data_3W4J
#
_model_server_result.job_id            JIYJdJUf-yd2jiJwaWlg5g 
_model_server_result.datetime_utc      '2024-12-21 14:37:03' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3w4j 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"L","auth_seq_id":402}' 
#
_entry.id    3W4J 
#
_exptl.entry_id    3W4J 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              215.248 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            3-hydroxy-5-(2-phenylethyl)pyridin-2(1H)-one 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3W4J 
_cell.length_a            149.249 
_cell.length_b            182.325 
_cell.length_c            50.675 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3W4J 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
PISA tetrameric 4 software_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,E,F,G,H 1 1 
C,D,I,J,K,L 2 1 
A,B,C,D,E,F,G,H,I,J,K,L 3 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 F N N 
? 3 H N N 
? 3 J N N 
? 3 L N N 
#
_chem_comp.formula           'C13 H13 N O2' 
_chem_comp.formula_weight    215.248 
_chem_comp.id                2LD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              3-hydroxy-5-(2-phenylethyl)pyridin-2(1H)-one 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C8 N14 2LD sing 1 n n 
C8 C9 2LD doub 2 n n 
N14 C11 2LD sing 3 n n 
C13 C9 2LD sing 4 n n 
C13 C12 2LD sing 5 n n 
C9 C7 2LD sing 6 n n 
C5 C3 2LD doub 7 n y 
C5 C6 2LD sing 8 n y 
C11 O15 2LD doub 9 n n 
C11 C10 2LD sing 10 n n 
C3 C1 2LD sing 11 n y 
C12 C6 2LD sing 12 n n 
C7 C10 2LD doub 13 n n 
C6 C4 2LD doub 14 n y 
C10 O16 2LD sing 15 n n 
C1 C2 2LD doub 16 n y 
C4 C2 2LD sing 17 n y 
C4 H1 2LD sing 18 n n 
C5 H2 2LD sing 19 n n 
C7 H3 2LD sing 20 n n 
C8 H4 2LD sing 21 n n 
C13 H5 2LD sing 22 n n 
C13 H6 2LD sing 23 n n 
C1 H7 2LD sing 24 n n 
C2 H8 2LD sing 25 n n 
C3 H9 2LD sing 26 n n 
C12 H11 2LD sing 27 n n 
C12 H12 2LD sing 28 n n 
O16 H13 2LD sing 29 n n 
N14 H10 2LD sing 30 n n 
#
_atom_sites.entry_id                     3W4J 
_atom_sites.fract_transf_matrix[1][1]    0.0067 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.005485 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.019734 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 FAD A 1 401 401 FAD FAD . 
F 3 2LD A 1 402 501 2LD LIG . 
G 2 FAD B 1 401 401 FAD FAD . 
H 3 2LD B 1 402 501 2LD LIG . 
I 2 FAD C 1 401 401 FAD FAD . 
J 3 2LD C 1 402 501 2LD LIG . 
K 2 FAD D 1 401 401 FAD FAD . 
L 3 2LD D 1 402 501 2LD LIG . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C4 2LD . . . L 3 70.328 34.508 18.421 1 41.84 ? C4 2LD 402 D 1 
HETATM 2 C C5 2LD . . . L 3 71.104 34.422 16.144 1 42.2 ? C5 2LD 402 D 1 
HETATM 3 C C6 2LD . . . L 3 70.124 34.736 17.067 1 41.53 ? C6 2LD 402 D 1 
HETATM 4 C C7 2LD . . . L 3 66.84 33.054 16.914 1 34.52 ? C7 2LD 402 D 1 
HETATM 5 C C8 2LD . . . L 3 68.188 32.06 15.208 1 34.91 ? C8 2LD 402 D 1 
HETATM 6 C C10 2LD . . . L 3 66.358 31.891 17.344 1 34.5 ? C10 2LD 402 D 1 
HETATM 7 C C13 2LD . . . L 3 68.218 34.53 15.453 1 36.36 ? C13 2LD 402 D 1 
HETATM 8 C C1 2LD . . . L 3 72.485 33.702 17.961 1 43.92 ? C1 2LD 402 D 1 
HETATM 9 C C2 2LD . . . L 3 71.514 33.991 18.894 1 41.31 ? C2 2LD 402 D 1 
HETATM 10 C C3 2LD . . . L 3 72.294 33.905 16.592 1 43.32 ? C3 2LD 402 D 1 
HETATM 11 C C9 2LD . . . L 3 67.766 33.164 15.833 1 36.3 ? C9 2LD 402 D 1 
HETATM 12 C C11 2LD . . . L 3 66.811 30.66 16.636 1 36.43 ? C11 2LD 402 D 1 
HETATM 13 C C12 2LD . . . L 3 68.812 35.302 16.618 1 40.89 ? C12 2LD 402 D 1 
HETATM 14 N N14 2LD . . . L 3 67.719 30.839 15.605 1 33.54 ? N14 2LD 402 D 1 
HETATM 15 O O15 2LD . . . L 3 66.366 29.565 16.983 1 38.21 ? O15 2LD 402 D 1 
HETATM 16 O O16 2LD . . . L 3 65.453 31.798 18.366 1 32.32 ? O16 2LD 402 D 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    17 
_model_server_stats.query_time_ms           259 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           16 
#