data_3W5U # _model_server_result.job_id 3xXmDaLanUMOMPbUjnZRqA _model_server_result.datetime_utc '2024-11-04 23:24:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3w5u # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"M","auth_seq_id":401}' # _entry.id 3W5U # _exptl.entry_id 3W5U _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 785.55 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN-ADENINE DINUCLEOTIDE' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 99.42 _cell.angle_gamma 90 _cell.entry_id 3W5U _cell.length_a 59.202 _cell.length_b 153.634 _cell.length_c 100.107 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3W5U _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? dimeric 2 author_defined_assembly 1 ? dimeric 2 author_defined_assembly 2 ? dimeric 2 author_defined_assembly 3 ? dimeric 2 author_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,I,J,Q 1 1 C,D,K,L,R 2 1 E,F,M,N,S,T 3 1 G,H,O,P,U 4 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 I N N ? 3 K N N ? 3 M N N ? 3 O N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 19 A CYS 19 1_555 B SG CYS 59 B CYS 59 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? disulf ? disulf2 C SG CYS 19 C CYS 19 1_555 D SG CYS 59 D CYS 59 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? disulf ? disulf3 E SG CYS 19 E CYS 19 1_555 F SG CYS 59 F CYS 59 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? disulf ? disulf4 G SG CYS 19 G CYS 19 1_555 H SG CYS 59 H CYS 59 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? metalc ? metalc1 B SG CYS 39 B CYS 39 1_555 J FE2 FES . B FES 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.328 ? metalc ? metalc2 B SG CYS 44 B CYS 44 1_555 J FE2 FES . B FES 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.145 ? metalc ? metalc3 B SG CYS 47 B CYS 47 1_555 J FE1 FES . B FES 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.205 ? metalc ? metalc4 B SG CYS 77 B CYS 77 1_555 J FE1 FES . B FES 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.159 ? metalc ? metalc5 D SG CYS 39 D CYS 39 1_555 L FE2 FES . D FES 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.282 ? metalc ? metalc6 D SG CYS 44 D CYS 44 1_555 L FE2 FES . D FES 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.226 ? metalc ? metalc7 D SG CYS 47 D CYS 47 1_555 L FE1 FES . D FES 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.247 ? metalc ? metalc8 D SG CYS 77 D CYS 77 1_555 L FE1 FES . D FES 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.18 ? metalc ? metalc9 F SG CYS 39 F CYS 39 1_555 N FE2 FES . F FES 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.339 ? metalc ? metalc10 F SG CYS 44 F CYS 44 1_555 N FE2 FES . F FES 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.23 ? metalc ? metalc11 F SG CYS 47 F CYS 47 1_555 N FE1 FES . F FES 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.071 ? metalc ? metalc12 F SG CYS 77 F CYS 77 1_555 N FE1 FES . F FES 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.255 ? metalc ? metalc13 H SG CYS 39 H CYS 39 1_555 P FE2 FES . H FES 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.248 ? metalc ? metalc14 H SG CYS 44 H CYS 44 1_555 P FE2 FES . H FES 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.215 ? metalc ? metalc15 H SG CYS 47 H CYS 47 1_555 P FE1 FES . H FES 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.116 ? metalc ? metalc16 H SG CYS 77 H CYS 77 1_555 P FE1 FES . H FES 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.346 ? # _chem_comp.formula 'C27 H33 N9 O15 P2' _chem_comp.formula_weight 785.55 _chem_comp.id FAD _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN-ADENINE DINUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A FAD doub 83 n n PA O2A FAD sing 84 n n PA O5B FAD sing 85 n n PA O3P FAD sing 86 n n O2A HOA2 FAD sing 87 n n O5B C5B FAD sing 88 n n C5B C4B FAD sing 89 n n C5B H51A FAD sing 90 n n C5B H52A FAD sing 91 n n C4B O4B FAD sing 92 n n C4B C3B FAD sing 93 n n C4B H4B FAD sing 94 n n O4B C1B FAD sing 95 n n C3B O3B FAD sing 96 n n C3B C2B FAD sing 97 n n C3B H3B FAD sing 98 n n O3B HO3A FAD sing 99 n n C2B O2B FAD sing 100 n n C2B C1B FAD sing 101 n n C2B H2B FAD sing 102 n n O2B HO2A FAD sing 103 n n C1B N9A FAD sing 104 n n C1B H1B FAD sing 105 n n N9A C8A FAD sing 106 n y N9A C4A FAD sing 107 n y C8A N7A FAD doub 108 n y C8A H8A FAD sing 109 n n N7A C5A FAD sing 110 n y C5A C6A FAD sing 111 n y C5A C4A FAD doub 112 n y C6A N6A FAD sing 113 n n C6A N1A FAD doub 114 n y N6A H61A FAD sing 115 n n N6A H62A FAD sing 116 n n N1A C2A FAD sing 117 n y C2A N3A FAD doub 118 n y C2A H2A FAD sing 119 n n N3A C4A FAD sing 120 n y N1 C2 FAD sing 121 n n N1 C10 FAD doub 122 n n C2 O2 FAD doub 123 n n C2 N3 FAD sing 124 n n N3 C4 FAD sing 125 n n N3 HN3 FAD sing 126 n n C4 O4 FAD doub 127 n n C4 C4X FAD sing 128 n n C4X N5 FAD doub 129 n n C4X C10 FAD sing 130 n n N5 C5X FAD sing 131 n n C5X C6 FAD doub 132 n y C5X C9A FAD sing 133 n y C6 C7 FAD sing 134 n y C6 H6 FAD sing 135 n n C7 C7M FAD sing 136 n n C7 C8 FAD doub 137 n y C7M HM71 FAD sing 138 n n C7M HM72 FAD sing 139 n n C7M HM73 FAD sing 140 n n C8 C8M FAD sing 141 n n C8 C9 FAD sing 142 n y C8M HM81 FAD sing 143 n n C8M HM82 FAD sing 144 n n C8M HM83 FAD sing 145 n n C9 C9A FAD doub 146 n y C9 H9 FAD sing 147 n n C9A N10 FAD sing 148 n n N10 C10 FAD sing 149 n n N10 C1' FAD sing 150 n n C1' C2' FAD sing 151 n n C1' "H1'1" FAD sing 152 n n C1' "H1'2" FAD sing 153 n n C2' O2' FAD sing 154 n n C2' C3' FAD sing 155 n n C2' H2' FAD sing 156 n n O2' HO2' FAD sing 157 n n C3' O3' FAD sing 158 n n C3' C4' FAD sing 159 n n C3' H3' FAD sing 160 n n O3' HO3' FAD sing 161 n n C4' O4' FAD sing 162 n n C4' C5' FAD sing 163 n n C4' H4' FAD sing 164 n n O4' HO4' FAD sing 165 n n C5' O5' FAD sing 166 n n C5' "H5'1" FAD sing 167 n n C5' "H5'2" FAD sing 168 n n O5' P FAD sing 169 n n P O1P FAD doub 170 n n P O2P FAD sing 171 n n P O3P FAD sing 172 n n O2P HOP2 FAD sing 173 n n # _atom_sites.entry_id 3W5U _atom_sites.fract_transf_matrix[1][1] 0.016891 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002801 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006509 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010126 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 3 FAD A 1 401 320 FAD FAD . J 4 FES B 1 101 99 FES FES . K 3 FAD C 1 401 320 FAD FAD . L 4 FES D 1 101 99 FES FES . M 3 FAD E 1 401 320 FAD FAD . N 4 FES F 1 101 99 FES FES . O 3 FAD G 1 401 320 FAD FAD . P 4 FES H 1 101 99 FES FES . Q 5 HOH A 1 501 1 HOH HOH . Q 5 HOH A 2 502 2 HOH HOH . Q 5 HOH A 3 503 3 HOH HOH . Q 5 HOH A 4 504 4 HOH HOH . Q 5 HOH A 5 505 15 HOH HOH . Q 5 HOH A 6 506 24 HOH HOH . Q 5 HOH A 7 507 26 HOH HOH . Q 5 HOH A 8 508 27 HOH HOH . Q 5 HOH A 9 509 28 HOH HOH . Q 5 HOH A 10 510 29 HOH HOH . Q 5 HOH A 11 511 32 HOH HOH . R 5 HOH C 1 501 5 HOH HOH . R 5 HOH C 2 502 6 HOH HOH . R 5 HOH C 3 503 9 HOH HOH . R 5 HOH C 4 504 17 HOH HOH . R 5 HOH C 5 505 21 HOH HOH . R 5 HOH C 6 506 22 HOH HOH . R 5 HOH C 7 507 25 HOH HOH . R 5 HOH C 8 508 30 HOH HOH . R 5 HOH C 9 509 33 HOH HOH . S 5 HOH E 1 501 10 HOH HOH . S 5 HOH E 2 502 11 HOH HOH . S 5 HOH E 3 503 12 HOH HOH . S 5 HOH E 4 504 13 HOH HOH . S 5 HOH E 5 505 14 HOH HOH . S 5 HOH E 6 506 23 HOH HOH . S 5 HOH E 7 507 31 HOH HOH . T 5 HOH F 1 201 19 HOH HOH . U 5 HOH G 1 501 7 HOH HOH . U 5 HOH G 2 502 8 HOH HOH . U 5 HOH G 3 503 16 HOH HOH . U 5 HOH G 4 504 18 HOH HOH . U 5 HOH G 5 505 20 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA FAD . . . M 3 20.481 11.9 40.557 1 18.8 ? PA FAD 401 E 1 HETATM 2 O O1A FAD . . . M 3 20.968 11.844 39.14 1 22.8 ? O1A FAD 401 E 1 HETATM 3 O O2A FAD . . . M 3 20.726 10.686 41.426 1 20.63 ? O2A FAD 401 E 1 HETATM 4 O O5B FAD . . . M 3 20.977 13.227 41.271 1 22.56 ? O5B FAD 401 E 1 HETATM 5 C C5B FAD . . . M 3 20.893 13.271 42.696 1 30.39 ? C5B FAD 401 E 1 HETATM 6 C C4B FAD . . . M 3 22.123 13.958 43.265 1 35.05 ? C4B FAD 401 E 1 HETATM 7 O O4B FAD . . . M 3 22.013 15.373 43.08 1 36.86 ? O4B FAD 401 E 1 HETATM 8 C C3B FAD . . . M 3 22.196 13.711 44.756 1 37.48 ? C3B FAD 401 E 1 HETATM 9 O O3B FAD . . . M 3 23.216 12.761 45.023 1 38.81 ? O3B FAD 401 E 1 HETATM 10 C C2B FAD . . . M 3 22.566 15.055 45.347 1 39.43 ? C2B FAD 401 E 1 HETATM 11 O O2B FAD . . . M 3 23.987 15.175 45.356 1 36.78 ? O2B FAD 401 E 1 HETATM 12 C C1B FAD . . . M 3 21.987 16.04 44.352 1 41.26 ? C1B FAD 401 E 1 HETATM 13 N N9A FAD . . . M 3 20.575 16.297 44.753 1 46.24 ? N9A FAD 401 E 1 HETATM 14 C C8A FAD . . . M 3 19.625 15.367 45.021 1 48.74 ? C8A FAD 401 E 1 HETATM 15 N N7A FAD . . . M 3 18.44 15.929 45.378 1 50.22 ? N7A FAD 401 E 1 HETATM 16 C C5A FAD . . . M 3 18.626 17.264 45.34 1 53.89 ? C5A FAD 401 E 1 HETATM 17 C C6A FAD . . . M 3 17.792 18.468 45.609 1 67.55 ? C6A FAD 401 E 1 HETATM 18 N N6A FAD . . . M 3 16.488 18.351 45.976 1 61.14 ? N6A FAD 401 E 1 HETATM 19 N N1A FAD . . . M 3 18.378 19.695 45.471 1 82.71 ? N1A FAD 401 E 1 HETATM 20 C C2A FAD . . . M 3 19.681 19.831 45.119 1 75.47 ? C2A FAD 401 E 1 HETATM 21 N N3A FAD . . . M 3 20.485 18.778 44.841 1 69.04 ? N3A FAD 401 E 1 HETATM 22 C C4A FAD . . . M 3 20.027 17.499 44.927 1 51.3 ? C4A FAD 401 E 1 HETATM 23 N N1 FAD . . . M 3 11.819 8.961 44.541 1 9.66 ? N1 FAD 401 E 1 HETATM 24 C C2 FAD . . . M 3 10.583 9.195 44.063 1 10.07 ? C2 FAD 401 E 1 HETATM 25 O O2 FAD . . . M 3 10.441 10.2 43.311 1 10.29 ? O2 FAD 401 E 1 HETATM 26 N N3 FAD . . . M 3 9.535 8.395 44.349 1 9.74 ? N3 FAD 401 E 1 HETATM 27 C C4 FAD . . . M 3 9.64 7.338 45.157 1 9.47 ? C4 FAD 401 E 1 HETATM 28 O O4 FAD . . . M 3 8.679 6.568 45.419 1 9.34 ? O4 FAD 401 E 1 HETATM 29 C C4X FAD . . . M 3 10.959 7.028 45.703 1 9.74 ? C4X FAD 401 E 1 HETATM 30 N N5 FAD . . . M 3 11.153 5.982 46.545 1 10.59 ? N5 FAD 401 E 1 HETATM 31 C C5X FAD . . . M 3 12.373 5.695 47.086 1 10.42 ? C5X FAD 401 E 1 HETATM 32 C C6 FAD . . . M 3 12.544 4.573 47.915 1 10.78 ? C6 FAD 401 E 1 HETATM 33 C C7 FAD . . . M 3 13.79 4.28 48.461 1 10.81 ? C7 FAD 401 E 1 HETATM 34 C C7M FAD . . . M 3 14.012 3.102 49.387 1 10.3 ? C7M FAD 401 E 1 HETATM 35 C C8 FAD . . . M 3 14.935 5.175 48.123 1 10.68 ? C8 FAD 401 E 1 HETATM 36 C C8M FAD . . . M 3 16.301 4.896 48.688 1 10.63 ? C8M FAD 401 E 1 HETATM 37 C C9 FAD . . . M 3 14.766 6.249 47.263 1 10.39 ? C9 FAD 401 E 1 HETATM 38 C C9A FAD . . . M 3 13.527 6.547 46.732 1 10.22 ? C9A FAD 401 E 1 HETATM 39 N N10 FAD . . . M 3 13.346 7.673 45.88 1 10.47 ? N10 FAD 401 E 1 HETATM 40 C C10 FAD . . . M 3 12.064 7.918 45.339 1 10.1 ? C10 FAD 401 E 1 HETATM 41 C C1' FAD . . . M 3 14.454 8.559 45.518 1 10.39 ? C1' FAD 401 E 1 HETATM 42 C C2' FAD . . . M 3 14.939 8.063 44.169 1 11.43 ? C2' FAD 401 E 1 HETATM 43 O O2' FAD . . . M 3 15.335 6.674 44.298 1 12.06 ? O2' FAD 401 E 1 HETATM 44 C C3' FAD . . . M 3 16.031 8.929 43.551 1 11.53 ? C3' FAD 401 E 1 HETATM 45 O O3' FAD . . . M 3 17.078 9.093 44.491 1 10.98 ? O3' FAD 401 E 1 HETATM 46 C C4' FAD . . . M 3 15.53 10.301 43.088 1 12.45 ? C4' FAD 401 E 1 HETATM 47 O O4' FAD . . . M 3 14.46 10.099 42.146 1 11.77 ? O4' FAD 401 E 1 HETATM 48 C C5' FAD . . . M 3 16.656 11.102 42.415 1 13.73 ? C5' FAD 401 E 1 HETATM 49 O O5' FAD . . . M 3 17.277 10.279 41.404 1 15.43 ? O5' FAD 401 E 1 HETATM 50 P P FAD . . . M 3 17.906 10.902 40.068 1 15.62 ? P FAD 401 E 1 HETATM 51 O O1P FAD . . . M 3 18.738 9.848 39.403 1 18.86 ? O1P FAD 401 E 1 HETATM 52 O O2P FAD . . . M 3 16.822 11.543 39.269 1 18.56 ? O2P FAD 401 E 1 HETATM 53 O O3P FAD . . . M 3 18.892 12.11 40.51 1 19.2 ? O3P FAD 401 E 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 292 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 53 #