data_3W5O
#
_model_server_result.job_id            U8C0M5-lmVGlJiPBo6Jx0Q 
_model_server_result.datetime_utc      '2024-11-04 20:09:10' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3w5o 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"Q","auth_seq_id":701}' 
#
_entry.id    3W5O 
#
_exptl.entry_id    3W5O 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              507.181 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-TRIPHOSPHATE" 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          94.08 
_cell.angle_gamma         90 
_cell.entry_id            3W5O 
_cell.length_a            68.29 
_cell.length_b            104.36 
_cell.length_c            120.04 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3W5O 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,G,H,I,J,K,L,M,N,O,P,CA 1 1 
B,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,DA 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 Q N N 
#
_chem_comp.formula           'C10 H16 N5 O13 P3' 
_chem_comp.formula_weight    507.181 
_chem_comp.id                ATP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "ADENOSINE-5'-TRIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G ATP doub 70 n n 
PG O2G ATP sing 71 n n 
PG O3G ATP sing 72 n n 
PG O3B ATP sing 73 n n 
O2G HOG2 ATP sing 74 n n 
O3G HOG3 ATP sing 75 n n 
PB O1B ATP doub 76 n n 
PB O2B ATP sing 77 n n 
PB O3B ATP sing 78 n n 
PB O3A ATP sing 79 n n 
O2B HOB2 ATP sing 80 n n 
PA O1A ATP doub 81 n n 
PA O2A ATP sing 82 n n 
PA O3A ATP sing 83 n n 
PA O5' ATP sing 84 n n 
O2A HOA2 ATP sing 85 n n 
O5' C5' ATP sing 86 n n 
C5' C4' ATP sing 87 n n 
C5' "H5'1" ATP sing 88 n n 
C5' "H5'2" ATP sing 89 n n 
C4' O4' ATP sing 90 n n 
C4' C3' ATP sing 91 n n 
C4' H4' ATP sing 92 n n 
O4' C1' ATP sing 93 n n 
C3' O3' ATP sing 94 n n 
C3' C2' ATP sing 95 n n 
C3' H3' ATP sing 96 n n 
O3' HO3' ATP sing 97 n n 
C2' O2' ATP sing 98 n n 
C2' C1' ATP sing 99 n n 
C2' H2' ATP sing 100 n n 
O2' HO2' ATP sing 101 n n 
C1' N9 ATP sing 102 n n 
C1' H1' ATP sing 103 n n 
N9 C8 ATP sing 104 n y 
N9 C4 ATP sing 105 n y 
C8 N7 ATP doub 106 n y 
C8 H8 ATP sing 107 n n 
N7 C5 ATP sing 108 n y 
C5 C6 ATP sing 109 n y 
C5 C4 ATP doub 110 n y 
C6 N6 ATP sing 111 n n 
C6 N1 ATP doub 112 n y 
N6 HN61 ATP sing 113 n n 
N6 HN62 ATP sing 114 n n 
N1 C2 ATP sing 115 n y 
C2 N3 ATP doub 116 n y 
C2 H2 ATP sing 117 n n 
N3 C4 ATP sing 118 n y 
#
_atom_sites.entry_id                     3W5O 
_atom_sites.fract_transf_matrix[1][1]    0.014643 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.001045 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009582 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008352 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 ATP A 1 701 1 ATP ATP . 
D 3 SO4 A 1 702 1 SO4 SO4 . 
E 3 SO4 A 1 703 2 SO4 SO4 . 
F 3 SO4 A 1 704 4 SO4 SO4 . 
G 3 SO4 A 1 705 5 SO4 SO4 . 
H 3 SO4 A 1 706 6 SO4 SO4 . 
I 3 SO4 A 1 707 7 SO4 SO4 . 
J 3 SO4 A 1 708 10 SO4 SO4 . 
K 3 SO4 A 1 709 11 SO4 SO4 . 
L 3 SO4 A 1 710 12 SO4 SO4 . 
M 3 SO4 A 1 711 15 SO4 SO4 . 
N 3 SO4 A 1 712 16 SO4 SO4 . 
O 3 SO4 A 1 713 17 SO4 SO4 . 
P 3 SO4 A 1 714 18 SO4 SO4 . 
Q 2 ATP B 1 701 1 ATP ATP . 
R 3 SO4 B 1 702 3 SO4 SO4 . 
S 3 SO4 B 1 703 8 SO4 SO4 . 
T 3 SO4 B 1 704 9 SO4 SO4 . 
U 3 SO4 B 1 705 13 SO4 SO4 . 
V 3 SO4 B 1 706 14 SO4 SO4 . 
W 3 SO4 B 1 707 19 SO4 SO4 . 
X 3 SO4 B 1 708 20 SO4 SO4 . 
Y 3 SO4 B 1 709 21 SO4 SO4 . 
Z 3 SO4 B 1 710 22 SO4 SO4 . 
AA 3 SO4 B 1 711 23 SO4 SO4 . 
BA 3 SO4 B 1 712 24 SO4 SO4 . 
CA 4 HOH A 1 801 1 HOH HOH . 
CA 4 HOH A 2 802 4 HOH HOH . 
CA 4 HOH A 3 803 5 HOH HOH . 
CA 4 HOH A 4 804 6 HOH HOH . 
CA 4 HOH A 5 805 7 HOH HOH . 
CA 4 HOH A 6 806 8 HOH HOH . 
CA 4 HOH A 7 807 9 HOH HOH . 
CA 4 HOH A 8 808 10 HOH HOH . 
CA 4 HOH A 9 809 11 HOH HOH . 
CA 4 HOH A 10 810 13 HOH HOH . 
CA 4 HOH A 11 811 14 HOH HOH . 
CA 4 HOH A 12 812 21 HOH HOH . 
CA 4 HOH A 13 813 23 HOH HOH . 
CA 4 HOH A 14 814 24 HOH HOH . 
CA 4 HOH A 15 815 25 HOH HOH . 
CA 4 HOH A 16 816 26 HOH HOH . 
CA 4 HOH A 17 817 27 HOH HOH . 
CA 4 HOH A 18 818 28 HOH HOH . 
DA 4 HOH B 1 801 2 HOH HOH . 
DA 4 HOH B 2 802 3 HOH HOH . 
DA 4 HOH B 3 803 12 HOH HOH . 
DA 4 HOH B 4 804 15 HOH HOH . 
DA 4 HOH B 5 805 16 HOH HOH . 
DA 4 HOH B 6 806 17 HOH HOH . 
DA 4 HOH B 7 807 18 HOH HOH . 
DA 4 HOH B 8 808 19 HOH HOH . 
DA 4 HOH B 9 809 20 HOH HOH . 
DA 4 HOH B 10 810 22 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG ATP . . . Q 2 -10.372 -32.658 -65.295 1 119.39 ? PG ATP 701 B 1 
HETATM 2 O O1G ATP . . . Q 2 -10.924 -31.992 -66.533 1 109.12 ? O1G ATP 701 B 1 
HETATM 3 O O2G ATP . . . Q 2 -9.814 -34.047 -65.487 1 127.03 ? O2G ATP 701 B 1 
HETATM 4 O O3G ATP . . . Q 2 -11.19 -32.513 -64.03 1 117.89 ? O3G ATP 701 B 1 
HETATM 5 P PB ATP . . . Q 2 -7.955 -31.606 -66.113 1 103.59 ? PB ATP 701 B 1 
HETATM 6 O O1B ATP . . . Q 2 -7.923 -30.136 -66.452 1 94.53 ? O1B ATP 701 B 1 
HETATM 7 O O2B ATP . . . Q 2 -8.254 -32.629 -67.184 1 106.2 ? O2B ATP 701 B 1 
HETATM 8 O O3B ATP . . . Q 2 -9.058 -31.798 -65.005 1 20.01 ? O3B ATP 701 B 1 
HETATM 9 P PA ATP . . . Q 2 -6.374 -32.125 -63.705 1 106.78 ? PA ATP 701 B 1 
HETATM 10 O O1A ATP . . . Q 2 -7.648 -31.852 -62.936 1 114.52 ? O1A ATP 701 B 1 
HETATM 11 O O2A ATP . . . Q 2 -5.183 -31.273 -63.34 1 99.21 ? O2A ATP 701 B 1 
HETATM 12 O O3A ATP . . . Q 2 -6.622 -32.085 -65.316 1 218.72 ? O3A ATP 701 B 1 
HETATM 13 O O5' ATP . . . Q 2 -5.953 -33.663 -63.403 1 116.89 ? O5' ATP 701 B 1 
HETATM 14 C C5' ATP . . . Q 2 -6.899 -34.743 -63.505 1 118.1 ? C5' ATP 701 B 1 
HETATM 15 C C4' ATP . . . Q 2 -7.306 -35.453 -62.201 1 109.21 ? C4' ATP 701 B 1 
HETATM 16 O O4' ATP . . . Q 2 -8.217 -36.499 -62.58 1 106.93 ? O4' ATP 701 B 1 
HETATM 17 C C3' ATP . . . Q 2 -6.168 -36.092 -61.4 1 95.4 ? C3' ATP 701 B 1 
HETATM 18 O O3' ATP . . . Q 2 -6.087 -35.662 -60.025 1 65.09 ? O3' ATP 701 B 1 
HETATM 19 C C2' ATP . . . Q 2 -6.47 -37.573 -61.388 1 104.57 ? C2' ATP 701 B 1 
HETATM 20 O O2' ATP . . . Q 2 -6.557 -37.995 -60.024 1 110.92 ? O2' ATP 701 B 1 
HETATM 21 C C1' ATP . . . Q 2 -7.788 -37.79 -62.129 1 103.46 ? C1' ATP 701 B 1 
HETATM 22 N N9 ATP . . . Q 2 -7.511 -38.686 -63.293 1 92.37 ? N9 ATP 701 B 1 
HETATM 23 C C8 ATP . . . Q 2 -7.803 -38.438 -64.59 1 79.12 ? C8 ATP 701 B 1 
HETATM 24 N N7 ATP . . . Q 2 -7.402 -39.458 -65.403 1 64.76 ? N7 ATP 701 B 1 
HETATM 25 C C5 ATP . . . Q 2 -6.828 -40.396 -64.617 1 75.14 ? C5 ATP 701 B 1 
HETATM 26 C C6 ATP . . . Q 2 -6.19 -41.731 -64.814 1 79.98 ? C6 ATP 701 B 1 
HETATM 27 N N6 ATP . . . Q 2 -6.075 -42.277 -66.053 1 84.67 ? N6 ATP 701 B 1 
HETATM 28 N N1 ATP . . . Q 2 -5.729 -42.392 -63.719 1 71.52 ? N1 ATP 701 B 1 
HETATM 29 C C2 ATP . . . Q 2 -5.83 -41.86 -62.488 1 72.54 ? C2 ATP 701 B 1 
HETATM 30 N N3 ATP . . . Q 2 -6.393 -40.659 -62.233 1 77.12 ? N3 ATP 701 B 1 
HETATM 31 C C4 ATP . . . Q 2 -6.908 -39.887 -63.231 1 85.32 ? C4 ATP 701 B 1 
#
_model_server_stats.io_time_ms              17 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    29 
_model_server_stats.query_time_ms           234 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           31 
#