data_3W5D # _model_server_result.job_id 5NFhedxdpkNELXLWElAKvw _model_server_result.datetime_utc '2024-11-06 14:25:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3w5d # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":1005}' # _entry.id 3W5D # _exptl.entry_id 3W5D _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 734.039 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description PHOSPHATIDYLETHANOLAMINE _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3W5D _cell.length_a 71.248 _cell.length_b 71.248 _cell.length_c 587.086 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3W5D _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N ? 3 F N N ? 3 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 877 A CYS 876 1_555 A SG CYS 889 A CYS 888 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? covale ? covale1 A C ACE 1 A ACE 0 1_555 A N MET 2 A MET 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.308 ? metalc ? metalc1 A OE1 GLU 733 A GLU 732 1_555 B NA NA . A NA 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.127 ? metalc ? metalc2 B NA NA . A NA 1001 1_555 J O HOH . A HOH 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.301 ? metalc ? metalc3 B NA NA . A NA 1001 1_555 J O HOH . A HOH 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.354 ? metalc ? metalc4 A O ALA 715 A ALA 714 1_555 B NA NA . A NA 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.468 ? metalc ? metalc5 A O LEU 712 A LEU 711 1_555 B NA NA . A NA 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.594 ? metalc ? metalc6 A OE2 GLU 733 A GLU 732 1_555 B NA NA . A NA 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.809 ? metalc ? metalc7 A O LYS 713 A LYS 712 1_555 B NA NA . A NA 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.13 ? # _chem_comp.formula 'C40 H80 N O8 P' _chem_comp.formula_weight 734.039 _chem_comp.id PTY _chem_comp.mon_nstd_flag . _chem_comp.name PHOSPHATIDYLETHANOLAMINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3W5D _atom_sites.fract_transf_matrix[1][1] 0.014035 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014035 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.001703 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NA A 1 1001 1000 NA NA . C 3 PTY A 1 1002 1011 PTY PTY . D 3 PTY A 1 1003 1012 PTY PTY . E 3 PTY A 1 1004 1013 PTY PTY . F 3 PTY A 1 1005 1014 PTY PTY . G 3 PTY A 1 1006 1015 PTY PTY . H 4 SO4 A 1 1007 6920 SO4 SO4 . I 4 SO4 A 1 1008 6921 SO4 SO4 . J 5 HOH A 1 1101 2020 HOH HOH . J 5 HOH A 2 1102 2021 HOH HOH . J 5 HOH A 3 1103 3001 HOH HOH . J 5 HOH A 4 1104 3002 HOH HOH . J 5 HOH A 5 1105 3003 HOH HOH . J 5 HOH A 6 1106 3004 HOH HOH . J 5 HOH A 7 1107 3005 HOH HOH . J 5 HOH A 8 1108 3006 HOH HOH . J 5 HOH A 9 1109 3012 HOH HOH . J 5 HOH A 10 1110 3014 HOH HOH . J 5 HOH A 11 1111 3023 HOH HOH . J 5 HOH A 12 1112 3024 HOH HOH . J 5 HOH A 13 1113 3025 HOH HOH . J 5 HOH A 14 1114 3028 HOH HOH . J 5 HOH A 15 1115 3029 HOH HOH . J 5 HOH A 16 1116 3032 HOH HOH . J 5 HOH A 17 1117 3034 HOH HOH . J 5 HOH A 18 1118 3036 HOH HOH . J 5 HOH A 19 1119 3038 HOH HOH . J 5 HOH A 20 1120 3039 HOH HOH . J 5 HOH A 21 1121 3040 HOH HOH . J 5 HOH A 22 1122 3041 HOH HOH . J 5 HOH A 23 1123 3042 HOH HOH . J 5 HOH A 24 1124 3043 HOH HOH . J 5 HOH A 25 1125 3044 HOH HOH . J 5 HOH A 26 1126 3045 HOH HOH . J 5 HOH A 27 1127 3046 HOH HOH . J 5 HOH A 28 1128 3047 HOH HOH . J 5 HOH A 29 1129 3048 HOH HOH . J 5 HOH A 30 1130 3049 HOH HOH . J 5 HOH A 31 1131 3050 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PTY . . . F 3 21.16 -30.973 87.234 1 116.38 ? C1 PTY 1005 A 1 HETATM 2 C C2 PTY . . . F 3 22.921 -30.521 94.827 1 121.35 ? C2 PTY 1005 A 1 HETATM 3 C C3 PTY . . . F 3 21.588 -30.386 94.045 1 126.76 ? C3 PTY 1005 A 1 HETATM 4 O O4 PTY . . . F 3 21.107 -32.113 86.371 1 119.97 ? O4 PTY 1005 A 1 HETATM 5 C C5 PTY . . . F 3 20.27 -31.784 89.407 1 120.27 ? C5 PTY 1005 A 1 HETATM 6 C C6 PTY . . . F 3 19.955 -30.938 88.174 1 116.34 ? C6 PTY 1005 A 1 HETATM 7 O O7 PTY . . . F 3 18.777 -31.432 87.519 1 114.51 ? O7 PTY 1005 A 1 HETATM 8 C C8 PTY . . . F 3 18.051 -30.443 86.723 1 109.69 ? C8 PTY 1005 A 1 HETATM 9 O O10 PTY . . . F 3 17.498 -29.512 87.296 1 115.85 ? O10 PTY 1005 A 1 HETATM 10 C C11 PTY . . . F 3 17.96 -30.565 85.212 1 104.51 ? C11 PTY 1005 A 1 HETATM 11 C C30 PTY . . . F 3 21.887 -32.118 85.142 1 119.76 ? C30 PTY 1005 A 1 HETATM 12 C C31 PTY . . . F 3 21.386 -31.46 83.866 1 112.79 ? C31 PTY 1005 A 1 HETATM 13 O O30 PTY . . . F 3 22.972 -32.67 85.168 1 128.63 ? O30 PTY 1005 A 1 HETATM 14 P P1 PTY . . . F 3 20.845 -30.266 91.519 1 136.22 ? P1 PTY 1005 A 1 HETATM 15 O O11 PTY . . . F 3 21.828 -30.797 92.687 1 134.33 ? O11 PTY 1005 A 1 HETATM 16 O O12 PTY . . . F 3 19.43 -30.643 91.917 1 138.89 ? O12 PTY 1005 A 1 HETATM 17 O O13 PTY . . . F 3 21.199 -28.814 91.269 1 132.18 ? O13 PTY 1005 A 1 HETATM 18 O O14 PTY . . . F 3 21.258 -31.141 90.221 1 127.55 ? O14 PTY 1005 A 1 HETATM 19 N N1 PTY . . . F 3 22.778 -29.907 96.156 1 119.13 ? N1 PTY 1005 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 23 _model_server_stats.query_time_ms 306 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 19 #