data_3W4J
#
_model_server_result.job_id            nYOoEEFABoI08kHYJO-eoQ 
_model_server_result.datetime_utc      '2025-07-15 19:05:22' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3w4j 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"I","auth_seq_id":401}' 
#
_entry.id    3W4J 
#
_exptl.entry_id    3W4J 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              785.55 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'FLAVIN-ADENINE DINUCLEOTIDE' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3W4J 
_cell.length_a            149.249 
_cell.length_b            182.325 
_cell.length_c            50.675 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3W4J 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
PISA tetrameric 4 software_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,E,F,G,H 1 1 
C,D,I,J,K,L 2 1 
A,B,C,D,E,F,G,H,I,J,K,L 3 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 G N N 
? 2 I N N 
? 2 K N N 
#
_chem_comp.formula           'C27 H33 N9 O15 P2' 
_chem_comp.formula_weight    785.55 
_chem_comp.id                FAD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'FLAVIN-ADENINE DINUCLEOTIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A FAD doub 113 n n 
PA O2A FAD sing 114 n n 
PA O5B FAD sing 115 n n 
PA O3P FAD sing 116 n n 
O2A HOA2 FAD sing 117 n n 
O5B C5B FAD sing 118 n n 
C5B C4B FAD sing 119 n n 
C5B H51A FAD sing 120 n n 
C5B H52A FAD sing 121 n n 
C4B O4B FAD sing 122 n n 
C4B C3B FAD sing 123 n n 
C4B H4B FAD sing 124 n n 
O4B C1B FAD sing 125 n n 
C3B O3B FAD sing 126 n n 
C3B C2B FAD sing 127 n n 
C3B H3B FAD sing 128 n n 
O3B HO3A FAD sing 129 n n 
C2B O2B FAD sing 130 n n 
C2B C1B FAD sing 131 n n 
C2B H2B FAD sing 132 n n 
O2B HO2A FAD sing 133 n n 
C1B N9A FAD sing 134 n n 
C1B H1B FAD sing 135 n n 
N9A C8A FAD sing 136 n y 
N9A C4A FAD sing 137 n y 
C8A N7A FAD doub 138 n y 
C8A H8A FAD sing 139 n n 
N7A C5A FAD sing 140 n y 
C5A C6A FAD sing 141 n y 
C5A C4A FAD doub 142 n y 
C6A N6A FAD sing 143 n n 
C6A N1A FAD doub 144 n y 
N6A H61A FAD sing 145 n n 
N6A H62A FAD sing 146 n n 
N1A C2A FAD sing 147 n y 
C2A N3A FAD doub 148 n y 
C2A H2A FAD sing 149 n n 
N3A C4A FAD sing 150 n y 
N1 C2 FAD sing 151 n n 
N1 C10 FAD doub 152 n n 
C2 O2 FAD doub 153 n n 
C2 N3 FAD sing 154 n n 
N3 C4 FAD sing 155 n n 
N3 HN3 FAD sing 156 n n 
C4 O4 FAD doub 157 n n 
C4 C4X FAD sing 158 n n 
C4X N5 FAD doub 159 n n 
C4X C10 FAD sing 160 n n 
N5 C5X FAD sing 161 n n 
C5X C6 FAD doub 162 n y 
C5X C9A FAD sing 163 n y 
C6 C7 FAD sing 164 n y 
C6 H6 FAD sing 165 n n 
C7 C7M FAD sing 166 n n 
C7 C8 FAD doub 167 n y 
C7M HM71 FAD sing 168 n n 
C7M HM72 FAD sing 169 n n 
C7M HM73 FAD sing 170 n n 
C8 C8M FAD sing 171 n n 
C8 C9 FAD sing 172 n y 
C8M HM81 FAD sing 173 n n 
C8M HM82 FAD sing 174 n n 
C8M HM83 FAD sing 175 n n 
C9 C9A FAD doub 176 n y 
C9 H9 FAD sing 177 n n 
C9A N10 FAD sing 178 n n 
N10 C10 FAD sing 179 n n 
N10 C1' FAD sing 180 n n 
C1' C2' FAD sing 181 n n 
C1' "H1'1" FAD sing 182 n n 
C1' "H1'2" FAD sing 183 n n 
C2' O2' FAD sing 184 n n 
C2' C3' FAD sing 185 n n 
C2' H2' FAD sing 186 n n 
O2' HO2' FAD sing 187 n n 
C3' O3' FAD sing 188 n n 
C3' C4' FAD sing 189 n n 
C3' H3' FAD sing 190 n n 
O3' HO3' FAD sing 191 n n 
C4' O4' FAD sing 192 n n 
C4' C5' FAD sing 193 n n 
C4' H4' FAD sing 194 n n 
O4' HO4' FAD sing 195 n n 
C5' O5' FAD sing 196 n n 
C5' "H5'1" FAD sing 197 n n 
C5' "H5'2" FAD sing 198 n n 
O5' P FAD sing 199 n n 
P O1P FAD doub 200 n n 
P O2P FAD sing 201 n n 
P O3P FAD sing 202 n n 
O2P HOP2 FAD sing 203 n n 
#
_atom_sites.entry_id                     3W4J 
_atom_sites.fract_transf_matrix[1][1]    0.0067 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.005485 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.019734 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 FAD A 1 401 401 FAD FAD . 
F 3 2LD A 1 402 501 2LD LIG . 
G 2 FAD B 1 401 401 FAD FAD . 
H 3 2LD B 1 402 501 2LD LIG . 
I 2 FAD C 1 401 401 FAD FAD . 
J 3 2LD C 1 402 501 2LD LIG . 
K 2 FAD D 1 401 401 FAD FAD . 
L 3 2LD D 1 402 501 2LD LIG . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA FAD . . . I 2 58.522 76.921 16.616 1 46.5 ? PA FAD 401 C 1 
HETATM 2 O O1A FAD . . . I 2 58.743 75.459 16.9 1 47.42 ? O1A FAD 401 C 1 
HETATM 3 O O2A FAD . . . I 2 57.975 77.32 15.26 1 45.5 ? O2A FAD 401 C 1 
HETATM 4 O O5B FAD . . . I 2 57.439 77.524 17.673 1 42.88 ? O5B FAD 401 C 1 
HETATM 5 C C5B FAD . . . I 2 57.272 78.929 17.618 1 38.07 ? C5B FAD 401 C 1 
HETATM 6 C C4B FAD . . . I 2 56.303 79.316 18.707 1 38.74 ? C4B FAD 401 C 1 
HETATM 7 O O4B FAD . . . I 2 56.326 80.73 18.956 1 41.3 ? O4B FAD 401 C 1 
HETATM 8 C C3B FAD . . . I 2 54.926 78.968 18.233 1 40.75 ? C3B FAD 401 C 1 
HETATM 9 O O3B FAD . . . I 2 54.184 78.457 19.339 1 39.47 ? O3B FAD 401 C 1 
HETATM 10 C C2B FAD . . . I 2 54.304 80.269 17.842 1 43 ? C2B FAD 401 C 1 
HETATM 11 O O2B FAD . . . I 2 52.91 80.077 18.016 1 39.09 ? O2B FAD 401 C 1 
HETATM 12 C C1B FAD . . . I 2 54.97 81.231 18.829 1 46.16 ? C1B FAD 401 C 1 
HETATM 13 N N9A FAD . . . I 2 54.884 82.646 18.421 1 47.3 ? N9A FAD 401 C 1 
HETATM 14 C C8A FAD . . . I 2 55.587 83.332 17.46 1 48.19 ? C8A FAD 401 C 1 
HETATM 15 N N7A FAD . . . I 2 55.216 84.608 17.406 1 48.04 ? N7A FAD 401 C 1 
HETATM 16 C C5A FAD . . . I 2 54.232 84.771 18.355 1 47.08 ? C5A FAD 401 C 1 
HETATM 17 C C6A FAD . . . I 2 53.444 85.852 18.779 1 48.25 ? C6A FAD 401 C 1 
HETATM 18 N N6A FAD . . . I 2 53.498 87.148 18.244 1 46.95 ? N6A FAD 401 C 1 
HETATM 19 N N1A FAD . . . I 2 52.565 85.64 19.78 1 47.39 ? N1A FAD 401 C 1 
HETATM 20 C C2A FAD . . . I 2 52.509 84.419 20.302 1 47.08 ? C2A FAD 401 C 1 
HETATM 21 N N3A FAD . . . I 2 53.187 83.31 19.958 1 48.04 ? N3A FAD 401 C 1 
HETATM 22 C C4A FAD . . . I 2 54.037 83.553 18.977 1 47.15 ? C4A FAD 401 C 1 
HETATM 23 N N1 FAD . . . I 2 65.287 70.094 13.578 1 35.48 ? N1 FAD 401 C 1 
HETATM 24 C C2 FAD . . . I 2 65.985 69.098 14.157 1 37.13 ? C2 FAD 401 C 1 
HETATM 25 O O2 FAD . . . I 2 66.654 69.377 15.151 1 38.16 ? O2 FAD 401 C 1 
HETATM 26 N N3 FAD . . . I 2 65.89 67.834 13.627 1 35.27 ? N3 FAD 401 C 1 
HETATM 27 C C4 FAD . . . I 2 65.178 67.521 12.554 1 35.52 ? C4 FAD 401 C 1 
HETATM 28 O O4 FAD . . . I 2 65.094 66.4 12.105 1 36.74 ? O4 FAD 401 C 1 
HETATM 29 C C4X FAD . . . I 2 64.477 68.619 11.921 1 36.89 ? C4X FAD 401 C 1 
HETATM 30 N N5 FAD . . . I 2 63.751 68.341 10.824 1 37.93 ? N5 FAD 401 C 1 
HETATM 31 C C5X FAD . . . I 2 63.126 69.405 10.312 1 36.2 ? C5X FAD 401 C 1 
HETATM 32 C C6 FAD . . . I 2 62.373 69.232 9.179 1 36.35 ? C6 FAD 401 C 1 
HETATM 33 C C7 FAD . . . I 2 61.719 70.319 8.626 1 37.63 ? C7 FAD 401 C 1 
HETATM 34 C C7M FAD . . . I 2 60.896 70.114 7.401 1 36.22 ? C7M FAD 401 C 1 
HETATM 35 C C8 FAD . . . I 2 61.827 71.585 9.213 1 37.6 ? C8 FAD 401 C 1 
HETATM 36 C C8M FAD . . . I 2 61.123 72.793 8.691 1 36.89 ? C8M FAD 401 C 1 
HETATM 37 C C9 FAD . . . I 2 62.586 71.745 10.339 1 35.73 ? C9 FAD 401 C 1 
HETATM 38 C C9A FAD . . . I 2 63.216 70.666 10.874 1 35.14 ? C9A FAD 401 C 1 
HETATM 39 N N10 FAD . . . I 2 63.932 70.871 11.964 1 36.87 ? N10 FAD 401 C 1 
HETATM 40 C C10 FAD . . . I 2 64.57 69.859 12.482 1 36.03 ? C10 FAD 401 C 1 
HETATM 41 C C1' FAD . . . I 2 64.092 72.194 12.636 1 37.95 ? C1' FAD 401 C 1 
HETATM 42 C C2' FAD . . . I 2 63.175 72.431 13.852 1 39.04 ? C2' FAD 401 C 1 
HETATM 43 O O2' FAD . . . I 2 61.851 72.023 13.528 1 39.76 ? O2' FAD 401 C 1 
HETATM 44 C C3' FAD . . . I 2 63.12 73.889 14.331 1 38.71 ? C3' FAD 401 C 1 
HETATM 45 O O3' FAD . . . I 2 64.427 74.383 14.556 1 39.06 ? O3' FAD 401 C 1 
HETATM 46 C C4' FAD . . . I 2 62.491 74.055 15.705 1 39.45 ? C4' FAD 401 C 1 
HETATM 47 O O4' FAD . . . I 2 61.175 73.523 15.646 1 40.76 ? O4' FAD 401 C 1 
HETATM 48 C C5' FAD . . . I 2 62.381 75.505 16.193 1 40.92 ? C5' FAD 401 C 1 
HETATM 49 O O5' FAD . . . I 2 61.365 75.57 17.206 1 43.92 ? O5' FAD 401 C 1 
HETATM 50 P P FAD . . . I 2 61.044 76.956 17.958 1 43.12 ? P FAD 401 C 1 
HETATM 51 O O1P FAD . . . I 2 60.356 76.874 19.292 1 47.42 ? O1P FAD 401 C 1 
HETATM 52 O O2P FAD . . . I 2 62.348 77.614 17.805 1 50.1 ? O2P FAD 401 C 1 
HETATM 53 O O3P FAD . . . I 2 59.897 77.662 17.072 1 43.16 ? O3P FAD 401 C 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           17 
_model_server_stats.create_model_time_ms    19 
_model_server_stats.query_time_ms           336 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           53 
#