data_3W5A # _model_server_result.job_id EYVo4KvlvqWtcvT8ag61bA _model_server_result.datetime_utc '2024-11-23 22:07:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3w5a # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":1002}' # _entry.id 3W5A # _exptl.entry_id 3W5A _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 734.039 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description PHOSPHATIDYLETHANOLAMINE _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 119.02 _cell.angle_gamma 90 _cell.entry_id 3W5A _cell.length_a 352.883 _cell.length_b 55.729 _cell.length_c 187.951 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3W5A _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 F N N ? 4 K N N ? 4 L N N ? 4 M N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 877 A CYS 876 1_555 A SG CYS 889 A CYS 888 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf2 B SG CYS 877 B CYS 876 1_555 B SG CYS 889 B CYS 888 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? covale ? covale1 A C ACE 1 A ACE 0 1_555 A N MET 2 A MET 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? covale ? covale2 B C ACE 1 B ACE 0 1_555 B N MET 2 B MET 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? metalc ? metalc1 A O ALA 306 A ALA 305 1_555 G MG MG . A MG 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.736 ? metalc ? metalc2 A O LEU 712 A LEU 711 1_555 I NA NA . A NA 1006 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.436 ? metalc ? metalc3 A O LYS 713 A LYS 712 1_555 I NA NA . A NA 1006 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.819 ? metalc ? metalc4 A O ALA 715 A ALA 714 1_555 I NA NA . A NA 1006 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.591 ? metalc ? metalc5 A OE1 GLU 733 A GLU 732 1_555 I NA NA . A NA 1006 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.569 ? metalc ? metalc6 A OE2 GLU 733 A GLU 732 1_555 I NA NA . A NA 1006 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.722 ? metalc ? metalc7 A OE1 GLU 772 A GLU 771 1_555 G MG MG . A MG 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.445 ? metalc ? metalc8 A OD1 ASN 797 A ASN 796 1_555 G MG MG . A MG 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.734 ? metalc ? metalc9 A OD2 ASP 801 A ASP 800 1_555 G MG MG . A MG 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.574 ? metalc ? metalc10 G MG MG . A MG 1004 1_555 Q O HOH . A HOH 4002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.313 ? metalc ? metalc11 H MG MG . A MG 1005 1_555 Q O HOH . A HOH 4003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.995 ? metalc ? metalc12 H MG MG . A MG 1005 1_555 Q O HOH . A HOH 4004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.765 ? metalc ? metalc13 H MG MG . A MG 1005 1_555 Q O HOH . A HOH 4005 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.36 ? metalc ? metalc14 H MG MG . A MG 1005 1_555 Q O HOH . A HOH 4006 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.23 ? metalc ? metalc15 B O ALA 306 B ALA 305 1_555 N MG MG . B MG 1005 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.157 ? metalc ? metalc16 B O LEU 712 B LEU 711 1_555 P NA NA . B NA 1007 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.03 ? metalc ? metalc17 B O LYS 713 B LYS 712 1_555 P NA NA . B NA 1007 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.835 ? metalc ? metalc18 B O ALA 715 B ALA 714 1_555 P NA NA . B NA 1007 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.095 ? metalc ? metalc19 B OE1 GLU 733 B GLU 732 1_555 P NA NA . B NA 1007 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.565 ? metalc ? metalc20 B OE2 GLU 733 B GLU 732 1_555 P NA NA . B NA 1007 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.83 ? metalc ? metalc21 B OD1 ASN 769 B ASN 768 1_555 N MG MG . B MG 1005 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.521 ? metalc ? metalc22 B OE1 GLU 772 B GLU 771 1_555 N MG MG . B MG 1005 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.717 ? metalc ? metalc23 B OD1 ASN 797 B ASN 796 1_555 N MG MG . B MG 1005 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.251 ? metalc ? metalc24 B OD2 ASP 801 B ASP 800 1_555 N MG MG . B MG 1005 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.87 ? metalc ? metalc25 N MG MG . B MG 1005 1_555 R O HOH . B HOH 4002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.986 ? metalc ? metalc26 O MG MG . B MG 1006 1_555 R O HOH . B HOH 4003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.453 ? metalc ? metalc27 O MG MG . B MG 1006 1_555 R O HOH . B HOH 4004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.198 ? metalc ? metalc28 O MG MG . B MG 1006 1_555 R O HOH . B HOH 4005 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.58 ? metalc ? metalc29 O MG MG . B MG 1006 1_555 R O HOH . B HOH 4006 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.99 ? # _chem_comp.formula 'C40 H80 N O8 P' _chem_comp.formula_weight 734.039 _chem_comp.id PTY _chem_comp.mon_nstd_flag . _chem_comp.name PHOSPHATIDYLETHANOLAMINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O4 PTY sing 283 n n C1 C6 PTY sing 284 n n C1 HC11 PTY sing 285 n n C1 HC12 PTY sing 286 n n C2 C3 PTY sing 287 n n C2 N1 PTY sing 288 n n C2 HC21 PTY sing 289 n n C2 HC22 PTY sing 290 n n C3 O11 PTY sing 291 n n C3 HC31 PTY sing 292 n n C3 HC32 PTY sing 293 n n O4 C30 PTY sing 294 n n C5 C6 PTY sing 295 n n C5 O14 PTY sing 296 n n C5 HC51 PTY sing 297 n n C5 HC52 PTY sing 298 n n C6 O7 PTY sing 299 n n C6 HC6 PTY sing 300 n n O7 C8 PTY sing 301 n n C8 O10 PTY doub 302 n n C8 C11 PTY sing 303 n n C11 C12 PTY sing 304 n n C11 H111 PTY sing 305 n n C11 H112 PTY sing 306 n n C12 C13 PTY sing 307 n n C12 H121 PTY sing 308 n n C12 H122 PTY sing 309 n n C13 C14 PTY sing 310 n n C13 H131 PTY sing 311 n n C13 H132 PTY sing 312 n n C14 C15 PTY sing 313 n n C14 H141 PTY sing 314 n n C14 H142 PTY sing 315 n n C15 C16 PTY sing 316 n n C15 H151 PTY sing 317 n n C15 H152 PTY sing 318 n n C16 C17 PTY sing 319 n n C16 H161 PTY sing 320 n n C16 H162 PTY sing 321 n n C17 C18 PTY sing 322 n n C17 H171 PTY sing 323 n n C17 H172 PTY sing 324 n n C18 C19 PTY sing 325 n n C18 H181 PTY sing 326 n n C18 H182 PTY sing 327 n n C19 C20 PTY sing 328 n n C19 H191 PTY sing 329 n n C19 H192 PTY sing 330 n n C20 C21 PTY sing 331 n n C20 H201 PTY sing 332 n n C20 H202 PTY sing 333 n n C21 C22 PTY sing 334 n n C21 H211 PTY sing 335 n n C21 H212 PTY sing 336 n n C22 C23 PTY sing 337 n n C22 H221 PTY sing 338 n n C22 H222 PTY sing 339 n n C23 C24 PTY sing 340 n n C23 H231 PTY sing 341 n n C23 H232 PTY sing 342 n n C24 C25 PTY sing 343 n n C24 H241 PTY sing 344 n n C24 H242 PTY sing 345 n n C25 C26 PTY sing 346 n n C25 H251 PTY sing 347 n n C25 H252 PTY sing 348 n n C26 C27 PTY sing 349 n n C26 H261 PTY sing 350 n n C26 H262 PTY sing 351 n n C27 C28 PTY sing 352 n n C27 H271 PTY sing 353 n n C27 H272 PTY sing 354 n n C28 C29 PTY sing 355 n n C28 H281 PTY sing 356 n n C28 H282 PTY sing 357 n n C29 H291 PTY sing 358 n n C29 H292 PTY sing 359 n n C29 H293 PTY sing 360 n n C30 C31 PTY sing 361 n n C30 O30 PTY doub 362 n n C31 C32 PTY sing 363 n n C31 H311 PTY sing 364 n n C31 H312 PTY sing 365 n n C32 C33 PTY sing 366 n n C32 H321 PTY sing 367 n n C32 H322 PTY sing 368 n n C33 C34 PTY sing 369 n n C33 H331 PTY sing 370 n n C33 H332 PTY sing 371 n n C34 C35 PTY sing 372 n n C34 H341 PTY sing 373 n n C34 H342 PTY sing 374 n n C35 C36 PTY sing 375 n n C35 H351 PTY sing 376 n n C35 H352 PTY sing 377 n n C36 C37 PTY sing 378 n n C36 H361 PTY sing 379 n n C36 H362 PTY sing 380 n n C37 C38 PTY sing 381 n n C37 H371 PTY sing 382 n n C37 H372 PTY sing 383 n n C38 C39 PTY sing 384 n n C38 H381 PTY sing 385 n n C38 H382 PTY sing 386 n n C39 C40 PTY sing 387 n n C39 H391 PTY sing 388 n n C39 H392 PTY sing 389 n n C40 C41 PTY sing 390 n n C40 H401 PTY sing 391 n n C40 H402 PTY sing 392 n n C41 C42 PTY sing 393 n n C41 H411 PTY sing 394 n n C41 H412 PTY sing 395 n n C42 C43 PTY sing 396 n n C42 H421 PTY sing 397 n n C42 H422 PTY sing 398 n n C43 C44 PTY sing 399 n n C43 H431 PTY sing 400 n n C43 H432 PTY sing 401 n n C44 H441 PTY sing 402 n n C44 H442 PTY sing 403 n n C44 H443 PTY sing 404 n n P1 O11 PTY sing 405 n n P1 O12 PTY sing 406 n n P1 O13 PTY doub 407 n n P1 O14 PTY sing 408 n n O12 H12O PTY sing 409 n n N1 HN11 PTY sing 410 n n N1 HN12 PTY sing 411 n n # _atom_sites.entry_id 3W5A _atom_sites.fract_transf_matrix[1][1] 0.002834 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001572 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017944 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006084 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 3 TM1 A 1 1001 999 TM1 TM1 . E 4 PTY A 1 1002 1001 PTY PTY . F 4 PTY A 1 1003 1002 PTY PTY . G 5 MG A 1 1004 2001 MG MG . H 5 MG A 1 1005 2002 MG MG . I 6 NA A 1 1006 2003 NA NA . J 3 TM1 B 1 1001 999 TM1 TM1 . K 4 PTY B 1 1002 1001 PTY PTY . L 4 PTY B 1 1003 1002 PTY PTY . M 4 PTY B 1 1004 1003 PTY PTY . N 5 MG B 1 1005 2001 MG MG . O 5 MG B 1 1006 2002 MG MG . P 6 NA B 1 1007 2003 NA NA . Q 7 HOH A 1 4001 4001 HOH HOH . Q 7 HOH A 2 4002 4002 HOH HOH . Q 7 HOH A 3 4003 5001 HOH HOH . Q 7 HOH A 4 4004 5002 HOH HOH . Q 7 HOH A 5 4005 5003 HOH HOH . Q 7 HOH A 6 4006 5004 HOH HOH . R 7 HOH B 1 4001 4001 HOH HOH . R 7 HOH B 2 4002 4002 HOH HOH . R 7 HOH B 3 4003 5001 HOH HOH . R 7 HOH B 4 4004 5002 HOH HOH . R 7 HOH B 5 4005 5003 HOH HOH . R 7 HOH B 6 4006 5004 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PTY . . . E 4 117.2 42.629 87.016 1 129.05 ? C1 PTY 1002 A 1 HETATM 2 C C2 PTY . . . E 4 111.19 44.464 87.134 1 110.87 ? C2 PTY 1002 A 1 HETATM 3 C C3 PTY . . . E 4 112.33 43.486 86.877 1 120.19 ? C3 PTY 1002 A 1 HETATM 4 O O4 PTY . . . E 4 117.36 42.205 85.656 1 124.06 ? O4 PTY 1002 A 1 HETATM 5 C C5 PTY . . . E 4 115.597 41.52 88.587 1 141.6 ? C5 PTY 1002 A 1 HETATM 6 C C6 PTY . . . E 4 117.002 41.459 87.987 1 134.05 ? C6 PTY 1002 A 1 HETATM 7 O O7 PTY . . . E 4 117.972 41.557 89.04 1 133.28 ? O7 PTY 1002 A 1 HETATM 8 C C8 PTY . . . E 4 118.244 40.349 89.821 1 127.87 ? C8 PTY 1002 A 1 HETATM 9 O O10 PTY . . . E 4 118.08 39.253 89.31 1 124.74 ? O10 PTY 1002 A 1 HETATM 10 C C11 PTY . . . E 4 118.73 40.489 91.236 1 124.87 ? C11 PTY 1002 A 1 HETATM 11 C C30 PTY . . . E 4 117.69 43.168 84.609 1 119.47 ? C30 PTY 1002 A 1 HETATM 12 C C31 PTY . . . E 4 118.811 42.864 83.66 1 112.16 ? C31 PTY 1002 A 1 HETATM 13 O O30 PTY . . . E 4 117.048 44.206 84.532 1 119.05 ? O30 PTY 1002 A 1 HETATM 14 P P1 PTY . . . E 4 113.034 41.132 87.952 1 149.62 ? P1 PTY 1002 A 1 HETATM 15 O O11 PTY . . . E 4 112.599 42.692 88.036 1 137.84 ? O11 PTY 1002 A 1 HETATM 16 O O12 PTY . . . E 4 112.869 40.539 89.333 1 152.47 ? O12 PTY 1002 A 1 HETATM 17 O O13 PTY . . . E 4 112.335 40.484 86.777 1 143.46 ? O13 PTY 1002 A 1 HETATM 18 O O14 PTY . . . E 4 114.614 41.158 87.614 1 149.52 ? O14 PTY 1002 A 1 HETATM 19 N N1 PTY . . . E 4 111.671 45.557 87.954 1 107.27 ? N1 PTY 1002 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 25 _model_server_stats.query_time_ms 449 _model_server_stats.encode_time_ms 17 _model_server_stats.element_count 19 #