data_3W2E # _model_server_result.job_id p1NORNsrZ8TW1ysOjc4rOw _model_server_result.datetime_utc '2024-10-14 07:24:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3w2e # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":302}' # _entry.id 3W2E # _exptl.entry_id 3W2E _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 663.425 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description NICOTINAMIDE-ADENINE-DINUCLEOTIDE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3W2E _cell.length_a 57.704 _cell.length_b 73.094 _cell.length_c 85.493 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3W2E _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H27 N7 O14 P2' _chem_comp.formula_weight 663.425 _chem_comp.id NAD _chem_comp.mon_nstd_flag . _chem_comp.name NICOTINAMIDE-ADENINE-DINUCLEOTIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAD doub 328 n n PA O2A NAD sing 329 n n PA O5B NAD sing 330 n n PA O3 NAD sing 331 n n O2A HOA2 NAD sing 332 n n O5B C5B NAD sing 333 n n C5B C4B NAD sing 334 n n C5B H51A NAD sing 335 n n C5B H52A NAD sing 336 n n C4B O4B NAD sing 337 n n C4B C3B NAD sing 338 n n C4B H4B NAD sing 339 n n O4B C1B NAD sing 340 n n C3B O3B NAD sing 341 n n C3B C2B NAD sing 342 n n C3B H3B NAD sing 343 n n O3B HO3A NAD sing 344 n n C2B O2B NAD sing 345 n n C2B C1B NAD sing 346 n n C2B H2B NAD sing 347 n n O2B HO2A NAD sing 348 n n C1B N9A NAD sing 349 n n C1B H1B NAD sing 350 n n N9A C8A NAD sing 351 n y N9A C4A NAD sing 352 n y C8A N7A NAD doub 353 n y C8A H8A NAD sing 354 n n N7A C5A NAD sing 355 n y C5A C6A NAD sing 356 n y C5A C4A NAD doub 357 n y C6A N6A NAD sing 358 n n C6A N1A NAD doub 359 n y N6A H61A NAD sing 360 n n N6A H62A NAD sing 361 n n N1A C2A NAD sing 362 n y C2A N3A NAD doub 363 n y C2A H2A NAD sing 364 n n N3A C4A NAD sing 365 n y O3 PN NAD sing 366 n n PN O1N NAD doub 367 n n PN O2N NAD sing 368 n n PN O5D NAD sing 369 n n O5D C5D NAD sing 370 n n C5D C4D NAD sing 371 n n C5D H51N NAD sing 372 n n C5D H52N NAD sing 373 n n C4D O4D NAD sing 374 n n C4D C3D NAD sing 375 n n C4D H4D NAD sing 376 n n O4D C1D NAD sing 377 n n C3D O3D NAD sing 378 n n C3D C2D NAD sing 379 n n C3D H3D NAD sing 380 n n O3D HO3N NAD sing 381 n n C2D O2D NAD sing 382 n n C2D C1D NAD sing 383 n n C2D H2D NAD sing 384 n n O2D HO2N NAD sing 385 n n C1D N1N NAD sing 386 n n C1D H1D NAD sing 387 n n N1N C2N NAD sing 388 n y N1N C6N NAD doub 389 n y C2N C3N NAD doub 390 n y C2N H2N NAD sing 391 n n C3N C7N NAD sing 392 n n C3N C4N NAD sing 393 n y C7N O7N NAD doub 394 n n C7N N7N NAD sing 395 n n N7N H71N NAD sing 396 n n N7N H72N NAD sing 397 n n C4N C5N NAD doub 398 n y C4N H4N NAD sing 399 n n C5N C6N NAD sing 400 n y C5N H5N NAD sing 401 n n C6N H6N NAD sing 402 n n # _atom_sites.entry_id 3W2E _atom_sites.fract_transf_matrix[1][1] 0.01733 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013681 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011697 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FAD A 1 301 301 FAD FAD . C 3 NAD A 1 302 302 NAD NAD . D 4 HOH A 1 401 401 HOH HOH . D 4 HOH A 2 402 402 HOH HOH . D 4 HOH A 3 403 403 HOH HOH . D 4 HOH A 4 404 404 HOH HOH . D 4 HOH A 5 405 405 HOH HOH . D 4 HOH A 6 406 406 HOH HOH . D 4 HOH A 7 407 407 HOH HOH . D 4 HOH A 8 408 408 HOH HOH . D 4 HOH A 9 409 409 HOH HOH . D 4 HOH A 10 410 410 HOH HOH . D 4 HOH A 11 411 411 HOH HOH . D 4 HOH A 12 412 412 HOH HOH . D 4 HOH A 13 413 413 HOH HOH . D 4 HOH A 14 414 414 HOH HOH . D 4 HOH A 15 415 415 HOH HOH . D 4 HOH A 16 416 416 HOH HOH . D 4 HOH A 17 417 417 HOH HOH . D 4 HOH A 18 418 418 HOH HOH . D 4 HOH A 19 419 419 HOH HOH . D 4 HOH A 20 420 420 HOH HOH . D 4 HOH A 21 421 421 HOH HOH . D 4 HOH A 22 422 422 HOH HOH . D 4 HOH A 23 423 423 HOH HOH . D 4 HOH A 24 424 424 HOH HOH . D 4 HOH A 25 425 425 HOH HOH . D 4 HOH A 26 426 426 HOH HOH . D 4 HOH A 27 427 427 HOH HOH . D 4 HOH A 28 428 428 HOH HOH . D 4 HOH A 29 429 429 HOH HOH . D 4 HOH A 30 430 430 HOH HOH . D 4 HOH A 31 431 431 HOH HOH . D 4 HOH A 32 432 432 HOH HOH . D 4 HOH A 33 433 433 HOH HOH . D 4 HOH A 34 434 434 HOH HOH . D 4 HOH A 35 435 435 HOH HOH . D 4 HOH A 36 436 436 HOH HOH . D 4 HOH A 37 437 437 HOH HOH . D 4 HOH A 38 438 438 HOH HOH . D 4 HOH A 39 439 439 HOH HOH . D 4 HOH A 40 440 440 HOH HOH . D 4 HOH A 41 441 441 HOH HOH . D 4 HOH A 42 442 442 HOH HOH . D 4 HOH A 43 443 443 HOH HOH . D 4 HOH A 44 444 444 HOH HOH . D 4 HOH A 45 445 445 HOH HOH . D 4 HOH A 46 446 446 HOH HOH . D 4 HOH A 47 447 447 HOH HOH . D 4 HOH A 48 448 448 HOH HOH . D 4 HOH A 49 449 449 HOH HOH . D 4 HOH A 50 450 450 HOH HOH . D 4 HOH A 51 451 451 HOH HOH . D 4 HOH A 52 452 452 HOH HOH . D 4 HOH A 53 453 453 HOH HOH . D 4 HOH A 54 454 454 HOH HOH . D 4 HOH A 55 455 455 HOH HOH . D 4 HOH A 56 456 456 HOH HOH . D 4 HOH A 57 457 457 HOH HOH . D 4 HOH A 58 458 458 HOH HOH . D 4 HOH A 59 459 459 HOH HOH . D 4 HOH A 60 460 460 HOH HOH . D 4 HOH A 61 461 461 HOH HOH . D 4 HOH A 62 462 462 HOH HOH . D 4 HOH A 63 463 463 HOH HOH . D 4 HOH A 64 464 464 HOH HOH . D 4 HOH A 65 465 465 HOH HOH . D 4 HOH A 66 466 466 HOH HOH . D 4 HOH A 67 467 467 HOH HOH . D 4 HOH A 68 468 468 HOH HOH . D 4 HOH A 69 469 469 HOH HOH . D 4 HOH A 70 470 470 HOH HOH . D 4 HOH A 71 471 471 HOH HOH . D 4 HOH A 72 472 472 HOH HOH . D 4 HOH A 73 473 473 HOH HOH . D 4 HOH A 74 474 474 HOH HOH . D 4 HOH A 75 475 475 HOH HOH . D 4 HOH A 76 476 476 HOH HOH . D 4 HOH A 77 477 477 HOH HOH . D 4 HOH A 78 478 478 HOH HOH . D 4 HOH A 79 479 479 HOH HOH . D 4 HOH A 80 480 480 HOH HOH . D 4 HOH A 81 481 481 HOH HOH . D 4 HOH A 82 482 482 HOH HOH . D 4 HOH A 83 483 483 HOH HOH . D 4 HOH A 84 484 484 HOH HOH . D 4 HOH A 85 485 485 HOH HOH . D 4 HOH A 86 486 486 HOH HOH . D 4 HOH A 87 487 487 HOH HOH . D 4 HOH A 88 488 488 HOH HOH . D 4 HOH A 89 489 489 HOH HOH . D 4 HOH A 90 490 490 HOH HOH . D 4 HOH A 91 491 491 HOH HOH . D 4 HOH A 92 492 492 HOH HOH . D 4 HOH A 93 493 493 HOH HOH . D 4 HOH A 94 494 494 HOH HOH . D 4 HOH A 95 495 495 HOH HOH . D 4 HOH A 96 496 496 HOH HOH . D 4 HOH A 97 497 497 HOH HOH . D 4 HOH A 98 498 498 HOH HOH . D 4 HOH A 99 499 499 HOH HOH . D 4 HOH A 100 500 500 HOH HOH . D 4 HOH A 101 501 501 HOH HOH . D 4 HOH A 102 502 502 HOH HOH . D 4 HOH A 103 503 503 HOH HOH . D 4 HOH A 104 504 504 HOH HOH . D 4 HOH A 105 505 505 HOH HOH . D 4 HOH A 106 506 506 HOH HOH . D 4 HOH A 107 507 507 HOH HOH . D 4 HOH A 108 508 508 HOH HOH . D 4 HOH A 109 509 509 HOH HOH . D 4 HOH A 110 510 510 HOH HOH . D 4 HOH A 111 511 511 HOH HOH . D 4 HOH A 112 512 512 HOH HOH . D 4 HOH A 113 513 513 HOH HOH . D 4 HOH A 114 514 514 HOH HOH . D 4 HOH A 115 515 515 HOH HOH . D 4 HOH A 116 516 516 HOH HOH . D 4 HOH A 117 517 517 HOH HOH . D 4 HOH A 118 518 518 HOH HOH . D 4 HOH A 119 519 519 HOH HOH . D 4 HOH A 120 520 520 HOH HOH . D 4 HOH A 121 521 521 HOH HOH . D 4 HOH A 122 522 522 HOH HOH . D 4 HOH A 123 523 523 HOH HOH . D 4 HOH A 124 524 524 HOH HOH . D 4 HOH A 125 525 525 HOH HOH . D 4 HOH A 126 526 526 HOH HOH . D 4 HOH A 127 527 527 HOH HOH . D 4 HOH A 128 528 528 HOH HOH . D 4 HOH A 129 529 529 HOH HOH . D 4 HOH A 130 530 530 HOH HOH . D 4 HOH A 131 531 531 HOH HOH . D 4 HOH A 132 532 532 HOH HOH . D 4 HOH A 133 533 533 HOH HOH . D 4 HOH A 134 534 534 HOH HOH . D 4 HOH A 135 535 535 HOH HOH . D 4 HOH A 136 536 536 HOH HOH . D 4 HOH A 137 537 537 HOH HOH . D 4 HOH A 138 538 538 HOH HOH . D 4 HOH A 139 539 539 HOH HOH . D 4 HOH A 140 540 540 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAD . . . C 3 -11.753 -7.669 -13.502 1 20.16 ? PA NAD 302 A 1 HETATM 2 O O1A NAD . . . C 3 -11.871 -8.682 -12.418 1 20.34 ? O1A NAD 302 A 1 HETATM 3 O O2A NAD . . . C 3 -12.883 -7.993 -14.428 1 13.17 ? O2A NAD 302 A 1 HETATM 4 O O5B NAD . . . C 3 -10.354 -7.742 -14.236 1 21.69 ? O5B NAD 302 A 1 HETATM 5 C C5B NAD . . . C 3 -10.103 -6.85 -15.269 1 20.37 ? C5B NAD 302 A 1 HETATM 6 C C4B NAD . . . C 3 -8.738 -6.932 -15.812 1 18.53 ? C4B NAD 302 A 1 HETATM 7 O O4B NAD . . . C 3 -7.865 -6.663 -14.772 1 19.2 ? O4B NAD 302 A 1 HETATM 8 C C3B NAD . . . C 3 -8.422 -8.333 -16.14 1 21.5 ? C3B NAD 302 A 1 HETATM 9 O O3B NAD . . . C 3 -8.912 -8.712 -17.39 1 17.82 ? O3B NAD 302 A 1 HETATM 10 C C2B NAD . . . C 3 -7.029 -8.347 -16.052 1 17.66 ? C2B NAD 302 A 1 HETATM 11 O O2B NAD . . . C 3 -6.424 -7.855 -17.24 1 13.13 ? O2B NAD 302 A 1 HETATM 12 C C1B NAD . . . C 3 -6.731 -7.428 -14.944 1 21.63 ? C1B NAD 302 A 1 HETATM 13 N N9A NAD . . . C 3 -6.456 -8.233 -13.771 1 25.12 ? N9A NAD 302 A 1 HETATM 14 C C8A NAD . . . C 3 -7.327 -8.817 -12.917 1 22.9 ? C8A NAD 302 A 1 HETATM 15 N N7A NAD . . . C 3 -6.64 -9.514 -11.979 1 21.04 ? N7A NAD 302 A 1 HETATM 16 C C5A NAD . . . C 3 -5.3 -9.366 -12.259 1 23.57 ? C5A NAD 302 A 1 HETATM 17 C C6A NAD . . . C 3 -4.122 -9.862 -11.657 1 25.95 ? C6A NAD 302 A 1 HETATM 18 N N6A NAD . . . C 3 -4.229 -10.703 -10.481 1 25.35 ? N6A NAD 302 A 1 HETATM 19 N N1A NAD . . . C 3 -2.89 -9.538 -12.194 1 21.59 ? N1A NAD 302 A 1 HETATM 20 C C2A NAD . . . C 3 -2.806 -8.748 -13.303 1 21.39 ? C2A NAD 302 A 1 HETATM 21 N N3A NAD . . . C 3 -3.889 -8.265 -13.906 1 21.04 ? N3A NAD 302 A 1 HETATM 22 C C4A NAD . . . C 3 -5.174 -8.57 -13.394 1 22.65 ? C4A NAD 302 A 1 HETATM 23 O O3 NAD . . . C 3 -11.864 -6.216 -12.979 1 21.12 ? O3 NAD 302 A 1 HETATM 24 P PN NAD . . . C 3 -13.138 -5.55 -12.327 1 19.77 ? PN NAD 302 A 1 HETATM 25 O O1N NAD . . . C 3 -14.001 -6.574 -11.622 1 16.8 ? O1N NAD 302 A 1 HETATM 26 O O2N NAD . . . C 3 -14.116 -4.881 -13.274 1 15.32 ? O2N NAD 302 A 1 HETATM 27 O O5D NAD . . . C 3 -12.646 -4.534 -11.254 1 25.42 ? O5D NAD 302 A 1 HETATM 28 C C5D NAD . . . C 3 -12.151 -3.265 -11.53 1 22.44 ? C5D NAD 302 A 1 HETATM 29 C C4D NAD . . . C 3 -11.218 -2.798 -10.535 1 26.84 ? C4D NAD 302 A 1 HETATM 30 O O4D NAD . . . C 3 -10.853 -1.427 -10.819 1 32.38 ? O4D NAD 302 A 1 HETATM 31 C C3D NAD . . . C 3 -11.709 -2.843 -9.129 1 24.48 ? C3D NAD 302 A 1 HETATM 32 O O3D NAD . . . C 3 -10.701 -3.179 -8.282 1 31.57 ? O3D NAD 302 A 1 HETATM 33 C C2D NAD . . . C 3 -12.136 -1.457 -8.898 1 26.32 ? C2D NAD 302 A 1 HETATM 34 O O2D NAD . . . C 3 -12.03 -1.054 -7.605 1 19.91 ? O2D NAD 302 A 1 HETATM 35 C C1D NAD . . . C 3 -11.178 -0.649 -9.696 1 28.82 ? C1D NAD 302 A 1 HETATM 36 N N1N NAD . . . C 3 -11.578 0.831 -10.057 1 29.69 ? N1N NAD 302 A 1 HETATM 37 C C2N NAD . . . C 3 -10.885 1.846 -9.481 1 24.71 ? C2N NAD 302 A 1 HETATM 38 C C3N NAD . . . C 3 -11.224 3.199 -9.785 1 28.04 ? C3N NAD 302 A 1 HETATM 39 C C7N NAD . . . C 3 -10.425 4.322 -9.159 1 25.4 ? C7N NAD 302 A 1 HETATM 40 O O7N NAD . . . C 3 -10.643 5.485 -9.541 1 26.02 ? O7N NAD 302 A 1 HETATM 41 N N7N NAD . . . C 3 -9.431 4.101 -8.118 1 25.71 ? N7N NAD 302 A 1 HETATM 42 C C4N NAD . . . C 3 -12.263 3.435 -10.71 1 23.77 ? C4N NAD 302 A 1 HETATM 43 C C5N NAD . . . C 3 -12.981 2.346 -11.302 1 20.59 ? C5N NAD 302 A 1 HETATM 44 C C6N NAD . . . C 3 -12.59 1.026 -10.931 1 27.8 ? C6N NAD 302 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 288 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 44 #