data_3W3A # _model_server_result.job_id -6LKCNhlyOf7F8lSLnor_Q _model_server_result.datetime_utc '2025-07-13 09:36:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3w3a # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"Q","auth_seq_id":600}' # _entry.id 3W3A # _exptl.entry_id 3W3A _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 427.201 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-DIPHOSPHATE" _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3W3A _cell.length_a 382.144 _cell.length_b 382.144 _cell.length_c 148.248 _cell.Z_PDB 36 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3W3A _symmetry.cell_setting ? _symmetry.Int_Tables_number 150 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 3 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? octameric 8 author_defined_assembly 1 ? octameric 8 author_defined_assembly 2 PISA hexameric 6 software_defined_assembly 3 PISA dimeric 2 software_defined_assembly 4 PISA hexameric 6 software_defined_assembly 5 PISA dimeric 2 software_defined_assembly 6 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,Q,R 1 1 I,J,K,L,M,N,O,P,S,T 2 1 A,B,C,D,E,F,Q,R 3 1 G,H 4 1 I,J,K,L,M,N,S,T 5 1 O,P 6 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 Q N N ? 5 R N N ? 5 S N N ? 5 T N N # _chem_comp.formula 'C10 H15 N5 O10 P2' _chem_comp.formula_weight 427.201 _chem_comp.id ADP _chem_comp.mon_nstd_flag n _chem_comp.name "ADENOSINE-5'-DIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PB O1B ADP doub 1 n n PB O2B ADP sing 2 n n PB O3B ADP sing 3 n n PB O3A ADP sing 4 n n O2B HOB2 ADP sing 5 n n O3B HOB3 ADP sing 6 n n PA O1A ADP doub 7 n n PA O2A ADP sing 8 n n PA O3A ADP sing 9 n n PA O5' ADP sing 10 n n O2A HOA2 ADP sing 11 n n O5' C5' ADP sing 12 n n C5' C4' ADP sing 13 n n C5' "H5'1" ADP sing 14 n n C5' "H5'2" ADP sing 15 n n C4' O4' ADP sing 16 n n C4' C3' ADP sing 17 n n C4' H4' ADP sing 18 n n O4' C1' ADP sing 19 n n C3' O3' ADP sing 20 n n C3' C2' ADP sing 21 n n C3' H3' ADP sing 22 n n O3' HO3' ADP sing 23 n n C2' O2' ADP sing 24 n n C2' C1' ADP sing 25 n n C2' H2' ADP sing 26 n n O2' HO2' ADP sing 27 n n C1' N9 ADP sing 28 n n C1' H1' ADP sing 29 n n N9 C8 ADP sing 30 n y N9 C4 ADP sing 31 n y C8 N7 ADP doub 32 n y C8 H8 ADP sing 33 n n N7 C5 ADP sing 34 n y C5 C6 ADP sing 35 n y C5 C4 ADP doub 36 n y C6 N6 ADP sing 37 n n C6 N1 ADP doub 38 n y N6 HN61 ADP sing 39 n n N6 HN62 ADP sing 40 n n N1 C2 ADP sing 41 n y C2 N3 ADP doub 42 n y C2 H2 ADP sing 43 n n N3 C4 ADP sing 44 n y # _atom_sites.entry_id 3W3A _atom_sites.fract_transf_matrix[1][1] 0.002617 _atom_sites.fract_transf_matrix[1][2] 0.001511 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.003022 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006745 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code Q 5 ADP A 1 600 600 ADP ADP . R 5 ADP C 1 600 600 ADP ADP . S 5 ADP I 1 600 600 ADP ADP . T 5 ADP K 1 600 600 ADP ADP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PB ADP . . . Q 5 100.193 65.266 45.583 1 256.86 ? PB ADP 600 A 1 HETATM 2 O O1B ADP . . . Q 5 100.042 64.774 46.968 1 10.51 ? O1B ADP 600 A 1 HETATM 3 O O2B ADP . . . Q 5 99.005 65.272 44.69 1 35.31 ? O2B ADP 600 A 1 HETATM 4 O O3B ADP . . . Q 5 100.745 66.639 45.624 1 178.32 ? O3B ADP 600 A 1 HETATM 5 P PA ADP . . . Q 5 102.08 63.19 45.531 1 329.24 ? PA ADP 600 A 1 HETATM 6 O O1A ADP . . . Q 5 102.283 62.118 44.538 1 10.51 ? O1A ADP 600 A 1 HETATM 7 O O2A ADP . . . Q 5 101.458 62.936 46.853 1 284.63 ? O2A ADP 600 A 1 HETATM 8 O O3A ADP . . . Q 5 101.398 64.484 44.856 1 308.24 ? O3A ADP 600 A 1 HETATM 9 O O5' ADP . . . Q 5 103.518 63.799 45.937 1 37.05 ? O5' ADP 600 A 1 HETATM 10 C C5' ADP . . . Q 5 104.736 63.548 45.227 1 246.6 ? C5' ADP 600 A 1 HETATM 11 C C4' ADP . . . Q 5 105.756 62.738 46.039 1 404.75 ? C4' ADP 600 A 1 HETATM 12 O O4' ADP . . . Q 5 105.986 63.11 47.406 1 461.66 ? O4' ADP 600 A 1 HETATM 13 C C3' ADP . . . Q 5 105.444 61.258 46.158 1 493.55 ? C3' ADP 600 A 1 HETATM 14 O O3' ADP . . . Q 5 105.783 60.753 44.862 1 668.27 ? O3' ADP 600 A 1 HETATM 15 C C2' ADP . . . Q 5 106.429 60.779 47.216 1 22.51 ? C2' ADP 600 A 1 HETATM 16 O O2' ADP . . . Q 5 107.675 60.289 46.7 1 239.85 ? O2' ADP 600 A 1 HETATM 17 C C1' ADP . . . Q 5 106.659 62.02 48.064 1 355.87 ? C1' ADP 600 A 1 HETATM 18 N N9 ADP . . . Q 5 106.231 61.907 49.476 1 398.55 ? N9 ADP 600 A 1 HETATM 19 C C8 ADP . . . Q 5 105.058 61.555 49.993 1 462.13 ? C8 ADP 600 A 1 HETATM 20 N N7 ADP . . . Q 5 105.115 61.571 51.319 1 489.04 ? N7 ADP 600 A 1 HETATM 21 C C5 ADP . . . Q 5 106.357 61.938 51.671 1 452.17 ? C5 ADP 600 A 1 HETATM 22 C C6 ADP . . . Q 5 107.002 62.128 52.813 1 404.41 ? C6 ADP 600 A 1 HETATM 23 N N6 ADP . . . Q 5 106.354 61.892 53.947 1 260.89 ? N6 ADP 600 A 1 HETATM 24 N N1 ADP . . . Q 5 108.298 62.513 52.857 1 332.98 ? N1 ADP 600 A 1 HETATM 25 C C2 ADP . . . Q 5 108.982 62.709 51.661 1 48.09 ? C2 ADP 600 A 1 HETATM 26 N N3 ADP . . . Q 5 108.304 62.505 50.453 1 416.65 ? N3 ADP 600 A 1 HETATM 27 C C4 ADP . . . Q 5 107.02 62.133 50.53 1 391.04 ? C4 ADP 600 A 1 # _model_server_stats.io_time_ms 108 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 74 _model_server_stats.query_time_ms 333 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 27 #