data_3W5Q
#
_model_server_result.job_id            iwNPACr58T8U2s8FWPaNwg 
_model_server_result.datetime_utc      '2024-10-12 16:33:21' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3w5q 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":500}' 
#
_entry.id    3W5Q 
#
_exptl.entry_id    3W5Q 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              374.557 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(5beta,9beta)-3-oxocholan-24-oic acid' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          96.38 
_cell.angle_gamma         90 
_cell.entry_id            3W5Q 
_cell.length_a            153.799 
_cell.length_b            42.339 
_cell.length_c            41.546 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3W5Q 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C24 H38 O3' 
_chem_comp.formula_weight    374.557 
_chem_comp.id                3KL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(5beta,9beta)-3-oxocholan-24-oic acid' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     '3-keto-lithocholic acid' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
OT2 C24 3KL doub 1 n n 
OT1 C24 3KL sing 2 n n 
C24 C23 3KL sing 3 n n 
C23 C22 3KL sing 4 n n 
C22 C20 3KL sing 5 n n 
C20 C21 3KL sing 6 n n 
C20 C17 3KL sing 7 n n 
C16 C17 3KL sing 8 n n 
C16 C15 3KL sing 9 n n 
C17 C13 3KL sing 10 n n 
C15 C14 3KL sing 11 n n 
C14 C13 3KL sing 12 n n 
C14 C8 3KL sing 13 n n 
C13 C12 3KL sing 14 n n 
C13 C18 3KL sing 15 n n 
C12 C11 3KL sing 16 n n 
C7 C8 3KL sing 17 n n 
C7 C6 3KL sing 18 n n 
C8 C9 3KL sing 19 n n 
C4 C3 3KL sing 20 n n 
C4 C5 3KL sing 21 n n 
O3 C3 3KL doub 22 n n 
C3 C2 3KL sing 23 n n 
C9 C11 3KL sing 24 n n 
C9 C10 3KL sing 25 n n 
C2 C1 3KL sing 26 n n 
C6 C5 3KL sing 27 n n 
C5 C10 3KL sing 28 n n 
C10 C1 3KL sing 29 n n 
C10 C19 3KL sing 30 n n 
C2 H1 3KL sing 31 n n 
C2 H2 3KL sing 32 n n 
C4 H3 3KL sing 33 n n 
C4 H4 3KL sing 34 n n 
C5 H5 3KL sing 35 n n 
C6 H6 3KL sing 36 n n 
C6 H7 3KL sing 37 n n 
C1 H8 3KL sing 38 n n 
C1 H9 3KL sing 39 n n 
C7 H10 3KL sing 40 n n 
C7 H11 3KL sing 41 n n 
C8 H12 3KL sing 42 n n 
C9 H13 3KL sing 43 n n 
C11 H14 3KL sing 44 n n 
C11 H15 3KL sing 45 n n 
C12 H16 3KL sing 46 n n 
C12 H17 3KL sing 47 n n 
C14 H18 3KL sing 48 n n 
C15 H19 3KL sing 49 n n 
C15 H20 3KL sing 50 n n 
C16 H21 3KL sing 51 n n 
C16 H22 3KL sing 52 n n 
C17 H23 3KL sing 53 n n 
C18 H24 3KL sing 54 n n 
C18 H25 3KL sing 55 n n 
C18 H26 3KL sing 56 n n 
C19 H27 3KL sing 57 n n 
C19 H28 3KL sing 58 n n 
C19 H29 3KL sing 59 n n 
C20 H30 3KL sing 60 n n 
C21 H31 3KL sing 61 n n 
C21 H32 3KL sing 62 n n 
C21 H33 3KL sing 63 n n 
C22 H34 3KL sing 64 n n 
C22 H35 3KL sing 65 n n 
C23 H36 3KL sing 66 n n 
C23 H37 3KL sing 67 n n 
OT1 H38 3KL sing 68 n n 
#
_atom_sites.entry_id                     3W5Q 
_atom_sites.fract_transf_matrix[1][1]    0.006502 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000726 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.023619 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.024219 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 3KL A 1 500 500 3KL KET . 
D 4 HOH A 1 701 701 HOH HOH . 
D 4 HOH A 2 702 702 HOH HOH . 
D 4 HOH A 3 703 703 HOH HOH . 
D 4 HOH A 4 704 704 HOH HOH . 
D 4 HOH A 5 705 705 HOH HOH . 
D 4 HOH A 6 706 706 HOH HOH . 
D 4 HOH A 7 707 707 HOH HOH . 
D 4 HOH A 8 708 708 HOH HOH . 
D 4 HOH A 9 709 710 HOH HOH . 
D 4 HOH A 10 710 711 HOH HOH . 
D 4 HOH A 11 711 712 HOH HOH . 
D 4 HOH A 12 712 713 HOH HOH . 
D 4 HOH A 13 713 714 HOH HOH . 
D 4 HOH A 14 714 715 HOH HOH . 
D 4 HOH A 15 715 716 HOH HOH . 
D 4 HOH A 16 716 719 HOH HOH . 
D 4 HOH A 17 717 720 HOH HOH . 
D 4 HOH A 18 718 721 HOH HOH . 
D 4 HOH A 19 719 722 HOH HOH . 
D 4 HOH A 20 720 723 HOH HOH . 
D 4 HOH A 21 721 726 HOH HOH . 
D 4 HOH A 22 722 727 HOH HOH . 
D 4 HOH A 23 723 728 HOH HOH . 
D 4 HOH A 24 724 730 HOH HOH . 
D 4 HOH A 25 725 731 HOH HOH . 
D 4 HOH A 26 726 732 HOH HOH . 
D 4 HOH A 27 727 733 HOH HOH . 
D 4 HOH A 28 728 734 HOH HOH . 
D 4 HOH A 29 729 736 HOH HOH . 
D 4 HOH A 30 730 737 HOH HOH . 
D 4 HOH A 31 731 738 HOH HOH . 
D 4 HOH A 32 732 739 HOH HOH . 
D 4 HOH A 33 733 741 HOH HOH . 
D 4 HOH A 34 734 742 HOH HOH . 
D 4 HOH A 35 735 743 HOH HOH . 
D 4 HOH A 36 736 744 HOH HOH . 
D 4 HOH A 37 737 745 HOH HOH . 
D 4 HOH A 38 738 746 HOH HOH . 
D 4 HOH A 39 739 747 HOH HOH . 
D 4 HOH A 40 740 748 HOH HOH . 
D 4 HOH A 41 741 749 HOH HOH . 
D 4 HOH A 42 742 750 HOH HOH . 
D 4 HOH A 43 743 751 HOH HOH . 
D 4 HOH A 44 744 752 HOH HOH . 
D 4 HOH A 45 745 753 HOH HOH . 
D 4 HOH A 46 746 754 HOH HOH . 
D 4 HOH A 47 747 755 HOH HOH . 
D 4 HOH A 48 748 756 HOH HOH . 
D 4 HOH A 49 749 757 HOH HOH . 
D 4 HOH A 50 750 758 HOH HOH . 
D 4 HOH A 51 751 759 HOH HOH . 
D 4 HOH A 52 752 760 HOH HOH . 
D 4 HOH A 53 753 761 HOH HOH . 
D 4 HOH A 54 754 762 HOH HOH . 
D 4 HOH A 55 755 763 HOH HOH . 
D 4 HOH A 56 756 764 HOH HOH . 
D 4 HOH A 57 757 765 HOH HOH . 
D 4 HOH A 58 758 766 HOH HOH . 
D 4 HOH A 59 759 767 HOH HOH . 
D 4 HOH A 60 760 768 HOH HOH . 
D 4 HOH A 61 761 769 HOH HOH . 
D 4 HOH A 62 762 770 HOH HOH . 
D 4 HOH A 63 763 771 HOH HOH . 
D 4 HOH A 64 764 772 HOH HOH . 
D 4 HOH A 65 765 773 HOH HOH . 
D 4 HOH A 66 766 774 HOH HOH . 
D 4 HOH A 67 767 775 HOH HOH . 
D 4 HOH A 68 768 776 HOH HOH . 
D 4 HOH A 69 769 777 HOH HOH . 
D 4 HOH A 70 770 778 HOH HOH . 
D 4 HOH A 71 771 779 HOH HOH . 
D 4 HOH A 72 772 780 HOH HOH . 
D 4 HOH A 73 773 781 HOH HOH . 
D 4 HOH A 74 774 782 HOH HOH . 
D 4 HOH A 75 775 784 HOH HOH . 
D 4 HOH A 76 776 785 HOH HOH . 
D 4 HOH A 77 777 786 HOH HOH . 
D 4 HOH A 78 778 787 HOH HOH . 
D 4 HOH A 79 779 788 HOH HOH . 
D 4 HOH A 80 780 789 HOH HOH . 
D 4 HOH A 81 781 790 HOH HOH . 
D 4 HOH A 82 782 791 HOH HOH . 
D 4 HOH A 83 783 792 HOH HOH . 
D 4 HOH A 84 784 793 HOH HOH . 
D 4 HOH A 85 785 794 HOH HOH . 
D 4 HOH A 86 786 795 HOH HOH . 
D 4 HOH A 87 787 796 HOH HOH . 
D 4 HOH A 88 788 797 HOH HOH . 
D 4 HOH A 89 789 798 HOH HOH . 
D 4 HOH A 90 790 799 HOH HOH . 
D 4 HOH A 91 791 800 HOH HOH . 
D 4 HOH A 92 792 801 HOH HOH . 
D 4 HOH A 93 793 802 HOH HOH . 
D 4 HOH A 94 794 803 HOH HOH . 
D 4 HOH A 95 795 804 HOH HOH . 
D 4 HOH A 96 796 805 HOH HOH . 
D 4 HOH A 97 797 806 HOH HOH . 
D 4 HOH A 98 798 807 HOH HOH . 
D 4 HOH A 99 799 808 HOH HOH . 
D 4 HOH A 100 800 809 HOH HOH . 
D 4 HOH A 101 801 810 HOH HOH . 
D 4 HOH A 102 802 811 HOH HOH . 
D 4 HOH A 103 803 812 HOH HOH . 
D 4 HOH A 104 804 814 HOH HOH . 
D 4 HOH A 105 805 816 HOH HOH . 
E 4 HOH C 1 701 717 HOH HOH . 
E 4 HOH C 2 702 718 HOH HOH . 
E 4 HOH C 3 703 729 HOH HOH . 
E 4 HOH C 4 704 735 HOH HOH . 
E 4 HOH C 5 705 783 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C2 3KL . . . C 3 8.983 1.821 27.144 1 34.68 ? C2 3KL 500 A 1 
HETATM 2 C C3 3KL . . . C 3 9.193 0.267 26.837 1 34.39 ? C3 3KL 500 A 1 
HETATM 3 O O3 3KL . . . C 3 8.25 -0.544 26.815 1 38.32 ? O3 3KL 500 A 1 
HETATM 4 C C4 3KL . . . C 3 10.788 -0.085 26.549 1 34.04 ? C4 3KL 500 A 1 
HETATM 5 C C5 3KL . . . C 3 11.819 0.388 27.781 1 32.97 ? C5 3KL 500 A 1 
HETATM 6 C C6 3KL . . . C 3 13.414 0.181 27.446 1 32.39 ? C6 3KL 500 A 1 
HETATM 7 C C1 3KL . . . C 3 9.919 2.256 28.343 1 33.56 ? C1 3KL 500 A 1 
HETATM 8 C C7 3KL . . . C 3 13.859 1.076 26.167 1 31.86 ? C7 3KL 500 A 1 
HETATM 9 C C8 3KL . . . C 3 13.608 2.641 26.415 1 32.13 ? C8 3KL 500 A 1 
HETATM 10 C C9 3KL . . . C 3 12.042 2.891 26.871 1 34.09 ? C9 3KL 500 A 1 
HETATM 11 C C10 3KL . . . C 3 11.511 1.975 28.132 1 33.67 ? C10 3KL 500 A 1 
HETATM 12 C C11 3KL . . . C 3 11.758 4.422 26.96 1 33.21 ? C11 3KL 500 A 1 
HETATM 13 C C12 3KL . . . C 3 12.08 5.245 25.664 1 32.21 ? C12 3KL 500 A 1 
HETATM 14 C C13 3KL . . . C 3 13.571 5.044 25.16 1 30.95 ? C13 3KL 500 A 1 
HETATM 15 C C14 3KL . . . C 3 13.879 3.48 25.082 1 31.36 ? C14 3KL 500 A 1 
HETATM 16 C C15 3KL . . . C 3 15.392 3.489 24.535 1 31.52 ? C15 3KL 500 A 1 
HETATM 17 C C16 3KL . . . C 3 15.146 4.353 23.346 1 27.82 ? C16 3KL 500 A 1 
HETATM 18 C C17 3KL . . . C 3 13.946 5.393 23.662 1 30.94 ? C17 3KL 500 A 1 
HETATM 19 C C18 3KL . . . C 3 14.556 5.802 26.275 1 32.92 ? C18 3KL 500 A 1 
HETATM 20 C C19 3KL . . . C 3 12.112 2.395 29.418 1 34.32 ? C19 3KL 500 A 1 
HETATM 21 C C20 3KL . . . C 3 14.4 6.927 23.322 1 30.85 ? C20 3KL 500 A 1 
HETATM 22 C C21 3KL . . . C 3 13.189 7.946 23.638 1 28.53 ? C21 3KL 500 A 1 
HETATM 23 C C22 3KL . . . C 3 14.749 6.971 21.84 1 32.33 ? C22 3KL 500 A 1 
HETATM 24 C C23 3KL . . . C 3 15.239 8.291 21.206 1 33 ? C23 3KL 500 A 1 
HETATM 25 C C24 3KL . . . C 3 15.602 8.156 19.749 1 33.5 ? C24 3KL 500 A 1 
HETATM 26 O OT1 3KL . . . C 3 16.367 9.01 19.282 1 34.26 ? OT1 3KL 500 A 1 
HETATM 27 O OT2 3KL . . . C 3 15.166 7.183 19.059 1 34.46 ? OT2 3KL 500 A 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           280 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           27 
#