . S 5 HOH A 43 843 43 HOH HOH . S 5 HOH A 44 844 44 HOH HOH . S 5 HOH A 45 845 45 HOH HOH . S 5 HOH A 46 846 46 HOH HOH . S 5 HOH A 47 847 47 HOH HOH . S 5 HOH A 48 848 48 HOH HOH . S 5 HOH A 49 849 49 HOH HOH . S 5 HOH A 50 850 50 HOH HOH . S 5 HOH A 51 851 51 HOH HOH . S 5 HOH A 52 852 52 HOH HOH . S 5 HOH A 53 853 53 HOH HOH . S 5 HOH A 54 854 54 HOH HOH . S 5 HOH A 55 855 55 HOH HOH . S 5 HOH A 56 856 56 HOH HOH . S 5 HOH A 57 857 57 HOH HOH . S 5 HOH A 58 858 58 HOH HOH . S 5 HOH A 59 859 59 HOH HOH . S 5 HOH A 60 860 60 HOH HOH . S 5 HOH A 61 861 61 HOH HOH . S 5 HOH A 62 862 62 HOH HOH . S 5 HOH A 63 863 63 HOH HOH . S 5 HOH A 64 864 64 HOH HOH . S 5 HOH A 65 865 65 HOH HOH . S 5 HOH A 66 866 66 HOH HOH . S 5 HOH A 67 867 67 HOH HOH . S 5 HOH A 68 868 68 HOH HOH . S 5 HOH A 69 869 69 HOH HOH . S 5 HOH A 70 870 70 HOH HOH . S 5 HOH A 71 871 71 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . C 3 22.516 25.777 144.489 1 109.21 ? PG ATP 701 A 1 HETATM 2 O O1G ATP . . . C 3 23.852 26.448 144.69 1 115.44 ? O1G ATP 701 A 1 HETATM 3 O O2G ATP . . . C 3 22.681 24.315 144.177 1 96.98 ? O2G ATP 701 A 1 HETATM 4 O O3G ATP . . . C 3 21.482 26.066 145.557 1 112.42 ? O3G ATP 701 A 1 HETATM 5 P PB ATP . . . C 3 20.369 26.342 142.692 1 84.34 ? PB ATP 701 A 1 HETATM 6 O O1B ATP . . . C 3 19.583 27.448 143.351 1 85.61 ? O1B ATP 701 A 1 HETATM 7 O O2B ATP . . . C 3 20.278 26.153 141.202 1 84.69 ? O2B ATP 701 A 1 HETATM 8 O O3B ATP . . . C 3 21.923 26.463 143.136 1 178.26 ? O3B ATP 701 A 1 HETATM 9 P PA ATP . . . C 3 18.771 24.654 144.29 1 143.86 ? PA ATP 701 A 1 HETATM 10 O O1A ATP . . . C 3 18.702 25.772 145.3 1 146.44 ? O1A ATP 701 A 1 HETATM 11 O O2A ATP . . . C 3 17.584 24.383 143.405 1 142.88 ? O2A ATP 701 A 1 HETATM 12 O O3A ATP . . . C 3 20.043 24.912 143.346 1 85.27 ? O3A ATP 701 A 1 HETATM 13 O O5' ATP . . . C 3 19.202 23.31 145.079 1 98.67 ? O5' ATP 701 A 1 HETATM 14 C C5' ATP . . . C 3 20.174 22.4 144.547 1 97.64 ? C5' ATP 701 A 1 HETATM 15 C C4' ATP . . . C 3 20.826 21.593 145.672 1 94.49 ? C4' ATP 701 A 1 HETATM 16 O O4' ATP . . . C 3 20.327 20.253 145.694 1 96.33 ? O4' ATP 701 A 1 HETATM 17 C C3' ATP . . . C 3 22.333 21.425 145.526 1 92.53 ? C3' ATP 701 A 1 HETATM 18 O O3' ATP . . . C 3 23.079 22.5 146.1 1 98.83 ? O3' ATP 701 A 1 HETATM 19 C C2' ATP . . . C 3 22.619 20.134 146.252 1 88.93 ? C2' ATP 701 A 1 HETATM 20 O O2' ATP . . . C 3 22.78 20.4 147.648 1 83.1 ? O2' ATP 701 A 1 HETATM 21 C C1' ATP . . . C 3 21.36 19.318 146.027 1 94.29 ? C1' ATP 701 A 1 HETATM 22 N N9 ATP . . . C 3 21.616 18.44 144.857 1 94.72 ? N9 ATP 701 A 1 HETATM 23 C C8 ATP . . . C 3 21.212 18.695 143.598 1 97.64 ? C8 ATP 701 A 1 HETATM 24 N N7 ATP . . . C 3 21.601 17.721 142.736 1 97.85 ? N7 ATP 701 A 1 HETATM 25 C C5 ATP . . . C 3 22.287 16.808 143.45 1 98.23 ? C5 ATP 701 A 1 HETATM 26 C C6 ATP . . . C 3 22.974 15.525 143.156 1 96.78 ? C6 ATP 701 A 1 HETATM 27 N N6 ATP . . . C 3 23.01 15.017 141.9 1 90.58 ? N6 ATP 701 A 1 HETATM 28 N N1 ATP . . . C 3 23.563 14.882 144.185 1 90.8 ? N1 ATP 701 A 1 HETATM 29 C C2 ATP . . . C 3 23.531 15.381 145.434 1 87.96 ? C2 ATP 701 A 1 HETATM 30 N N3 ATP . . . C 3 22.93 16.535 145.776 1 90.56 ? N3 ATP 701 A 1 HETATM 31 C C4 ATP . . . C 3 22.295 17.287 144.846 1 95.08 ? C4 ATP 701 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 282 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 31 #