data_3W4I # _model_server_result.job_id ZkhVdvK7rj14Z-zvRV-9ew _model_server_result.datetime_utc '2024-11-13 16:19:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3w4i # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":401}' # _entry.id 3W4I # _exptl.entry_id 3W4I _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 785.55 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN-ADENINE DINUCLEOTIDE' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3W4I _cell.length_a 148.696 _cell.length_b 181.529 _cell.length_c 50.612 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3W4I _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 PISA tetrameric 4 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,G,H 1 1 C,D,I,J,K,L 2 1 A,B,C,D,E,F,G,H,I,J,K,L 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 G N N ? 2 I N N ? 2 K N N # _chem_comp.formula 'C27 H33 N9 O15 P2' _chem_comp.formula_weight 785.55 _chem_comp.id FAD _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN-ADENINE DINUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A FAD doub 96 n n PA O2A FAD sing 97 n n PA O5B FAD sing 98 n n PA O3P FAD sing 99 n n O2A HOA2 FAD sing 100 n n O5B C5B FAD sing 101 n n C5B C4B FAD sing 102 n n C5B H51A FAD sing 103 n n C5B H52A FAD sing 104 n n C4B O4B FAD sing 105 n n C4B C3B FAD sing 106 n n C4B H4B FAD sing 107 n n O4B C1B FAD sing 108 n n C3B O3B FAD sing 109 n n C3B C2B FAD sing 110 n n C3B H3B FAD sing 111 n n O3B HO3A FAD sing 112 n n C2B O2B FAD sing 113 n n C2B C1B FAD sing 114 n n C2B H2B FAD sing 115 n n O2B HO2A FAD sing 116 n n C1B N9A FAD sing 117 n n C1B H1B FAD sing 118 n n N9A C8A FAD sing 119 n y N9A C4A FAD sing 120 n y C8A N7A FAD doub 121 n y C8A H8A FAD sing 122 n n N7A C5A FAD sing 123 n y C5A C6A FAD sing 124 n y C5A C4A FAD doub 125 n y C6A N6A FAD sing 126 n n C6A N1A FAD doub 127 n y N6A H61A FAD sing 128 n n N6A H62A FAD sing 129 n n N1A C2A FAD sing 130 n y C2A N3A FAD doub 131 n y C2A H2A FAD sing 132 n n N3A C4A FAD sing 133 n y N1 C2 FAD sing 134 n n N1 C10 FAD doub 135 n n C2 O2 FAD doub 136 n n C2 N3 FAD sing 137 n n N3 C4 FAD sing 138 n n N3 HN3 FAD sing 139 n n C4 O4 FAD doub 140 n n C4 C4X FAD sing 141 n n C4X N5 FAD doub 142 n n C4X C10 FAD sing 143 n n N5 C5X FAD sing 144 n n C5X C6 FAD doub 145 n y C5X C9A FAD sing 146 n y C6 C7 FAD sing 147 n y C6 H6 FAD sing 148 n n C7 C7M FAD sing 149 n n C7 C8 FAD doub 150 n y C7M HM71 FAD sing 151 n n C7M HM72 FAD sing 152 n n C7M HM73 FAD sing 153 n n C8 C8M FAD sing 154 n n C8 C9 FAD sing 155 n y C8M HM81 FAD sing 156 n n C8M HM82 FAD sing 157 n n C8M HM83 FAD sing 158 n n C9 C9A FAD doub 159 n y C9 H9 FAD sing 160 n n C9A N10 FAD sing 161 n n N10 C10 FAD sing 162 n n N10 C1' FAD sing 163 n n C1' C2' FAD sing 164 n n C1' "H1'1" FAD sing 165 n n C1' "H1'2" FAD sing 166 n n C2' O2' FAD sing 167 n n C2' C3' FAD sing 168 n n C2' H2' FAD sing 169 n n O2' HO2' FAD sing 170 n n C3' O3' FAD sing 171 n n C3' C4' FAD sing 172 n n C3' H3' FAD sing 173 n n O3' HO3' FAD sing 174 n n C4' O4' FAD sing 175 n n C4' C5' FAD sing 176 n n C4' H4' FAD sing 177 n n O4' HO4' FAD sing 178 n n C5' O5' FAD sing 179 n n C5' "H5'1" FAD sing 180 n n C5' "H5'2" FAD sing 181 n n O5' P FAD sing 182 n n P O1P FAD doub 183 n n P O2P FAD sing 184 n n P O3P FAD sing 185 n n O2P HOP2 FAD sing 186 n n # _atom_sites.entry_id 3W4I _atom_sites.fract_transf_matrix[1][1] 0.006725 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005509 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019758 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 FAD A 1 401 401 FAD FAD . F 3 8LG A 1 402 402 8LG 8LG . G 2 FAD B 1 401 401 FAD FAD . H 3 8LG B 1 402 402 8LG 8LG . I 2 FAD C 1 401 401 FAD FAD . J 3 8LG C 1 402 402 8LG 8LG . K 2 FAD D 1 401 401 FAD FAD . L 3 8LG D 1 402 402 8LG 8LG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA FAD . . . I 2 16.282 14.1 16.491 1 42.91 ? PA FAD 401 C 1 HETATM 2 O O1A FAD . . . I 2 16.221 15.583 16.659 1 43.62 ? O1A FAD 401 C 1 HETATM 3 O O2A FAD . . . I 2 16.84 13.539 15.201 1 44.25 ? O2A FAD 401 C 1 HETATM 4 O O5B FAD . . . I 2 17.147 13.431 17.671 1 40.77 ? O5B FAD 401 C 1 HETATM 5 C C5B FAD . . . I 2 17.367 12.037 17.565 1 40.97 ? C5B FAD 401 C 1 HETATM 6 C C4B FAD . . . I 2 18.448 11.647 18.546 1 42.99 ? C4B FAD 401 C 1 HETATM 7 O O4B FAD . . . I 2 18.47 10.222 18.703 1 45.2 ? O4B FAD 401 C 1 HETATM 8 C C3B FAD . . . I 2 19.824 12.028 18.036 1 43.91 ? C3B FAD 401 C 1 HETATM 9 O O3B FAD . . . I 2 20.568 12.373 19.203 1 42.25 ? O3B FAD 401 C 1 HETATM 10 C C2B FAD . . . I 2 20.406 10.75 17.474 1 44.08 ? C2B FAD 401 C 1 HETATM 11 O O2B FAD . . . I 2 21.829 10.792 17.592 1 43.65 ? O2B FAD 401 C 1 HETATM 12 C C1B FAD . . . I 2 19.814 9.764 18.461 1 45.85 ? C1B FAD 401 C 1 HETATM 13 N N9A FAD . . . I 2 19.82 8.351 18.087 1 47.09 ? N9A FAD 401 C 1 HETATM 14 C C8A FAD . . . I 2 19.056 7.686 17.161 1 47 ? C8A FAD 401 C 1 HETATM 15 N N7A FAD . . . I 2 19.339 6.395 17.129 1 45.97 ? N7A FAD 401 C 1 HETATM 16 C C5A FAD . . . I 2 20.327 6.214 18.08 1 46.71 ? C5A FAD 401 C 1 HETATM 17 C C6A FAD . . . I 2 21.033 5.096 18.523 1 46.86 ? C6A FAD 401 C 1 HETATM 18 N N6A FAD . . . I 2 20.836 3.815 18.015 1 46.33 ? N6A FAD 401 C 1 HETATM 19 N N1A FAD . . . I 2 21.947 5.256 19.486 1 47.14 ? N1A FAD 401 C 1 HETATM 20 C C2A FAD . . . I 2 22.122 6.484 19.97 1 47.56 ? C2A FAD 401 C 1 HETATM 21 N N3A FAD . . . I 2 21.515 7.63 19.634 1 47.99 ? N3A FAD 401 C 1 HETATM 22 C C4A FAD . . . I 2 20.622 7.417 18.676 1 47.3 ? C4A FAD 401 C 1 HETATM 23 N N1 FAD . . . I 2 9.227 20.968 13.524 1 36.55 ? N1 FAD 401 C 1 HETATM 24 C C2 FAD . . . I 2 8.525 21.992 14.106 1 36.63 ? C2 FAD 401 C 1 HETATM 25 O O2 FAD . . . I 2 7.843 21.828 15.115 1 37.25 ? O2 FAD 401 C 1 HETATM 26 N N3 FAD . . . I 2 8.644 23.203 13.479 1 36.19 ? N3 FAD 401 C 1 HETATM 27 C C4 FAD . . . I 2 9.387 23.476 12.38 1 35.83 ? C4 FAD 401 C 1 HETATM 28 O O4 FAD . . . I 2 9.438 24.614 11.929 1 36.74 ? O4 FAD 401 C 1 HETATM 29 C C4X FAD . . . I 2 10.11 22.336 11.796 1 35.77 ? C4X FAD 401 C 1 HETATM 30 N N5 FAD . . . I 2 10.846 22.531 10.702 1 36.28 ? N5 FAD 401 C 1 HETATM 31 C C5X FAD . . . I 2 11.482 21.459 10.217 1 36.22 ? C5X FAD 401 C 1 HETATM 32 C C6 FAD . . . I 2 12.258 21.592 9.084 1 36.37 ? C6 FAD 401 C 1 HETATM 33 C C7 FAD . . . I 2 12.937 20.528 8.535 1 36.51 ? C7 FAD 401 C 1 HETATM 34 C C7M FAD . . . I 2 13.773 20.718 7.307 1 36.18 ? C7M FAD 401 C 1 HETATM 35 C C8 FAD . . . I 2 12.832 19.298 9.134 1 36.62 ? C8 FAD 401 C 1 HETATM 36 C C8M FAD . . . I 2 13.558 18.124 8.573 1 36.74 ? C8M FAD 401 C 1 HETATM 37 C C9 FAD . . . I 2 12.05 19.142 10.262 1 36.76 ? C9 FAD 401 C 1 HETATM 38 C C9A FAD . . . I 2 11.381 20.213 10.81 1 36.22 ? C9A FAD 401 C 1 HETATM 39 N N10 FAD . . . I 2 10.633 20.077 11.906 1 36.65 ? N10 FAD 401 C 1 HETATM 40 C C10 FAD . . . I 2 9.992 21.119 12.4 1 36.09 ? C10 FAD 401 C 1 HETATM 41 C C1' FAD . . . I 2 10.429 18.809 12.639 1 37.19 ? C1' FAD 401 C 1 HETATM 42 C C2' FAD . . . I 2 11.452 18.573 13.728 1 40.11 ? C2' FAD 401 C 1 HETATM 43 O O2' FAD . . . I 2 12.726 18.94 13.195 1 40.24 ? O2' FAD 401 C 1 HETATM 44 C C3' FAD . . . I 2 11.496 17.105 14.193 1 40.6 ? C3' FAD 401 C 1 HETATM 45 O O3' FAD . . . I 2 10.199 16.628 14.482 1 40.7 ? O3' FAD 401 C 1 HETATM 46 C C4' FAD . . . I 2 12.265 16.95 15.488 1 40.8 ? C4' FAD 401 C 1 HETATM 47 O O4' FAD . . . I 2 13.584 17.429 15.268 1 41.02 ? O4' FAD 401 C 1 HETATM 48 C C5' FAD . . . I 2 12.388 15.504 15.881 1 41.19 ? C5' FAD 401 C 1 HETATM 49 O O5' FAD . . . I 2 13.227 15.473 17.024 1 42.89 ? O5' FAD 401 C 1 HETATM 50 P P FAD . . . I 2 13.573 14.03 17.697 1 43.76 ? P FAD 401 C 1 HETATM 51 O O1P FAD . . . I 2 14.16 14.238 19.082 1 44.37 ? O1P FAD 401 C 1 HETATM 52 O O2P FAD . . . I 2 12.425 13.112 17.461 1 44.86 ? O2P FAD 401 C 1 HETATM 53 O O3P FAD . . . I 2 14.781 13.516 16.749 1 42.42 ? O3P FAD 401 C 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 56 _model_server_stats.query_time_ms 305 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 53 #