data_3W2P # _model_server_result.job_id 4_SQlFQxs08GnGvnijZ4sg _model_server_result.datetime_utc '2024-11-16 10:41:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3w2p # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1101}' # _entry.id 3W2P # _exptl.entry_id 3W2P _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 560.998 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-{2-[4-({3-chloro-4-[3-(trifluoromethyl)phenoxy]phenyl}amino)-5H-pyrrolo[3,2-d]pyrimidin-5-yl]ethyl}-4-(dimethylamino)butanamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3W2P _cell.length_a 144.98 _cell.length_b 144.98 _cell.length_c 144.98 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3W2P _symmetry.cell_setting ? _symmetry.Int_Tables_number 197 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 106 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 797 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id C35 _struct_conn.ptnr2_label_comp_id W2P _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id W2P _struct_conn.ptnr2_auth_seq_id 1101 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.844 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C27 H28 Cl F3 N6 O2' _chem_comp.formula_weight 560.998 _chem_comp.id W2P _chem_comp.mon_nstd_flag . _chem_comp.name N-{2-[4-({3-chloro-4-[3-(trifluoromethyl)phenoxy]phenyl}amino)-5H-pyrrolo[3,2-d]pyrimidin-5-yl]ethyl}-4-(dimethylamino)butanamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag F17 C15 W2P sing 376 n n F16 C15 W2P sing 377 n n F18 C15 W2P sing 378 n n C15 C13 W2P sing 379 n n C39 N37 W2P sing 380 n n C13 C14 W2P doub 381 n y C13 C12 W2P sing 382 n y C29 C28 W2P sing 383 n n C29 N30 W2P sing 384 n n N37 C38 W2P sing 385 n n N37 C36 W2P sing 386 n n C14 C8 W2P sing 387 n y C28 N25 W2P sing 388 n n C36 C35 W2P sing 389 n n N30 C31 W2P sing 390 n n C12 C11 W2P doub 391 n y C8 O7 W2P sing 392 n n C8 C10 W2P doub 393 n y C31 O33 W2P doub 394 n n C31 C32 W2P sing 395 n n C6 C5 W2P doub 396 n y C6 C1 W2P sing 397 n y C5 C4 W2P sing 398 n y C35 C32 W2P sing 399 n n N25 C26 W2P sing 400 n y N25 C24 W2P sing 401 n y N34 C1 W2P sing 402 n n N34 C22 W2P sing 403 n n C1 C2 W2P doub 404 n y C4 O7 W2P sing 405 n n C4 C3 W2P doub 406 n y C2 C3 W2P sing 407 n y C3 CL9 W2P sing 408 n n C11 C10 W2P sing 409 n y C26 C27 W2P doub 410 n y C24 C22 W2P doub 411 n y C24 C23 W2P sing 412 n y C22 N21 W2P sing 413 n y C27 C23 W2P sing 414 n y C23 N19 W2P doub 415 n y N21 C20 W2P doub 416 n y N19 C20 W2P sing 417 n y C2 H1 W2P sing 418 n n C5 H2 W2P sing 419 n n C6 H3 W2P sing 420 n n C10 H4 W2P sing 421 n n C11 H5 W2P sing 422 n n C12 H6 W2P sing 423 n n C14 H7 W2P sing 424 n n C20 H8 W2P sing 425 n n C26 H9 W2P sing 426 n n C27 H10 W2P sing 427 n n C28 H11 W2P sing 428 n n C28 H12 W2P sing 429 n n C29 H13 W2P sing 430 n n C29 H14 W2P sing 431 n n N30 H15 W2P sing 432 n n C32 H16 W2P sing 433 n n C32 H17 W2P sing 434 n n N34 H18 W2P sing 435 n n C35 H19 W2P sing 436 n n C35 H20 W2P sing 437 n n C36 H21 W2P sing 438 n n C36 H22 W2P sing 439 n n C38 H24 W2P sing 440 n n C38 H25 W2P sing 441 n n C38 H26 W2P sing 442 n n C39 H27 W2P sing 443 n n C39 H28 W2P sing 444 n n C39 H29 W2P sing 445 n n # _atom_sites.entry_id 3W2P _atom_sites.fract_transf_matrix[1][1] 0.006898 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006898 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006898 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 W2P A 1 1101 1023 W2P LIG . C 3 HOH A 1 2001 2001 HOH HOH . C 3 HOH A 2 2002 2002 HOH HOH . C 3 HOH A 3 2003 2003 HOH HOH . C 3 HOH A 4 2004 2004 HOH HOH . C 3 HOH A 5 2005 2005 HOH HOH . C 3 HOH A 6 2006 2006 HOH HOH . C 3 HOH A 7 2007 2007 HOH HOH . C 3 HOH A 8 2008 2008 HOH HOH . C 3 HOH A 9 2009 2009 HOH HOH . C 3 HOH A 10 2010 2010 HOH HOH . C 3 HOH A 11 2011 2011 HOH HOH . C 3 HOH A 12 2012 2012 HOH HOH . C 3 HOH A 13 2013 2013 HOH HOH . C 3 HOH A 14 2014 2014 HOH HOH . C 3 HOH A 15 2015 2015 HOH HOH . C 3 HOH A 16 2016 2016 HOH HOH . C 3 HOH A 17 2017 2017 HOH HOH . C 3 HOH A 18 2018 2018 HOH HOH . C 3 HOH A 19 2019 2019 HOH HOH . C 3 HOH A 20 2020 2020 HOH HOH . C 3 HOH A 21 2021 2021 HOH HOH . C 3 HOH A 22 2022 2022 HOH HOH . C 3 HOH A 23 2023 2023 HOH HOH . C 3 HOH A 24 2024 2024 HOH HOH . C 3 HOH A 25 2025 2025 HOH HOH . C 3 HOH A 26 2026 2026 HOH HOH . C 3 HOH A 27 2027 2027 HOH HOH . C 3 HOH A 28 2028 2028 HOH HOH . C 3 HOH A 29 2029 2029 HOH HOH . C 3 HOH A 30 2030 2030 HOH HOH . C 3 HOH A 31 2031 2031 HOH HOH . C 3 HOH A 32 2032 2032 HOH HOH . C 3 HOH A 33 2033 2033 HOH HOH . C 3 HOH A 34 2034 2034 HOH HOH . C 3 HOH A 35 2035 2035 HOH HOH . C 3 HOH A 36 2036 2036 HOH HOH . C 3 HOH A 37 2037 2037 HOH HOH . C 3 HOH A 38 2038 2038 HOH HOH . C 3 HOH A 39 2039 2039 HOH HOH . C 3 HOH A 40 2040 2040 HOH HOH . C 3 HOH A 41 2041 2041 HOH HOH . C 3 HOH A 42 2042 2042 HOH HOH . C 3 HOH A 43 2043 2043 HOH HOH . C 3 HOH A 44 2044 2044 HOH HOH . C 3 HOH A 45 2045 2045 HOH HOH . C 3 HOH A 46 2046 2046 HOH HOH . C 3 HOH A 47 2047 2047 HOH HOH . C 3 HOH A 48 2048 2048 HOH HOH . C 3 HOH A 49 2049 2049 HOH HOH . C 3 HOH A 50 2050 2050 HOH HOH . C 3 HOH A 51 2051 2051 HOH HOH . C 3 HOH A 52 2052 2052 HOH HOH . C 3 HOH A 53 2053 2053 HOH HOH . C 3 HOH A 54 2054 2054 HOH HOH . C 3 HOH A 55 2055 2055 HOH HOH . C 3 HOH A 56 2056 2056 HOH HOH . C 3 HOH A 57 2057 2057 HOH HOH . C 3 HOH A 58 2058 2058 HOH HOH . C 3 HOH A 59 2059 2059 HOH HOH . C 3 HOH A 60 2060 2060 HOH HOH . C 3 HOH A 61 2061 2061 HOH HOH . C 3 HOH A 62 2062 2062 HOH HOH . C 3 HOH A 63 2063 2063 HOH HOH . C 3 HOH A 64 2064 2064 HOH HOH . C 3 HOH A 65 2065 2065 HOH HOH . C 3 HOH A 66 2066 2066 HOH HOH . C 3 HOH A 67 2067 2067 HOH HOH . C 3 HOH A 68 2068 2068 HOH HOH . C 3 HOH A 69 2069 2069 HOH HOH . C 3 HOH A 70 2070 2070 HOH HOH . C 3 HOH A 71 2071 2071 HOH HOH . C 3 HOH A 72 2072 2072 HOH HOH . C 3 HOH A 73 2073 2073 HOH HOH . C 3 HOH A 74 2074 2074 HOH HOH . C 3 HOH A 75 2075 2075 HOH HOH . C 3 HOH A 76 2076 2076 HOH HOH . C 3 HOH A 77 2077 2077 HOH HOH . C 3 HOH A 78 2078 2078 HOH HOH . C 3 HOH A 79 2079 2079 HOH HOH . C 3 HOH A 80 2080 2080 HOH HOH . C 3 HOH A 81 2081 2081 HOH HOH . C 3 HOH A 82 2082 2082 HOH HOH . C 3 HOH A 83 2083 2083 HOH HOH . C 3 HOH A 84 2084 2084 HOH HOH . C 3 HOH A 85 2085 2085 HOH HOH . C 3 HOH A 86 2086 2086 HOH HOH . C 3 HOH A 87 2087 2087 HOH HOH . C 3 HOH A 88 2088 2088 HOH HOH . C 3 HOH A 89 2089 2089 HOH HOH . C 3 HOH A 90 2090 2090 HOH HOH . C 3 HOH A 91 2091 2091 HOH HOH . C 3 HOH A 92 2092 2092 HOH HOH . C 3 HOH A 93 2093 2093 HOH HOH . C 3 HOH A 94 2094 2094 HOH HOH . C 3 HOH A 95 2095 2095 HOH HOH . C 3 HOH A 96 2096 2096 HOH HOH . C 3 HOH A 97 2097 2097 HOH HOH . C 3 HOH A 98 2098 2098 HOH HOH . C 3 HOH A 99 2099 2099 HOH HOH . C 3 HOH A 100 2100 2100 HOH HOH . C 3 HOH A 101 2101 2101 HOH HOH . C 3 HOH A 102 2102 2102 HOH HOH . C 3 HOH A 103 2103 2103 HOH HOH . C 3 HOH A 104 2104 2104 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 W2P . . . B 2 146.529 24.75 50.206 1 40.11 ? C1 W2P 1101 A 1 HETATM 2 C C2 W2P . . . B 2 147.79 25.283 50.375 1 37.92 ? C2 W2P 1101 A 1 HETATM 3 C C3 W2P . . . B 2 148.004 26.642 50.392 1 40.95 ? C3 W2P 1101 A 1 HETATM 4 C C4 W2P . . . B 2 146.942 27.494 50.215 1 42.52 ? C4 W2P 1101 A 1 HETATM 5 C C5 W2P . . . B 2 145.667 26.973 50.039 1 44.29 ? C5 W2P 1101 A 1 HETATM 6 C C6 W2P . . . B 2 145.453 25.596 50.033 1 40.24 ? C6 W2P 1101 A 1 HETATM 7 O O7 W2P . . . B 2 147.281 28.844 50.258 1 46.57 ? O7 W2P 1101 A 1 HETATM 8 C C8 W2P . . . B 2 146.357 29.814 49.89 1 47.45 ? C8 W2P 1101 A 1 HETATM 9 CL CL9 W2P . . . B 2 149.595 27.27 50.637 1 38.95 ? CL9 W2P 1101 A 1 HETATM 10 C C10 W2P . . . B 2 146.068 30.819 50.78 1 48.13 ? C10 W2P 1101 A 1 HETATM 11 C C11 W2P . . . B 2 145.17 31.804 50.436 1 52.32 ? C11 W2P 1101 A 1 HETATM 12 C C12 W2P . . . B 2 144.574 31.781 49.195 1 53.16 ? C12 W2P 1101 A 1 HETATM 13 C C13 W2P . . . B 2 144.873 30.773 48.3 1 56.86 ? C13 W2P 1101 A 1 HETATM 14 C C14 W2P . . . B 2 145.773 29.791 48.647 1 51.92 ? C14 W2P 1101 A 1 HETATM 15 C C15 W2P . . . B 2 144.24 30.736 46.943 1 63.25 ? C15 W2P 1101 A 1 HETATM 16 F F16 W2P . . . B 2 143.902 29.477 46.512 1 67.84 ? F16 W2P 1101 A 1 HETATM 17 F F17 W2P . . . B 2 145.085 31.222 45.992 1 60.94 ? F17 W2P 1101 A 1 HETATM 18 F F18 W2P . . . B 2 143.105 31.493 46.877 1 63.48 ? F18 W2P 1101 A 1 HETATM 19 N N19 W2P . . . B 2 147.761 20.981 53.479 1 40.18 ? N19 W2P 1101 A 1 HETATM 20 C C20 W2P . . . B 2 147.618 22.304 53.481 1 39.8 ? C20 W2P 1101 A 1 HETATM 21 N N21 W2P . . . B 2 147.23 23.094 52.479 1 41.44 ? N21 W2P 1101 A 1 HETATM 22 C C22 W2P . . . B 2 146.923 22.55 51.291 1 42.25 ? C22 W2P 1101 A 1 HETATM 23 C C23 W2P . . . B 2 147.452 20.426 52.293 1 43.81 ? C23 W2P 1101 A 1 HETATM 24 C C24 W2P . . . B 2 147.029 21.174 51.209 1 44.55 ? C24 W2P 1101 A 1 HETATM 25 N N25 W2P . . . B 2 146.825 20.278 50.185 1 49.73 ? N25 W2P 1101 A 1 HETATM 26 C C26 W2P . . . B 2 147.087 18.996 50.602 1 49.64 ? C26 W2P 1101 A 1 HETATM 27 C C27 W2P . . . B 2 147.478 19.053 51.921 1 46.32 ? C27 W2P 1101 A 1 HETATM 28 C C28 W2P . . . B 2 146.409 20.623 48.821 1 49.49 ? C28 W2P 1101 A 1 HETATM 29 C C29 W2P . . . B 2 145.217 19.855 48.306 1 51.75 ? C29 W2P 1101 A 1 HETATM 30 N N30 W2P . . . B 2 144.087 20.348 49.024 1 51.42 ? N30 W2P 1101 A 1 HETATM 31 C C31 W2P . . . B 2 143.455 19.526 49.911 1 58.3 ? C31 W2P 1101 A 1 HETATM 32 C C32 W2P . . . B 2 142.315 20.254 50.547 1 57.01 ? C32 W2P 1101 A 1 HETATM 33 O O33 W2P . . . B 2 143.745 18.354 50.145 1 58.44 ? O33 W2P 1101 A 1 HETATM 34 N N34 W2P . . . B 2 146.519 23.339 50.201 1 40.51 ? N34 W2P 1101 A 1 HETATM 35 C C35 W2P . . . B 2 141.047 19.58 50.064 1 61.49 ? C35 W2P 1101 A 1 HETATM 36 C C36 W2P . . . B 2 140.43 20.294 48.881 1 70.06 ? C36 W2P 1101 A 1 HETATM 37 N N37 W2P . . . B 2 139.155 19.657 48.567 1 75.32 ? N37 W2P 1101 A 1 HETATM 38 C C38 W2P . . . B 2 138.075 20.594 48.88 1 73.08 ? C38 W2P 1101 A 1 HETATM 39 C C39 W2P . . . B 2 139.145 19.421 47.129 1 76.14 ? C39 W2P 1101 A 1 # _model_server_stats.io_time_ms 51 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 325 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 39 #