data_3W5K # _model_server_result.job_id 2o-w8p5_FsxFKbEDzuOESQ _model_server_result.datetime_utc '2025-03-05 20:22:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3w5k # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":503}' # _entry.id 3W5K # _exptl.entry_id 3W5K _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 100.96 _cell.angle_gamma 90 _cell.entry_id 3W5K _cell.length_a 228.21 _cell.length_b 77.528 _cell.length_c 72.019 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3W5K _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 B SG CYS 156 B CYS 156 1_555 C ZN ZN . B ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.191 ? metalc ? metalc2 B SG CYS 159 B CYS 159 1_555 C ZN ZN . B ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.325 ? metalc ? metalc3 B NZ LYS 161 B LYS 161 1_555 C ZN ZN . B ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.515 ? metalc ? metalc4 B NE2 HIS 172 B HIS 172 1_555 C ZN ZN . B ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.078 ? metalc ? metalc5 B NE2 HIS 176 B HIS 176 1_555 C ZN ZN . B ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.243 ? metalc ? metalc6 B SG CYS 182 B CYS 182 1_555 D ZN ZN . B ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.291 ? metalc ? metalc7 B SG CYS 185 B CYS 185 1_555 D ZN ZN . B ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.258 ? metalc ? metalc8 B NE2 HIS 198 B HIS 198 1_555 D ZN ZN . B ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? metalc ? metalc9 B NE2 HIS 202 B HIS 202 1_555 D ZN ZN . B ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.125 ? metalc ? metalc10 B SG CYS 210 B CYS 210 1_555 E ZN ZN . B ZN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.493 ? metalc ? metalc11 B SG CYS 213 B CYS 213 1_555 E ZN ZN . B ZN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.206 ? metalc ? metalc12 B NE2 HIS 226 B HIS 226 1_555 E ZN ZN . B ZN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.069 ? metalc ? metalc13 B NE2 HIS 230 B HIS 230 1_555 E ZN ZN . B ZN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.99 ? metalc ? metalc14 B SG CYS 238 B CYS 238 1_555 F ZN ZN . B ZN 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.305 ? metalc ? metalc15 B SG CYS 241 B CYS 241 1_555 F ZN ZN . B ZN 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.215 ? metalc ? metalc16 B NE2 HIS 254 B HIS 254 1_555 F ZN ZN . B ZN 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.078 ? metalc ? metalc17 B SG CYS 259 B CYS 259 1_555 F ZN ZN . B ZN 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.322 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3W5K _atom_sites.fract_transf_matrix[1][1] 0.004382 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000849 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012899 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014143 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 ZN B 1 501 501 ZN ZN . D 3 ZN B 1 502 502 ZN ZN . E 3 ZN B 1 503 503 ZN ZN . F 3 ZN B 1 504 504 ZN ZN . G 4 HOH A 1 901 1 HOH HOH . G 4 HOH A 2 902 2 HOH HOH . G 4 HOH A 3 903 3 HOH HOH . G 4 HOH A 4 904 4 HOH HOH . G 4 HOH A 5 905 6 HOH HOH . G 4 HOH A 6 906 7 HOH HOH . G 4 HOH A 7 907 8 HOH HOH . G 4 HOH A 8 908 9 HOH HOH . G 4 HOH A 9 909 10 HOH HOH . G 4 HOH A 10 910 11 HOH HOH . G 4 HOH A 11 911 12 HOH HOH . G 4 HOH A 12 912 13 HOH HOH . G 4 HOH A 13 913 14 HOH HOH . G 4 HOH A 14 914 16 HOH HOH . G 4 HOH A 15 915 18 HOH HOH . G 4 HOH A 16 916 19 HOH HOH . G 4 HOH A 17 917 20 HOH HOH . G 4 HOH A 18 918 21 HOH HOH . G 4 HOH A 19 919 23 HOH HOH . G 4 HOH A 20 920 24 HOH HOH . G 4 HOH A 21 921 25 HOH HOH . G 4 HOH A 22 922 26 HOH HOH . G 4 HOH A 23 923 27 HOH HOH . G 4 HOH A 24 924 29 HOH HOH . G 4 HOH A 25 925 30 HOH HOH . G 4 HOH A 26 926 31 HOH HOH . G 4 HOH A 27 927 33 HOH HOH . G 4 HOH A 28 928 35 HOH HOH . G 4 HOH A 29 929 36 HOH HOH . G 4 HOH A 30 930 37 HOH HOH . G 4 HOH A 31 931 38 HOH HOH . G 4 HOH A 32 932 39 HOH HOH . G 4 HOH A 33 933 40 HOH HOH . G 4 HOH A 34 934 41 HOH HOH . G 4 HOH A 35 935 42 HOH HOH . G 4 HOH A 36 936 44 HOH HOH . G 4 HOH A 37 937 46 HOH HOH . G 4 HOH A 38 938 47 HOH HOH . G 4 HOH A 39 939 49 HOH HOH . G 4 HOH A 40 940 50 HOH HOH . G 4 HOH A 41 941 51 HOH HOH . G 4 HOH A 42 942 52 HOH HOH . G 4 HOH A 43 943 53 HOH HOH . G 4 HOH A 44 944 55 HOH HOH . G 4 HOH A 45 945 56 HOH HOH . G 4 HOH A 46 946 57 HOH HOH . G 4 HOH A 47 947 58 HOH HOH . G 4 HOH A 48 948 59 HOH HOH . G 4 HOH A 49 949 60 HOH HOH . H 4 HOH B 1 601 5 HOH HOH . H 4 HOH B 2 602 15 HOH HOH . H 4 HOH B 3 603 17 HOH HOH . H 4 HOH B 4 604 22 HOH HOH . H 4 HOH B 5 605 28 HOH HOH . H 4 HOH B 6 606 32 HOH HOH . H 4 HOH B 7 607 34 HOH HOH . H 4 HOH B 8 608 43 HOH HOH . H 4 HOH B 9 609 45 HOH HOH . H 4 HOH B 10 610 48 HOH HOH . H 4 HOH B 11 611 54 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id E _atom_site.label_entity_id 3 _atom_site.Cartn_x 40.212 _atom_site.Cartn_y -24.508 _atom_site.Cartn_z -29.539 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 107.21 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 503 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 213 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #