data_3W2Q # _model_server_result.job_id 0bCsE8HIyswZG7UH8yyNtw _model_server_result.datetime_utc '2024-11-16 08:48:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3w2q # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1101}' # _entry.id 3W2Q # _exptl.entry_id 3W2Q _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 559.059 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-(4-{[3-chloro-4-(pyridin-2-ylmethoxy)phenyl]amino}-3-cyano-7-ethoxyquinolin-6-yl)-4-(dimethylamino)butanamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3W2Q _cell.length_a 144.113 _cell.length_b 144.113 _cell.length_c 144.113 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3W2Q _symmetry.cell_setting ? _symmetry.Int_Tables_number 197 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 106 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 797 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id CBT _struct_conn.ptnr2_label_comp_id HKI _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id HKI _struct_conn.ptnr2_auth_seq_id 1101 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.864 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C30 H31 Cl N6 O3' _chem_comp.formula_weight 559.059 _chem_comp.id HKI _chem_comp.mon_nstd_flag . _chem_comp.name N-(4-{[3-chloro-4-(pyridin-2-ylmethoxy)phenyl]amino}-3-cyano-7-ethoxyquinolin-6-yl)-4-(dimethylamino)butanamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'Neratinib (HKI-272), bound form' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAC NBU HKI sing 150 n n NBU CAY HKI sing 151 n n NBU CAB HKI sing 152 n n CAY CBT HKI sing 153 n n CAX CBT HKI sing 154 n n CAX CBH HKI sing 155 n n CAM NAZ HKI doub 156 n y CAM CAK HKI sing 157 n y NAZ CBK HKI sing 158 n y NBB CBH HKI sing 159 n n NBB CBM HKI sing 160 n n CBH OAG HKI doub 161 n n OBE CBN HKI sing 162 n n OBE CAV HKI sing 163 n n CAK CAL HKI doub 164 n y CLA CBJ HKI sing 165 n n CBN CBJ HKI doub 166 n y CBN CAP HKI sing 167 n y CBJ CAR HKI sing 168 n y CAP CAO HKI doub 169 n y CBM CAS HKI doub 170 n y CBM CBO HKI sing 171 n y CAR CBI HKI doub 172 n y CBK CAV HKI sing 173 n n CBK CAN HKI doub 174 n y CAO CBI HKI sing 175 n y CAS CBR HKI sing 176 n y CBI NBC HKI sing 177 n n OBD CBO HKI sing 178 n n OBD CAU HKI sing 179 n n CAL CAN HKI sing 180 n y NBC CBP HKI sing 181 n n CBO CAT HKI doub 182 n y CAA CAU HKI sing 183 n n CBR CBP HKI doub 184 n y CBR CBQ HKI sing 185 n y CBP CBL HKI sing 186 n y CAT CBQ HKI sing 187 n y CBQ NBA HKI doub 188 n y CBL CAJ HKI sing 189 n n CBL CAQ HKI doub 190 n y CAJ NAD HKI trip 191 n n NBA CAQ HKI sing 192 n y CAL H1 HKI sing 193 n n CAK H2 HKI sing 194 n n CAO H3 HKI sing 195 n n CAP H4 HKI sing 196 n n CAN H5 HKI sing 197 n n CAS H6 HKI sing 198 n n CAT H7 HKI sing 199 n n CAR H8 HKI sing 200 n n CAM H9 HKI sing 201 n n CAQ H10 HKI sing 202 n n CAA H11 HKI sing 203 n n CAA H12 HKI sing 204 n n CAA H13 HKI sing 205 n n CAB H14 HKI sing 206 n n CAB H15 HKI sing 207 n n CAB H16 HKI sing 208 n n CAC H17 HKI sing 209 n n CAC H18 HKI sing 210 n n CAC H19 HKI sing 211 n n CAV H20 HKI sing 212 n n CAV H21 HKI sing 213 n n CAX H22 HKI sing 214 n n CAX H23 HKI sing 215 n n CBT H24 HKI sing 216 n n CBT H25 HKI sing 217 n n CAY H26 HKI sing 218 n n CAY H27 HKI sing 219 n n CAU H28 HKI sing 220 n n CAU H29 HKI sing 221 n n NBC H30 HKI sing 222 n n NBB H31 HKI sing 223 n n # _atom_sites.entry_id 3W2Q _atom_sites.fract_transf_matrix[1][1] 0.006939 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006939 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006939 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HKI A 1 1101 1023 HKI CY7 . C 3 MES A 1 1102 1024 MES MES . D 4 HOH A 1 2001 2001 HOH HOH . D 4 HOH A 2 2002 2002 HOH HOH . D 4 HOH A 3 2003 2003 HOH HOH . D 4 HOH A 4 2004 2004 HOH HOH . D 4 HOH A 5 2005 2005 HOH HOH . D 4 HOH A 6 2006 2006 HOH HOH . D 4 HOH A 7 2007 2007 HOH HOH . D 4 HOH A 8 2008 2008 HOH HOH . D 4 HOH A 9 2009 2009 HOH HOH . D 4 HOH A 10 2010 2010 HOH HOH . D 4 HOH A 11 2011 2011 HOH HOH . D 4 HOH A 12 2012 2012 HOH HOH . D 4 HOH A 13 2013 2013 HOH HOH . D 4 HOH A 14 2014 2014 HOH HOH . D 4 HOH A 15 2015 2015 HOH HOH . D 4 HOH A 16 2016 2016 HOH HOH . D 4 HOH A 17 2017 2017 HOH HOH . D 4 HOH A 18 2018 2018 HOH HOH . D 4 HOH A 19 2019 2019 HOH HOH . D 4 HOH A 20 2020 2020 HOH HOH . D 4 HOH A 21 2021 2021 HOH HOH . D 4 HOH A 22 2022 2022 HOH HOH . D 4 HOH A 23 2023 2023 HOH HOH . D 4 HOH A 24 2024 2024 HOH HOH . D 4 HOH A 25 2025 2025 HOH HOH . D 4 HOH A 26 2026 2026 HOH HOH . D 4 HOH A 27 2027 2027 HOH HOH . D 4 HOH A 28 2028 2028 HOH HOH . D 4 HOH A 29 2029 2029 HOH HOH . D 4 HOH A 30 2030 2030 HOH HOH . D 4 HOH A 31 2031 2031 HOH HOH . D 4 HOH A 32 2032 2032 HOH HOH . D 4 HOH A 33 2033 2033 HOH HOH . D 4 HOH A 34 2034 2034 HOH HOH . D 4 HOH A 35 2035 2035 HOH HOH . D 4 HOH A 36 2036 2036 HOH HOH . D 4 HOH A 37 2037 2037 HOH HOH . D 4 HOH A 38 2038 2038 HOH HOH . D 4 HOH A 39 2039 2039 HOH HOH . D 4 HOH A 40 2040 2040 HOH HOH . D 4 HOH A 41 2041 2041 HOH HOH . D 4 HOH A 42 2042 2042 HOH HOH . D 4 HOH A 43 2043 2043 HOH HOH . D 4 HOH A 44 2044 2044 HOH HOH . D 4 HOH A 45 2045 2045 HOH HOH . D 4 HOH A 46 2046 2046 HOH HOH . D 4 HOH A 47 2047 2047 HOH HOH . D 4 HOH A 48 2048 2048 HOH HOH . D 4 HOH A 49 2049 2049 HOH HOH . D 4 HOH A 50 2050 2050 HOH HOH . D 4 HOH A 51 2051 2051 HOH HOH . D 4 HOH A 52 2052 2052 HOH HOH . D 4 HOH A 53 2053 2053 HOH HOH . D 4 HOH A 54 2054 2054 HOH HOH . D 4 HOH A 55 2055 2055 HOH HOH . D 4 HOH A 56 2056 2056 HOH HOH . D 4 HOH A 57 2057 2057 HOH HOH . D 4 HOH A 58 2058 2058 HOH HOH . D 4 HOH A 59 2059 2059 HOH HOH . D 4 HOH A 60 2060 2060 HOH HOH . D 4 HOH A 61 2061 2061 HOH HOH . D 4 HOH A 62 2062 2062 HOH HOH . D 4 HOH A 63 2063 2063 HOH HOH . D 4 HOH A 64 2064 2064 HOH HOH . D 4 HOH A 65 2065 2065 HOH HOH . D 4 HOH A 66 2066 2066 HOH HOH . D 4 HOH A 67 2067 2067 HOH HOH . D 4 HOH A 68 2068 2068 HOH HOH . D 4 HOH A 69 2069 2069 HOH HOH . D 4 HOH A 70 2070 2070 HOH HOH . D 4 HOH A 71 2071 2071 HOH HOH . D 4 HOH A 72 2072 2072 HOH HOH . D 4 HOH A 73 2073 2073 HOH HOH . D 4 HOH A 74 2074 2074 HOH HOH . D 4 HOH A 75 2075 2075 HOH HOH . D 4 HOH A 76 2076 2076 HOH HOH . D 4 HOH A 77 2077 2077 HOH HOH . D 4 HOH A 78 2078 2078 HOH HOH . D 4 HOH A 79 2079 2079 HOH HOH . D 4 HOH A 80 2080 2080 HOH HOH . D 4 HOH A 81 2081 2081 HOH HOH . D 4 HOH A 82 2082 2082 HOH HOH . D 4 HOH A 83 2083 2083 HOH HOH . D 4 HOH A 84 2084 2084 HOH HOH . D 4 HOH A 85 2085 2085 HOH HOH . D 4 HOH A 86 2086 2086 HOH HOH . D 4 HOH A 87 2087 2087 HOH HOH . D 4 HOH A 88 2088 2088 HOH HOH . D 4 HOH A 89 2089 2089 HOH HOH . D 4 HOH A 90 2090 2090 HOH HOH . D 4 HOH A 91 2091 2091 HOH HOH . D 4 HOH A 92 2092 2092 HOH HOH . D 4 HOH A 93 2093 2093 HOH HOH . D 4 HOH A 94 2094 2094 HOH HOH . D 4 HOH A 95 2095 2095 HOH HOH . D 4 HOH A 96 2096 2096 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAJ HKI . . . B 2 1.654 24.013 52.956 1 40.81 ? CAJ HKI 1101 A 1 HETATM 2 C CAL HKI . . . B 2 1.438 32.804 50.984 1 47.62 ? CAL HKI 1101 A 1 HETATM 3 C CAK HKI . . . B 2 0.712 33.151 49.868 1 48.35 ? CAK HKI 1101 A 1 HETATM 4 C CAO HKI . . . B 2 -0.692 25.377 50.586 1 53.11 ? CAO HKI 1101 A 1 HETATM 5 C CAP HKI . . . B 2 -0.322 26.674 50.279 1 56.27 ? CAP HKI 1101 A 1 HETATM 6 C CAN HKI . . . B 2 1.518 31.47 51.317 1 49.83 ? CAN HKI 1101 A 1 HETATM 7 C CAS HKI . . . B 2 -0.243 20.239 50.608 1 43.53 ? CAS HKI 1101 A 1 HETATM 8 C CAT HKI . . . B 2 1.486 18.601 51.967 1 41.64 ? CAT HKI 1101 A 1 HETATM 9 C CAR HKI . . . B 2 1.586 24.734 50.46 1 51.66 ? CAR HKI 1101 A 1 HETATM 10 C CAM HKI . . . B 2 0.101 32.158 49.137 1 48.65 ? CAM HKI 1101 A 1 HETATM 11 C CAQ HKI . . . B 2 2.414 21.749 53.291 1 40.26 ? CAQ HKI 1101 A 1 HETATM 12 C CBL HKI . . . B 2 1.591 22.631 52.634 1 40.67 ? CBL HKI 1101 A 1 HETATM 13 C CBR HKI . . . B 2 0.661 20.79 51.497 1 43.59 ? CBR HKI 1101 A 1 HETATM 14 C CBQ HKI . . . B 2 1.536 19.963 52.199 1 41.99 ? CBQ HKI 1101 A 1 HETATM 15 C CBI HKI . . . B 2 0.256 24.378 50.677 1 50.1 ? CBI HKI 1101 A 1 HETATM 16 C CBM HKI . . . B 2 -0.289 18.874 50.388 1 45.36 ? CBM HKI 1101 A 1 HETATM 17 C CBP HKI . . . B 2 0.679 22.164 51.71 1 42.46 ? CBP HKI 1101 A 1 HETATM 18 C CBN HKI . . . B 2 1.009 26.999 50.081 1 55.89 ? CBN HKI 1101 A 1 HETATM 19 C CBO HKI . . . B 2 0.589 18.055 51.071 1 43.48 ? CBO HKI 1101 A 1 HETATM 20 C CBJ HKI . . . B 2 1.985 26.032 50.174 1 54.19 ? CBJ HKI 1101 A 1 HETATM 21 C CBK HKI . . . B 2 0.874 30.542 50.526 1 50.73 ? CBK HKI 1101 A 1 HETATM 22 C CBH HKI . . . B 2 -2.591 18.634 49.703 1 46.04 ? CBH HKI 1101 A 1 HETATM 23 C CAA HKI . . . B 2 1.402 14.519 51.149 1 43.65 ? CAA HKI 1101 A 1 HETATM 24 C CAB HKI . . . B 2 -7.831 18.607 48.749 1 49.61 ? CAB HKI 1101 A 1 HETATM 25 C CAC HKI . . . B 2 -7.717 17.604 46.668 1 50.81 ? CAC HKI 1101 A 1 HETATM 26 C CAV HKI . . . B 2 0.962 29.094 50.896 1 53.34 ? CAV HKI 1101 A 1 HETATM 27 C CAX HKI . . . B 2 -3.554 17.67 49.067 1 45.68 ? CAX HKI 1101 A 1 HETATM 28 C CBT HKI . . . B 2 -5.011 18.123 49.196 1 45.06 ? CBT HKI 1101 A 1 HETATM 29 C CAY HKI . . . B 2 -5.726 17.713 47.913 1 48.41 ? CAY HKI 1101 A 1 HETATM 30 C CAU HKI . . . B 2 1.69 16.001 51.281 1 42.12 ? CAU HKI 1101 A 1 HETATM 31 N NAD HKI . . . B 2 1.622 25.129 53.3 1 41.59 ? NAD HKI 1101 A 1 HETATM 32 N NBA HKI . . . B 2 2.416 20.432 53.093 1 40.15 ? NBA HKI 1101 A 1 HETATM 33 N NAZ HKI . . . B 2 0.164 30.856 49.437 1 50.48 ? NAZ HKI 1101 A 1 HETATM 34 N NBC HKI . . . B 2 -0.176 23.061 51.022 1 45.23 ? NBC HKI 1101 A 1 HETATM 35 N NBB HKI . . . B 2 -1.237 18.341 49.477 1 46.84 ? NBB HKI 1101 A 1 HETATM 36 N NBU HKI . . . B 2 -6.959 18.439 47.595 1 51.25 ? NBU HKI 1101 A 1 HETATM 37 O OAG HKI . . . B 2 -3.018 19.579 50.358 1 45.12 ? OAG HKI 1101 A 1 HETATM 38 O OBE HKI . . . B 2 1.397 28.299 49.78 1 56.58 ? OBE HKI 1101 A 1 HETATM 39 O OBD HKI . . . B 2 0.523 16.689 50.833 1 43.08 ? OBD HKI 1101 A 1 HETATM 40 CL CLA HKI . . . B 2 3.657 26.498 49.921 1 53.09 ? CLA HKI 1101 A 1 # _model_server_stats.io_time_ms 77 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 305 _model_server_stats.encode_time_ms 17 _model_server_stats.element_count 40 #