data_3W4J # _model_server_result.job_id BiK888igTY7tkaTCYeEaEw _model_server_result.datetime_utc '2024-12-13 00:32:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3w4j # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":402}' # _entry.id 3W4J # _exptl.entry_id 3W4J _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 215.248 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 3-hydroxy-5-(2-phenylethyl)pyridin-2(1H)-one _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3W4J _cell.length_a 149.249 _cell.length_b 182.325 _cell.length_c 50.675 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3W4J _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 PISA tetrameric 4 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,G,H 1 1 C,D,I,J,K,L 2 1 A,B,C,D,E,F,G,H,I,J,K,L 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 F N N ? 3 H N N ? 3 J N N ? 3 L N N # _chem_comp.formula 'C13 H13 N O2' _chem_comp.formula_weight 215.248 _chem_comp.id 2LD _chem_comp.mon_nstd_flag . _chem_comp.name 3-hydroxy-5-(2-phenylethyl)pyridin-2(1H)-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C8 N14 2LD sing 1 n n C8 C9 2LD doub 2 n n N14 C11 2LD sing 3 n n C13 C9 2LD sing 4 n n C13 C12 2LD sing 5 n n C9 C7 2LD sing 6 n n C5 C3 2LD doub 7 n y C5 C6 2LD sing 8 n y C11 O15 2LD doub 9 n n C11 C10 2LD sing 10 n n C3 C1 2LD sing 11 n y C12 C6 2LD sing 12 n n C7 C10 2LD doub 13 n n C6 C4 2LD doub 14 n y C10 O16 2LD sing 15 n n C1 C2 2LD doub 16 n y C4 C2 2LD sing 17 n y C4 H1 2LD sing 18 n n C5 H2 2LD sing 19 n n C7 H3 2LD sing 20 n n C8 H4 2LD sing 21 n n C13 H5 2LD sing 22 n n C13 H6 2LD sing 23 n n C1 H7 2LD sing 24 n n C2 H8 2LD sing 25 n n C3 H9 2LD sing 26 n n C12 H11 2LD sing 27 n n C12 H12 2LD sing 28 n n O16 H13 2LD sing 29 n n N14 H10 2LD sing 30 n n # _atom_sites.entry_id 3W4J _atom_sites.fract_transf_matrix[1][1] 0.0067 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005485 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019734 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 FAD A 1 401 401 FAD FAD . F 3 2LD A 1 402 501 2LD LIG . G 2 FAD B 1 401 401 FAD FAD . H 3 2LD B 1 402 501 2LD LIG . I 2 FAD C 1 401 401 FAD FAD . J 3 2LD C 1 402 501 2LD LIG . K 2 FAD D 1 401 401 FAD FAD . L 3 2LD D 1 402 501 2LD LIG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 2LD . . . H 3 27.334 33.611 6.657 1 45.02 ? C4 2LD 402 B 1 HETATM 2 C C5 2LD . . . H 3 26.764 33.45 9.003 1 44.37 ? C5 2LD 402 B 1 HETATM 3 C C6 2LD . . . H 3 27.613 33.852 7.982 1 43.76 ? C6 2LD 402 B 1 HETATM 4 C C7 2LD . . . H 3 30.854 32.33 8.099 1 36.81 ? C7 2LD 402 B 1 HETATM 5 C C8 2LD . . . H 3 29.741 31.457 10.033 1 35.89 ? C8 2LD 402 B 1 HETATM 6 C C10 2LD . . . H 3 31.383 31.145 7.799 1 35.89 ? C10 2LD 402 B 1 HETATM 7 C C13 2LD . . . H 3 29.462 33.863 9.538 1 40.43 ? C13 2LD 402 B 1 HETATM 8 C C1 2LD . . . H 3 25.311 32.552 7.366 1 45.83 ? C1 2LD 402 B 1 HETATM 9 C C2 2LD . . . H 3 26.165 32.941 6.353 1 45.73 ? C2 2LD 402 B 1 HETATM 10 C C3 2LD . . . H 3 25.592 32.794 8.7 1 44.85 ? C3 2LD 402 B 1 HETATM 11 C C9 2LD . . . H 3 30.007 32.499 9.242 1 38.45 ? C9 2LD 402 B 1 HETATM 12 C C11 2LD . . . H 3 31.058 29.982 8.679 1 37.81 ? C11 2LD 402 B 1 HETATM 13 C C12 2LD . . . H 3 28.873 34.546 8.311 1 44.82 ? C12 2LD 402 B 1 HETATM 14 N N14 2LD . . . H 3 30.251 30.23 9.77 1 34.96 ? N14 2LD 402 B 1 HETATM 15 O O15 2LD . . . H 3 31.516 28.873 8.431 1 39.56 ? O15 2LD 402 B 1 HETATM 16 O O16 2LD . . . H 3 32.192 30.981 6.718 1 35.95 ? O16 2LD 402 B 1 # _model_server_stats.io_time_ms 28 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 39 _model_server_stats.query_time_ms 289 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 16 #