data_3W5P # _model_server_result.job_id jfAvGcR9mDsdPAjGteMnNw _model_server_result.datetime_utc '2024-12-05 06:03:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3w5p # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":500}' # _entry.id 3W5P # _exptl.entry_id 3W5P _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 376.573 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(3beta,5beta,14beta,17alpha)-3-hydroxycholan-24-oic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 96.79 _cell.angle_gamma 90 _cell.entry_id 3W5P _cell.length_a 154.509 _cell.length_b 42.371 _cell.length_c 41.649 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3W5P _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C24 H40 O3' _chem_comp.formula_weight 376.573 _chem_comp.id 4OA _chem_comp.mon_nstd_flag . _chem_comp.name '(3beta,5beta,14beta,17alpha)-3-hydroxycholan-24-oic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'Lithocholic acid' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C2 C1 4OA sing 1 n n C1 C10 4OA sing 2 n n C1 H1 4OA sing 3 n n C1 H1A 4OA sing 4 n n C5 C10 4OA sing 5 n n C10 C9 4OA sing 6 n n C10 C19 4OA sing 7 n n C9 C11 4OA sing 8 n n C11 C12 4OA sing 9 n n C11 H11 4OA sing 10 n n C11 H11A 4OA sing 11 n n C12 C13 4OA sing 12 n n C12 H12 4OA sing 13 n n C12 H12A 4OA sing 14 n n C14 C13 4OA sing 15 n n C13 C17 4OA sing 16 n n C13 C18 4OA sing 17 n n C8 C14 4OA sing 18 n n C14 C15 4OA sing 19 n n C14 H14 4OA sing 20 n n C15 C16 4OA sing 21 n n C15 H15 4OA sing 22 n n C15 H15A 4OA sing 23 n n C17 C16 4OA sing 24 n n C16 H16 4OA sing 25 n n C16 H16A 4OA sing 26 n n C17 C20 4OA sing 27 n n C17 H17 4OA sing 28 n n C18 H18 4OA sing 29 n n C18 H18A 4OA sing 30 n n C18 H18B 4OA sing 31 n n C19 H19 4OA sing 32 n n C19 H19A 4OA sing 33 n n C19 H19B 4OA sing 34 n n O1B C3 4OA sing 35 n n O1B HO1B 4OA sing 36 n n C3 C2 4OA sing 37 n n C2 H2 4OA sing 38 n n C2 H2A 4OA sing 39 n n C21 C20 4OA sing 40 n n C20 C22 4OA sing 41 n n C20 H20 4OA sing 42 n n C21 H21 4OA sing 43 n n C21 H21A 4OA sing 44 n n C21 H21B 4OA sing 45 n n C23 C22 4OA sing 46 n n C22 H22 4OA sing 47 n n C22 H22A 4OA sing 48 n n C23 C24 4OA sing 49 n n C23 H23 4OA sing 50 n n C23 H23A 4OA sing 51 n n O4A C24 4OA doub 52 n n C24 O4 4OA sing 53 n n C3 C4 4OA sing 54 n n C3 H3 4OA sing 55 n n C4 C5 4OA sing 56 n n C4 H4 4OA sing 57 n n C4 H4A 4OA sing 58 n n O4 HO4 4OA sing 59 n n C5 C6 4OA sing 60 n n C5 H5 4OA sing 61 n n C6 C7 4OA sing 62 n n C6 H6 4OA sing 63 n n C6 H6A 4OA sing 64 n n C7 C8 4OA sing 65 n n C7 H7 4OA sing 66 n n C7 H7A 4OA sing 67 n n C9 C8 4OA sing 68 n n C8 H8 4OA sing 69 n n C9 H9 4OA sing 70 n n # _atom_sites.entry_id 3W5P _atom_sites.fract_transf_matrix[1][1] 0.006472 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00077 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.023601 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.02418 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 4OA A 1 500 500 4OA LCA . D 4 HOH A 1 701 701 HOH HOH . D 4 HOH A 2 702 702 HOH HOH . D 4 HOH A 3 703 703 HOH HOH . D 4 HOH A 4 704 704 HOH HOH . D 4 HOH A 5 705 705 HOH HOH . D 4 HOH A 6 706 706 HOH HOH . D 4 HOH A 7 707 707 HOH HOH . D 4 HOH A 8 708 708 HOH HOH . D 4 HOH A 9 709 710 HOH HOH . D 4 HOH A 10 710 711 HOH HOH . D 4 HOH A 11 711 712 HOH HOH . D 4 HOH A 12 712 713 HOH HOH . D 4 HOH A 13 713 714 HOH HOH . D 4 HOH A 14 714 715 HOH HOH . D 4 HOH A 15 715 716 HOH HOH . D 4 HOH A 16 716 717 HOH HOH . D 4 HOH A 17 717 718 HOH HOH . D 4 HOH A 18 718 719 HOH HOH . D 4 HOH A 19 719 720 HOH HOH . D 4 HOH A 20 720 722 HOH HOH . D 4 HOH A 21 721 723 HOH HOH . D 4 HOH A 22 722 724 HOH HOH . D 4 HOH A 23 723 725 HOH HOH . D 4 HOH A 24 724 726 HOH HOH . D 4 HOH A 25 725 727 HOH HOH . D 4 HOH A 26 726 728 HOH HOH . D 4 HOH A 27 727 729 HOH HOH . D 4 HOH A 28 728 730 HOH HOH . D 4 HOH A 29 729 732 HOH HOH . D 4 HOH A 30 730 733 HOH HOH . D 4 HOH A 31 731 734 HOH HOH . D 4 HOH A 32 732 736 HOH HOH . D 4 HOH A 33 733 737 HOH HOH . D 4 HOH A 34 734 738 HOH HOH . D 4 HOH A 35 735 739 HOH HOH . D 4 HOH A 36 736 740 HOH HOH . D 4 HOH A 37 737 741 HOH HOH . D 4 HOH A 38 738 742 HOH HOH . D 4 HOH A 39 739 743 HOH HOH . D 4 HOH A 40 740 744 HOH HOH . D 4 HOH A 41 741 745 HOH HOH . D 4 HOH A 42 742 746 HOH HOH . D 4 HOH A 43 743 747 HOH HOH . D 4 HOH A 44 744 748 HOH HOH . D 4 HOH A 45 745 749 HOH HOH . D 4 HOH A 46 746 750 HOH HOH . D 4 HOH A 47 747 751 HOH HOH . D 4 HOH A 48 748 752 HOH HOH . D 4 HOH A 49 749 753 HOH HOH . D 4 HOH A 50 750 754 HOH HOH . D 4 HOH A 51 751 755 HOH HOH . D 4 HOH A 52 752 756 HOH HOH . D 4 HOH A 53 753 757 HOH HOH . D 4 HOH A 54 754 758 HOH HOH . D 4 HOH A 55 755 759 HOH HOH . D 4 HOH A 56 756 760 HOH HOH . D 4 HOH A 57 757 761 HOH HOH . D 4 HOH A 58 758 762 HOH HOH . D 4 HOH A 59 759 763 HOH HOH . D 4 HOH A 60 760 764 HOH HOH . D 4 HOH A 61 761 765 HOH HOH . D 4 HOH A 62 762 766 HOH HOH . D 4 HOH A 63 763 767 HOH HOH . D 4 HOH A 64 764 768 HOH HOH . D 4 HOH A 65 765 769 HOH HOH . D 4 HOH A 66 766 770 HOH HOH . D 4 HOH A 67 767 771 HOH HOH . D 4 HOH A 68 768 772 HOH HOH . D 4 HOH A 69 769 773 HOH HOH . D 4 HOH A 70 770 774 HOH HOH . D 4 HOH A 71 771 775 HOH HOH . D 4 HOH A 72 772 776 HOH HOH . D 4 HOH A 73 773 777 HOH HOH . D 4 HOH A 74 774 778 HOH HOH . D 4 HOH A 75 775 779 HOH HOH . D 4 HOH A 76 776 781 HOH HOH . D 4 HOH A 77 777 782 HOH HOH . D 4 HOH A 78 778 783 HOH HOH . D 4 HOH A 79 779 784 HOH HOH . D 4 HOH A 80 780 785 HOH HOH . D 4 HOH A 81 781 786 HOH HOH . D 4 HOH A 82 782 787 HOH HOH . D 4 HOH A 83 783 788 HOH HOH . D 4 HOH A 84 784 789 HOH HOH . D 4 HOH A 85 785 792 HOH HOH . D 4 HOH A 86 786 793 HOH HOH . D 4 HOH A 87 787 795 HOH HOH . D 4 HOH A 88 788 796 HOH HOH . D 4 HOH A 89 789 798 HOH HOH . D 4 HOH A 90 790 801 HOH HOH . D 4 HOH A 91 791 802 HOH HOH . D 4 HOH A 92 792 804 HOH HOH . D 4 HOH A 93 793 805 HOH HOH . D 4 HOH A 94 794 806 HOH HOH . D 4 HOH A 95 795 807 HOH HOH . D 4 HOH A 96 796 808 HOH HOH . D 4 HOH A 97 797 810 HOH HOH . D 4 HOH A 98 798 811 HOH HOH . D 4 HOH A 99 799 814 HOH HOH . D 4 HOH A 100 800 817 HOH HOH . D 4 HOH A 101 801 820 HOH HOH . D 4 HOH A 102 802 821 HOH HOH . D 4 HOH A 103 803 822 HOH HOH . E 4 HOH C 1 701 721 HOH HOH . E 4 HOH C 2 702 780 HOH HOH . E 4 HOH C 3 703 790 HOH HOH . E 4 HOH C 4 704 799 HOH HOH . E 4 HOH C 5 705 800 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 4OA . . . C 3 10.367 2.117 28.694 1 32.59 ? C1 4OA 500 A 1 HETATM 2 C C10 4OA . . . C 3 11.893 1.762 28.259 1 31.8 ? C10 4OA 500 A 1 HETATM 3 C C11 4OA . . . C 3 12.005 4.213 27.107 1 29.78 ? C11 4OA 500 A 1 HETATM 4 C C12 4OA . . . C 3 12.253 5.076 25.816 1 29.78 ? C12 4OA 500 A 1 HETATM 5 C C13 4OA . . . C 3 13.71 4.882 25.231 1 30.13 ? C13 4OA 500 A 1 HETATM 6 C C14 4OA . . . C 3 14.016 3.32 25.092 1 29.59 ? C14 4OA 500 A 1 HETATM 7 C C15 4OA . . . C 3 15.503 3.36 24.49 1 31.48 ? C15 4OA 500 A 1 HETATM 8 C C16 4OA . . . C 3 15.204 4.254 23.336 1 29.78 ? C16 4OA 500 A 1 HETATM 9 C C17 4OA . . . C 3 14.011 5.271 23.727 1 29.47 ? C17 4OA 500 A 1 HETATM 10 C C18 4OA . . . C 3 14.756 5.608 26.313 1 31.96 ? C18 4OA 500 A 1 HETATM 11 C C19 4OA . . . C 3 12.561 2.261 29.462 1 32.35 ? C19 4OA 500 A 1 HETATM 12 O O1B 4OA . . . C 3 8.74 -0.446 26.171 1 36.44 ? O1B 4OA 500 A 1 HETATM 13 C C2 4OA . . . C 3 9.249 1.532 27.75 1 34.88 ? C2 4OA 500 A 1 HETATM 14 C C20 4OA . . . C 3 14.424 6.818 23.418 1 28.47 ? C20 4OA 500 A 1 HETATM 15 C C21 4OA . . . C 3 13.193 7.802 23.806 1 26.29 ? C21 4OA 500 A 1 HETATM 16 C C22 4OA . . . C 3 14.724 6.908 21.928 1 31.03 ? C22 4OA 500 A 1 HETATM 17 C C23 4OA . . . C 3 15.177 8.257 21.329 1 30.59 ? C23 4OA 500 A 1 HETATM 18 C C24 4OA . . . C 3 15.517 8.194 19.859 1 31.5 ? C24 4OA 500 A 1 HETATM 19 C C3 4OA . . . C 3 9.435 0.002 27.324 1 35.77 ? C3 4OA 500 A 1 HETATM 20 C C4 4OA . . . C 3 10.981 -0.292 26.794 1 34.98 ? C4 4OA 500 A 1 HETATM 21 O O4 4OA . . . C 3 16.325 9.043 19.443 1 28.59 ? O4 4OA 500 A 1 HETATM 22 O O4A 4OA . . . C 3 15.025 7.284 19.11 1 30.74 ? O4A 4OA 500 A 1 HETATM 23 C C5 4OA . . . C 3 12.154 0.178 27.888 1 32.32 ? C5 4OA 500 A 1 HETATM 24 C C6 4OA . . . C 3 13.711 -0.041 27.397 1 30.88 ? C6 4OA 500 A 1 HETATM 25 C C7 4OA . . . C 3 14.055 0.889 26.11 1 29.65 ? C7 4OA 500 A 1 HETATM 26 C C8 4OA . . . C 3 13.803 2.44 26.409 1 31.22 ? C8 4OA 500 A 1 HETATM 27 C C9 4OA . . . C 3 12.257 2.68 26.939 1 31.76 ? C9 4OA 500 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 25 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 270 _model_server_stats.encode_time_ms 15 _model_server_stats.element_count 27 #