data_3W5O # _model_server_result.job_id rK5BxFN_i-QH7Vg2_so0eA _model_server_result.datetime_utc '2024-11-04 20:08:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3w5o # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":701}' # _entry.id 3W5O # _exptl.entry_id 3W5O _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 507.181 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 94.08 _cell.angle_gamma 90 _cell.entry_id 3W5O _cell.length_a 68.29 _cell.length_b 104.36 _cell.length_c 120.04 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3W5O _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H,I,J,K,L,M,N,O,P,CA 1 1 B,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,DA 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 Q N N # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 70 n n PG O2G ATP sing 71 n n PG O3G ATP sing 72 n n PG O3B ATP sing 73 n n O2G HOG2 ATP sing 74 n n O3G HOG3 ATP sing 75 n n PB O1B ATP doub 76 n n PB O2B ATP sing 77 n n PB O3B ATP sing 78 n n PB O3A ATP sing 79 n n O2B HOB2 ATP sing 80 n n PA O1A ATP doub 81 n n PA O2A ATP sing 82 n n PA O3A ATP sing 83 n n PA O5' ATP sing 84 n n O2A HOA2 ATP sing 85 n n O5' C5' ATP sing 86 n n C5' C4' ATP sing 87 n n C5' "H5'1" ATP sing 88 n n C5' "H5'2" ATP sing 89 n n C4' O4' ATP sing 90 n n C4' C3' ATP sing 91 n n C4' H4' ATP sing 92 n n O4' C1' ATP sing 93 n n C3' O3' ATP sing 94 n n C3' C2' ATP sing 95 n n C3' H3' ATP sing 96 n n O3' HO3' ATP sing 97 n n C2' O2' ATP sing 98 n n C2' C1' ATP sing 99 n n C2' H2' ATP sing 100 n n O2' HO2' ATP sing 101 n n C1' N9 ATP sing 102 n n C1' H1' ATP sing 103 n n N9 C8 ATP sing 104 n y N9 C4 ATP sing 105 n y C8 N7 ATP doub 106 n y C8 H8 ATP sing 107 n n N7 C5 ATP sing 108 n y C5 C6 ATP sing 109 n y C5 C4 ATP doub 110 n y C6 N6 ATP sing 111 n n C6 N1 ATP doub 112 n y N6 HN61 ATP sing 113 n n N6 HN62 ATP sing 114 n n N1 C2 ATP sing 115 n y C2 N3 ATP doub 116 n y C2 H2 ATP sing 117 n n N3 C4 ATP sing 118 n y # _atom_sites.entry_id 3W5O _atom_sites.fract_transf_matrix[1][1] 0.014643 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001045 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009582 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008352 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ATP A 1 701 1 ATP ATP . D 3 SO4 A 1 702 1 SO4 SO4 . E 3 SO4 A 1 703 2 SO4 SO4 . F 3 SO4 A 1 704 4 SO4 SO4 . G 3 SO4 A 1 705 5 SO4 SO4 . H 3 SO4 A 1 706 6 SO4 SO4 . I 3 SO4 A 1 707 7 SO4 SO4 . J 3 SO4 A 1 708 10 SO4 SO4 . K 3 SO4 A 1 709 11 SO4 SO4 . L 3 SO4 A 1 710 12 SO4 SO4 . M 3 SO4 A 1 711 15 SO4 SO4 . N 3 SO4 A 1 712 16 SO4 SO4 . O 3 SO4 A 1 713 17 SO4 SO4 . P 3 SO4 A 1 714 18 SO4 SO4 . Q 2 ATP B 1 701 1 ATP ATP . R 3 SO4 B 1 702 3 SO4 SO4 . S 3 SO4 B 1 703 8 SO4 SO4 . T 3 SO4 B 1 704 9 SO4 SO4 . U 3 SO4 B 1 705 13 SO4 SO4 . V 3 SO4 B 1 706 14 SO4 SO4 . W 3 SO4 B 1 707 19 SO4 SO4 . X 3 SO4 B 1 708 20 SO4 SO4 . Y 3 SO4 B 1 709 21 SO4 SO4 . Z 3 SO4 B 1 710 22 SO4 SO4 . AA 3 SO4 B 1 711 23 SO4 SO4 . BA 3 SO4 B 1 712 24 SO4 SO4 . CA 4 HOH A 1 801 1 HOH HOH . CA 4 HOH A 2 802 4 HOH HOH . CA 4 HOH A 3 803 5 HOH HOH . CA 4 HOH A 4 804 6 HOH HOH . CA 4 HOH A 5 805 7 HOH HOH . CA 4 HOH A 6 806 8 HOH HOH . CA 4 HOH A 7 807 9 HOH HOH . CA 4 HOH A 8 808 10 HOH HOH . CA 4 HOH A 9 809 11 HOH HOH . CA 4 HOH A 10 810 13 HOH HOH . CA 4 HOH A 11 811 14 HOH HOH . CA 4 HOH A 12 812 21 HOH HOH . CA 4 HOH A 13 813 23 HOH HOH . CA 4 HOH A 14 814 24 HOH HOH . CA 4 HOH A 15 815 25 HOH HOH . CA 4 HOH A 16 816 26 HOH HOH . CA 4 HOH A 17 817 27 HOH HOH . CA 4 HOH A 18 818 28 HOH HOH . DA 4 HOH B 1 801 2 HOH HOH . DA 4 HOH B 2 802 3 HOH HOH . DA 4 HOH B 3 803 12 HOH HOH . DA 4 HOH B 4 804 15 HOH HOH . DA 4 HOH B 5 805 16 HOH HOH . DA 4 HOH B 6 806 17 HOH HOH . DA 4 HOH B 7 807 18 HOH HOH . DA 4 HOH B 8 808 19 HOH HOH . DA 4 HOH B 9 809 20 HOH HOH . DA 4 HOH B 10 810 22 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . C 2 -16.432 24.868 7.391 1 130.36 ? PG ATP 701 A 1 HETATM 2 O O1G ATP . . . C 2 -17.233 24.208 8.488 1 113.94 ? O1G ATP 701 A 1 HETATM 3 O O2G ATP . . . C 2 -15.922 26.255 7.698 1 133.92 ? O2G ATP 701 A 1 HETATM 4 O O3G ATP . . . C 2 -16.947 24.707 5.974 1 129.74 ? O3G ATP 701 A 1 HETATM 5 P PB ATP . . . C 2 -14.231 23.724 8.711 1 68 ? PB ATP 701 A 1 HETATM 6 O O1B ATP . . . C 2 -14.373 22.252 8.989 1 66.42 ? O1B ATP 701 A 1 HETATM 7 O O2B ATP . . . C 2 -14.637 24.729 9.759 1 71.81 ? O2B ATP 701 A 1 HETATM 8 O O3B ATP . . . C 2 -15.081 24.022 7.393 1 19.73 ? O3B ATP 701 A 1 HETATM 9 P PA ATP . . . C 2 -12.125 24.036 6.657 1 97.57 ? PA ATP 701 A 1 HETATM 10 O O1A ATP . . . C 2 -13.191 23.703 5.635 1 96.34 ? O1A ATP 701 A 1 HETATM 11 O O2A ATP . . . C 2 -10.919 23.133 6.673 1 111.43 ? O2A ATP 701 A 1 HETATM 12 O O3A ATP . . . C 2 -12.74 24.118 8.174 1 225.89 ? O3A ATP 701 A 1 HETATM 13 O O5' ATP . . . C 2 -11.61 25.541 6.327 1 73.55 ? O5' ATP 701 A 1 HETATM 14 C C5' ATP . . . C 2 -12.538 26.648 6.367 1 94.69 ? C5' ATP 701 A 1 HETATM 15 C C4' ATP . . . C 2 -12.767 27.542 5.14 1 96.4 ? C4' ATP 701 A 1 HETATM 16 O O4' ATP . . . C 2 -13.682 28.551 5.596 1 99.94 ? O4' ATP 701 A 1 HETATM 17 C C3' ATP . . . C 2 -11.554 28.259 4.546 1 87.27 ? C3' ATP 701 A 1 HETATM 18 O O3' ATP . . . C 2 -11.206 27.796 3.225 1 71.42 ? O3' ATP 701 A 1 HETATM 19 C C2' ATP . . . C 2 -11.969 29.713 4.448 1 99.16 ? C2' ATP 701 A 1 HETATM 20 O O2' ATP . . . C 2 -12.172 30.045 3.07 1 105.58 ? O2' ATP 701 A 1 HETATM 21 C C1' ATP . . . C 2 -13.293 29.868 5.188 1 100.07 ? C1' ATP 701 A 1 HETATM 22 N N9 ATP . . . C 2 -13.161 30.761 6.385 1 77.48 ? N9 ATP 701 A 1 HETATM 23 C C8 ATP . . . C 2 -13.701 30.52 7.592 1 57.52 ? C8 ATP 701 A 1 HETATM 24 N N7 ATP . . . C 2 -13.414 31.51 8.476 1 58.96 ? N7 ATP 701 A 1 HETATM 25 C C5 ATP . . . C 2 -12.666 32.439 7.84 1 70.18 ? C5 ATP 701 A 1 HETATM 26 C C6 ATP . . . C 2 -12.016 33.751 8.192 1 64.38 ? C6 ATP 701 A 1 HETATM 27 N N6 ATP . . . C 2 -12.088 34.31 9.432 1 49.04 ? N6 ATP 701 A 1 HETATM 28 N N1 ATP . . . C 2 -11.328 34.391 7.218 1 62.72 ? N1 ATP 701 A 1 HETATM 29 C C2 ATP . . . C 2 -11.232 33.86 5.979 1 80.02 ? C2 ATP 701 A 1 HETATM 30 N N3 ATP . . . C 2 -11.786 32.69 5.588 1 80.95 ? N3 ATP 701 A 1 HETATM 31 C C4 ATP . . . C 2 -12.513 31.937 6.455 1 77.71 ? C4 ATP 701 A 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 248 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 31 #