data_3W21 # _model_server_result.job_id HxTp3Mub9ihhoomqV5jkkg _model_server_result.datetime_utc '2025-03-06 09:20:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3w21 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":301}' # _entry.id 3W21 # _exptl.entry_id 3W21 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3W21 _cell.length_a 49.593 _cell.length_b 71.143 _cell.length_c 147.876 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3W21 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 101 A CYS 101 1_555 B SG CYS 101 B CYS 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? covale ? covale1 A C MSE 1 A MSE 1 1_555 A N GLN 2 A GLN 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale2 A C LEU 9 A LEU 9 1_555 A N MSE 10 A MSE 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.347 ? covale ? covale3 A C MSE 10 A MSE 10 1_555 A N ARG 11 A ARG 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale4 A C HIS 20 A HIS 20 1_555 A N MSE 21 A MSE 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.341 ? covale ? covale5 A C MSE 21 A MSE 21 1_555 A N THR 22 A THR 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale6 A C VAL 39 A VAL 39 1_555 A N MSE 40 A MSE 40 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale7 A C MSE 40 A MSE 40 1_555 A N ASP 41 A ASP 41 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale8 A C GLY 192 A GLY 192 1_555 A N MSE 193 A MSE 193 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? covale ? covale9 A C MSE 193 A MSE 193 1_555 A N VAL 194 A VAL 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.32 ? covale ? covale10 A C VAL 194 A VAL 194 1_555 A N MSE 195 A MSE 195 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale11 A C MSE 195 A MSE 195 1_555 A N TRP 196 A TRP 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? covale ? covale12 A C GLU 208 A GLU 208 1_555 A N MSE 209 A MSE 209 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.345 ? covale ? covale13 A C MSE 209 A MSE 209 1_555 A N HIS 210 A HIS 210 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale14 A C ILE 228 A ILE 228 1_555 A N MSE 229 A MSE 229 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? covale ? covale15 A C MSE 229 A MSE 229 1_555 A N LEU 230 A LEU 230 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale16 A C THR 257 A THR 257 1_555 A N MSE 258 A MSE 258 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale17 A C MSE 258 A MSE 258 1_555 A N GLY 259 A GLY 259 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale18 A C ARG 270 A ARG 270 1_555 A N MSE 271 A MSE 271 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.343 ? covale ? covale19 A C MSE 271 A MSE 271 1_555 A N PHE 272 A PHE 272 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? covale ? covale20 B C MSE 1 B MSE 1 1_555 B N GLN 2 B GLN 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.321 ? covale ? covale21 B C LEU 9 B LEU 9 1_555 B N MSE 10 B MSE 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? covale ? covale22 B C MSE 10 B MSE 10 1_555 B N ARG 11 B ARG 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale23 B C HIS 20 B HIS 20 1_555 B N MSE 21 B MSE 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale24 B C MSE 21 B MSE 21 1_555 B N THR 22 B THR 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale25 B C VAL 39 B VAL 39 1_555 B N MSE 40 B MSE 40 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? covale ? covale26 B C MSE 40 B MSE 40 1_555 B N ASP 41 B ASP 41 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.346 ? covale ? covale27 B C GLY 192 B GLY 192 1_555 B N MSE 193 B MSE 193 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale28 B C MSE 193 B MSE 193 1_555 B N VAL 194 B VAL 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale29 B C VAL 194 B VAL 194 1_555 B N MSE 195 B MSE 195 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? covale ? covale30 B C MSE 195 B MSE 195 1_555 B N TRP 196 B TRP 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale31 B C GLU 208 B GLU 208 1_555 B N MSE 209 B MSE 209 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale32 B C MSE 209 B MSE 209 1_555 B N HIS 210 B HIS 210 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale33 B C ILE 228 B ILE 228 1_555 B N MSE 229 B MSE 229 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? covale ? covale34 B C MSE 229 B MSE 229 1_555 B N LEU 230 B LEU 230 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? covale ? covale35 B C THR 257 B THR 257 1_555 B N MSE 258 B MSE 258 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.344 ? covale ? covale36 B C MSE 258 B MSE 258 1_555 B N GLY 259 B GLY 259 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale37 B C ARG 270 B ARG 270 1_555 B N MSE 271 B MSE 271 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.318 ? covale ? covale38 B C MSE 271 B MSE 271 1_555 B N PHE 272 B PHE 272 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? metalc ? metalc1 A NE2 HIS 155 A HIS 155 1_555 C ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.244 ? metalc ? metalc2 A OD2 ASP 157 A ASP 157 1_555 C ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.089 ? metalc ? metalc3 A NE2 HIS 246 A HIS 246 1_555 C ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.117 ? metalc ? metalc4 C ZN ZN . A ZN 301 1_555 D O1 AKG . A AKG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.942 ? metalc ? metalc5 C ZN ZN . A ZN 301 1_555 D O5 AKG . A AKG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.638 ? metalc ? metalc6 B NE2 HIS 155 B HIS 155 1_555 E ZN ZN . B ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.523 ? metalc ? metalc7 B NE2 HIS 246 B HIS 246 1_555 E ZN ZN . B ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.15 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3W21 _atom_sites.fract_transf_matrix[1][1] 0.020164 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014056 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006762 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ZN A 1 301 280 ZN ZN . D 3 AKG A 1 302 281 AKG AKG . E 2 ZN B 1 301 280 ZN ZN . F 4 HOH A 1 401 3 HOH HOH . F 4 HOH A 2 402 4 HOH HOH . F 4 HOH A 3 403 6 HOH HOH . F 4 HOH A 4 404 7 HOH HOH . F 4 HOH A 5 405 8 HOH HOH . F 4 HOH A 6 406 9 HOH HOH . F 4 HOH A 7 407 13 HOH HOH . F 4 HOH A 8 408 14 HOH HOH . F 4 HOH A 9 409 15 HOH HOH . F 4 HOH A 10 410 20 HOH HOH . F 4 HOH A 11 411 22 HOH HOH . F 4 HOH A 12 412 24 HOH HOH . F 4 HOH A 13 413 25 HOH HOH . F 4 HOH A 14 414 26 HOH HOH . F 4 HOH A 15 415 27 HOH HOH . F 4 HOH A 16 416 28 HOH HOH . F 4 HOH A 17 417 29 HOH HOH . F 4 HOH A 18 418 31 HOH HOH . F 4 HOH A 19 419 32 HOH HOH . F 4 HOH A 20 420 33 HOH HOH . F 4 HOH A 21 421 34 HOH HOH . F 4 HOH A 22 422 38 HOH HOH . F 4 HOH A 23 423 39 HOH HOH . F 4 HOH A 24 424 42 HOH HOH . F 4 HOH A 25 425 43 HOH HOH . F 4 HOH A 26 426 45 HOH HOH . F 4 HOH A 27 427 48 HOH HOH . F 4 HOH A 28 428 49 HOH HOH . F 4 HOH A 29 429 52 HOH HOH . F 4 HOH A 30 430 55 HOH HOH . F 4 HOH A 31 431 56 HOH HOH . F 4 HOH A 32 432 59 HOH HOH . F 4 HOH A 33 433 60 HOH HOH . F 4 HOH A 34 434 65 HOH HOH . F 4 HOH A 35 435 66 HOH HOH . F 4 HOH A 36 436 69 HOH HOH . F 4 HOH A 37 437 72 HOH HOH . F 4 HOH A 38 438 73 HOH HOH . F 4 HOH A 39 439 75 HOH HOH . F 4 HOH A 40 440 76 HOH HOH . F 4 HOH A 41 441 77 HOH HOH . F 4 HOH A 42 442 78 HOH HOH . F 4 HOH A 43 443 81 HOH HOH . F 4 HOH A 44 444 82 HOH HOH . F 4 HOH A 45 445 86 HOH HOH . F 4 HOH A 46 446 89 HOH HOH . F 4 HOH A 47 447 90 HOH HOH . F 4 HOH A 48 448 94 HOH HOH . F 4 HOH A 49 449 95 HOH HOH . F 4 HOH A 50 450 97 HOH HOH . F 4 HOH A 51 451 98 HOH HOH . F 4 HOH A 52 452 105 HOH HOH . F 4 HOH A 53 453 109 HOH HOH . F 4 HOH A 54 454 112 HOH HOH . F 4 HOH A 55 455 113 HOH HOH . F 4 HOH A 56 456 117 HOH HOH . F 4 HOH A 57 457 120 HOH HOH . F 4 HOH A 58 458 124 HOH HOH . F 4 HOH A 59 459 126 HOH HOH . F 4 HOH A 60 460 129 HOH HOH . F 4 HOH A 61 461 134 HOH HOH . F 4 HOH A 62 462 141 HOH HOH . F 4 HOH A 63 463 145 HOH HOH . F 4 HOH A 64 464 148 HOH HOH . F 4 HOH A 65 465 149 HOH HOH . F 4 HOH A 66 466 151 HOH HOH . F 4 HOH A 67 467 154 HOH HOH . F 4 HOH A 68 468 155 HOH HOH . F 4 HOH A 69 469 156 HOH HOH . F 4 HOH A 70 470 158 HOH HOH . F 4 HOH A 71 471 160 HOH HOH . F 4 HOH A 72 472 170 HOH HOH . F 4 HOH A 73 473 178 HOH HOH . F 4 HOH A 74 474 182 HOH HOH . F 4 HOH A 75 475 185 HOH HOH . G 4 HOH B 1 401 1 HOH HOH . G 4 HOH B 2 402 2 HOH HOH . G 4 HOH B 3 403 5 HOH HOH . G 4 HOH B 4 404 10 HOH HOH . G 4 HOH B 5 405 11 HOH HOH . G 4 HOH B 6 406 12 HOH HOH . G 4 HOH B 7 407 17 HOH HOH . G 4 HOH B 8 408 18 HOH HOH . G 4 HOH B 9 409 19 HOH HOH . G 4 HOH B 10 410 21 HOH HOH . G 4 HOH B 11 411 23 HOH HOH . G 4 HOH B 12 412 30 HOH HOH . G 4 HOH B 13 413 35 HOH HOH . G 4 HOH B 14 414 36 HOH HOH . G 4 HOH B 15 415 41 HOH HOH . G 4 HOH B 16 416 44 HOH HOH . G 4 HOH B 17 417 46 HOH HOH . G 4 HOH B 18 418 47 HOH HOH . G 4 HOH B 19 419 50 HOH HOH . G 4 HOH B 20 420 51 HOH HOH . G 4 HOH B 21 421 53 HOH HOH . G 4 HOH B 22 422 54 HOH HOH . G 4 HOH B 23 423 57 HOH HOH . G 4 HOH B 24 424 58 HOH HOH . G 4 HOH B 25 425 61 HOH HOH . G 4 HOH B 26 426 63 HOH HOH . G 4 HOH B 27 427 68 HOH HOH . G 4 HOH B 28 428 70 HOH HOH . G 4 HOH B 29 429 71 HOH HOH . G 4 HOH B 30 430 74 HOH HOH . G 4 HOH B 31 431 80 HOH HOH . G 4 HOH B 32 432 83 HOH HOH . G 4 HOH B 33 433 84 HOH HOH . G 4 HOH B 34 434 85 HOH HOH . G 4 HOH B 35 435 87 HOH HOH . G 4 HOH B 36 436 91 HOH HOH . G 4 HOH B 37 437 93 HOH HOH . G 4 HOH B 38 438 99 HOH HOH . G 4 HOH B 39 439 100 HOH HOH . G 4 HOH B 40 440 101 HOH HOH . G 4 HOH B 41 441 103 HOH HOH . G 4 HOH B 42 442 106 HOH HOH . G 4 HOH B 43 443 108 HOH HOH . G 4 HOH B 44 444 110 HOH HOH . G 4 HOH B 45 445 114 HOH HOH . G 4 HOH B 46 446 115 HOH HOH . G 4 HOH B 47 447 116 HOH HOH . G 4 HOH B 48 448 118 HOH HOH . G 4 HOH B 49 449 121 HOH HOH . G 4 HOH B 50 450 123 HOH HOH . G 4 HOH B 51 451 125 HOH HOH . G 4 HOH B 52 452 128 HOH HOH . G 4 HOH B 53 453 130 HOH HOH . G 4 HOH B 54 454 131 HOH HOH . G 4 HOH B 55 455 132 HOH HOH . G 4 HOH B 56 456 135 HOH HOH . G 4 HOH B 57 457 137 HOH HOH . G 4 HOH B 58 458 142 HOH HOH . G 4 HOH B 59 459 146 HOH HOH . G 4 HOH B 60 460 147 HOH HOH . G 4 HOH B 61 461 159 HOH HOH . G 4 HOH B 62 462 161 HOH HOH . G 4 HOH B 63 463 184 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 2 _atom_site.Cartn_x -14.823 _atom_site.Cartn_y 4.493 _atom_site.Cartn_z -13.356 _atom_site.occupancy 0.5 _atom_site.B_iso_or_equiv 33.01 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 301 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 24 _model_server_stats.query_time_ms 335 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #