data_3W5U # _model_server_result.job_id xQgF1JBR0jEBwLNrYQ7JEw _model_server_result.datetime_utc '2024-11-04 23:22:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3w5u # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"O","auth_seq_id":401}' # _entry.id 3W5U # _exptl.entry_id 3W5U _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 785.55 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN-ADENINE DINUCLEOTIDE' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 99.42 _cell.angle_gamma 90 _cell.entry_id 3W5U _cell.length_a 59.202 _cell.length_b 153.634 _cell.length_c 100.107 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3W5U _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? dimeric 2 author_defined_assembly 1 ? dimeric 2 author_defined_assembly 2 ? dimeric 2 author_defined_assembly 3 ? dimeric 2 author_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,I,J,Q 1 1 C,D,K,L,R 2 1 E,F,M,N,S,T 3 1 G,H,O,P,U 4 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 I N N ? 3 K N N ? 3 M N N ? 3 O N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 19 A CYS 19 1_555 B SG CYS 59 B CYS 59 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? disulf ? disulf2 C SG CYS 19 C CYS 19 1_555 D SG CYS 59 D CYS 59 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? disulf ? disulf3 E SG CYS 19 E CYS 19 1_555 F SG CYS 59 F CYS 59 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? disulf ? disulf4 G SG CYS 19 G CYS 19 1_555 H SG CYS 59 H CYS 59 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? metalc ? metalc1 B SG CYS 39 B CYS 39 1_555 J FE2 FES . B FES 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.328 ? metalc ? metalc2 B SG CYS 44 B CYS 44 1_555 J FE2 FES . B FES 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.145 ? metalc ? metalc3 B SG CYS 47 B CYS 47 1_555 J FE1 FES . B FES 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.205 ? metalc ? metalc4 B SG CYS 77 B CYS 77 1_555 J FE1 FES . B FES 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.159 ? metalc ? metalc5 D SG CYS 39 D CYS 39 1_555 L FE2 FES . D FES 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.282 ? metalc ? metalc6 D SG CYS 44 D CYS 44 1_555 L FE2 FES . D FES 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.226 ? metalc ? metalc7 D SG CYS 47 D CYS 47 1_555 L FE1 FES . D FES 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.247 ? metalc ? metalc8 D SG CYS 77 D CYS 77 1_555 L FE1 FES . D FES 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.18 ? metalc ? metalc9 F SG CYS 39 F CYS 39 1_555 N FE2 FES . F FES 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.339 ? metalc ? metalc10 F SG CYS 44 F CYS 44 1_555 N FE2 FES . F FES 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.23 ? metalc ? metalc11 F SG CYS 47 F CYS 47 1_555 N FE1 FES . F FES 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.071 ? metalc ? metalc12 F SG CYS 77 F CYS 77 1_555 N FE1 FES . F FES 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.255 ? metalc ? metalc13 H SG CYS 39 H CYS 39 1_555 P FE2 FES . H FES 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.248 ? metalc ? metalc14 H SG CYS 44 H CYS 44 1_555 P FE2 FES . H FES 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.215 ? metalc ? metalc15 H SG CYS 47 H CYS 47 1_555 P FE1 FES . H FES 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.116 ? metalc ? metalc16 H SG CYS 77 H CYS 77 1_555 P FE1 FES . H FES 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.346 ? # _chem_comp.formula 'C27 H33 N9 O15 P2' _chem_comp.formula_weight 785.55 _chem_comp.id FAD _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN-ADENINE DINUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A FAD doub 83 n n PA O2A FAD sing 84 n n PA O5B FAD sing 85 n n PA O3P FAD sing 86 n n O2A HOA2 FAD sing 87 n n O5B C5B FAD sing 88 n n C5B C4B FAD sing 89 n n C5B H51A FAD sing 90 n n C5B H52A FAD sing 91 n n C4B O4B FAD sing 92 n n C4B C3B FAD sing 93 n n C4B H4B FAD sing 94 n n O4B C1B FAD sing 95 n n C3B O3B FAD sing 96 n n C3B C2B FAD sing 97 n n C3B H3B FAD sing 98 n n O3B HO3A FAD sing 99 n n C2B O2B FAD sing 100 n n C2B C1B FAD sing 101 n n C2B H2B FAD sing 102 n n O2B HO2A FAD sing 103 n n C1B N9A FAD sing 104 n n C1B H1B FAD sing 105 n n N9A C8A FAD sing 106 n y N9A C4A FAD sing 107 n y C8A N7A FAD doub 108 n y C8A H8A FAD sing 109 n n N7A C5A FAD sing 110 n y C5A C6A FAD sing 111 n y C5A C4A FAD doub 112 n y C6A N6A FAD sing 113 n n C6A N1A FAD doub 114 n y N6A H61A FAD sing 115 n n N6A H62A FAD sing 116 n n N1A C2A FAD sing 117 n y C2A N3A FAD doub 118 n y C2A H2A FAD sing 119 n n N3A C4A FAD sing 120 n y N1 C2 FAD sing 121 n n N1 C10 FAD doub 122 n n C2 O2 FAD doub 123 n n C2 N3 FAD sing 124 n n N3 C4 FAD sing 125 n n N3 HN3 FAD sing 126 n n C4 O4 FAD doub 127 n n C4 C4X FAD sing 128 n n C4X N5 FAD doub 129 n n C4X C10 FAD sing 130 n n N5 C5X FAD sing 131 n n C5X C6 FAD doub 132 n y C5X C9A FAD sing 133 n y C6 C7 FAD sing 134 n y C6 H6 FAD sing 135 n n C7 C7M FAD sing 136 n n C7 C8 FAD doub 137 n y C7M HM71 FAD sing 138 n n C7M HM72 FAD sing 139 n n C7M HM73 FAD sing 140 n n C8 C8M FAD sing 141 n n C8 C9 FAD sing 142 n y C8M HM81 FAD sing 143 n n C8M HM82 FAD sing 144 n n C8M HM83 FAD sing 145 n n C9 C9A FAD doub 146 n y C9 H9 FAD sing 147 n n C9A N10 FAD sing 148 n n N10 C10 FAD sing 149 n n N10 C1' FAD sing 150 n n C1' C2' FAD sing 151 n n C1' "H1'1" FAD sing 152 n n C1' "H1'2" FAD sing 153 n n C2' O2' FAD sing 154 n n C2' C3' FAD sing 155 n n C2' H2' FAD sing 156 n n O2' HO2' FAD sing 157 n n C3' O3' FAD sing 158 n n C3' C4' FAD sing 159 n n C3' H3' FAD sing 160 n n O3' HO3' FAD sing 161 n n C4' O4' FAD sing 162 n n C4' C5' FAD sing 163 n n C4' H4' FAD sing 164 n n O4' HO4' FAD sing 165 n n C5' O5' FAD sing 166 n n C5' "H5'1" FAD sing 167 n n C5' "H5'2" FAD sing 168 n n O5' P FAD sing 169 n n P O1P FAD doub 170 n n P O2P FAD sing 171 n n P O3P FAD sing 172 n n O2P HOP2 FAD sing 173 n n # _atom_sites.entry_id 3W5U _atom_sites.fract_transf_matrix[1][1] 0.016891 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002801 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006509 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010126 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 3 FAD A 1 401 320 FAD FAD . J 4 FES B 1 101 99 FES FES . K 3 FAD C 1 401 320 FAD FAD . L 4 FES D 1 101 99 FES FES . M 3 FAD E 1 401 320 FAD FAD . N 4 FES F 1 101 99 FES FES . O 3 FAD G 1 401 320 FAD FAD . P 4 FES H 1 101 99 FES FES . Q 5 HOH A 1 501 1 HOH HOH . Q 5 HOH A 2 502 2 HOH HOH . Q 5 HOH A 3 503 3 HOH HOH . Q 5 HOH A 4 504 4 HOH HOH . Q 5 HOH A 5 505 15 HOH HOH . Q 5 HOH A 6 506 24 HOH HOH . Q 5 HOH A 7 507 26 HOH HOH . Q 5 HOH A 8 508 27 HOH HOH . Q 5 HOH A 9 509 28 HOH HOH . Q 5 HOH A 10 510 29 HOH HOH . Q 5 HOH A 11 511 32 HOH HOH . R 5 HOH C 1 501 5 HOH HOH . R 5 HOH C 2 502 6 HOH HOH . R 5 HOH C 3 503 9 HOH HOH . R 5 HOH C 4 504 17 HOH HOH . R 5 HOH C 5 505 21 HOH HOH . R 5 HOH C 6 506 22 HOH HOH . R 5 HOH C 7 507 25 HOH HOH . R 5 HOH C 8 508 30 HOH HOH . R 5 HOH C 9 509 33 HOH HOH . S 5 HOH E 1 501 10 HOH HOH . S 5 HOH E 2 502 11 HOH HOH . S 5 HOH E 3 503 12 HOH HOH . S 5 HOH E 4 504 13 HOH HOH . S 5 HOH E 5 505 14 HOH HOH . S 5 HOH E 6 506 23 HOH HOH . S 5 HOH E 7 507 31 HOH HOH . T 5 HOH F 1 201 19 HOH HOH . U 5 HOH G 1 501 7 HOH HOH . U 5 HOH G 2 502 8 HOH HOH . U 5 HOH G 3 503 16 HOH HOH . U 5 HOH G 4 504 18 HOH HOH . U 5 HOH G 5 505 20 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA FAD . . . O 3 0.407 -42.285 55.149 1 20.58 ? PA FAD 401 G 1 HETATM 2 O O1A FAD . . . O 3 -1.054 -42.464 54.773 1 19.13 ? O1A FAD 401 G 1 HETATM 3 O O2A FAD . . . O 3 0.906 -40.964 55.697 1 18.74 ? O2A FAD 401 G 1 HETATM 4 O O5B FAD . . . O 3 0.856 -43.445 56.184 1 19.95 ? O5B FAD 401 G 1 HETATM 5 C C5B FAD . . . O 3 2.172 -43.486 56.7 1 22.25 ? C5B FAD 401 G 1 HETATM 6 C C4B FAD . . . O 3 2.138 -44.079 58.091 1 26.75 ? C4B FAD 401 G 1 HETATM 7 O O4B FAD . . . O 3 2.084 -45.514 58.065 1 32.34 ? O4B FAD 401 G 1 HETATM 8 C C3B FAD . . . O 3 3.415 -43.725 58.809 1 28.68 ? C3B FAD 401 G 1 HETATM 9 O O3B FAD . . . O 3 3.151 -42.645 59.69 1 31.28 ? O3B FAD 401 G 1 HETATM 10 C C2B FAD . . . O 3 3.758 -44.956 59.612 1 30.96 ? C2B FAD 401 G 1 HETATM 11 O O2B FAD . . . O 3 3.105 -44.848 60.88 1 31.21 ? O2B FAD 401 G 1 HETATM 12 C C1B FAD . . . O 3 3.171 -46.094 58.796 1 36.16 ? C1B FAD 401 G 1 HETATM 13 N N9A FAD . . . O 3 4.212 -46.462 57.799 1 47.45 ? N9A FAD 401 G 1 HETATM 14 C C8A FAD . . . O 3 4.795 -45.565 56.961 1 55.38 ? C8A FAD 401 G 1 HETATM 15 N N7A FAD . . . O 3 5.719 -46.151 56.159 1 53.78 ? N7A FAD 401 G 1 HETATM 16 C C5A FAD . . . O 3 5.747 -47.461 56.483 1 45.88 ? C5A FAD 401 G 1 HETATM 17 C C6A FAD . . . O 3 6.524 -48.635 55.998 1 47.79 ? C6A FAD 401 G 1 HETATM 18 N N6A FAD . . . O 3 7.441 -48.483 54.998 1 38.67 ? N6A FAD 401 G 1 HETATM 19 N N1A FAD . . . O 3 6.257 -49.837 56.596 1 47.5 ? N1A FAD 401 G 1 HETATM 20 C C2A FAD . . . O 3 5.341 -49.949 57.601 1 45.19 ? C2A FAD 401 G 1 HETATM 21 N N3A FAD . . . O 3 4.601 -48.92 58.09 1 42.76 ? N3A FAD 401 G 1 HETATM 22 C C4A FAD . . . O 3 4.753 -47.671 57.566 1 44.2 ? C4A FAD 401 G 1 HETATM 23 N N1 FAD . . . O 3 7.818 -39.327 49.3 1 15.84 ? N1 FAD 401 G 1 HETATM 24 C C2 FAD . . . O 3 8.041 -39.699 48.014 1 15.21 ? C2 FAD 401 G 1 HETATM 25 O O2 FAD . . . O 3 7.567 -40.77 47.545 1 14.06 ? O2 FAD 401 G 1 HETATM 26 N N3 FAD . . . O 3 8.753 -38.917 47.211 1 15.44 ? N3 FAD 401 G 1 HETATM 27 C C4 FAD . . . O 3 9.346 -37.812 47.611 1 15.2 ? C4 FAD 401 G 1 HETATM 28 O O4 FAD . . . O 3 10.03 -37.191 46.788 1 16.7 ? O4 FAD 401 G 1 HETATM 29 C C4X FAD . . . O 3 9.19 -37.352 48.999 1 14.91 ? C4X FAD 401 G 1 HETATM 30 N N5 FAD . . . O 3 9.749 -36.216 49.478 1 15.51 ? N5 FAD 401 G 1 HETATM 31 C C5X FAD . . . O 3 9.519 -35.827 50.758 1 15.01 ? C5X FAD 401 G 1 HETATM 32 C C6 FAD . . . O 3 10.068 -34.646 51.242 1 13.94 ? C6 FAD 401 G 1 HETATM 33 C C7 FAD . . . O 3 9.855 -34.276 52.563 1 13.82 ? C7 FAD 401 G 1 HETATM 34 C C7M FAD . . . O 3 10.464 -33.022 53.123 1 14.41 ? C7M FAD 401 G 1 HETATM 35 C C8 FAD . . . O 3 9.04 -35.124 53.458 1 14.39 ? C8 FAD 401 G 1 HETATM 36 C C8M FAD . . . O 3 8.815 -34.695 54.894 1 14.45 ? C8M FAD 401 G 1 HETATM 37 C C9 FAD . . . O 3 8.47 -36.301 52.976 1 14.26 ? C9 FAD 401 G 1 HETATM 38 C C9A FAD . . . O 3 8.67 -36.671 51.658 1 14.7 ? C9A FAD 401 G 1 HETATM 39 N N10 FAD . . . O 3 8.102 -37.847 51.157 1 15.11 ? N10 FAD 401 G 1 HETATM 40 C C10 FAD . . . O 3 8.345 -38.202 49.83 1 15.13 ? C10 FAD 401 G 1 HETATM 41 C C1' FAD . . . O 3 7.28 -38.743 51.973 1 17.25 ? C1' FAD 401 G 1 HETATM 42 C C2' FAD . . . O 3 5.798 -38.375 51.804 1 17.76 ? C2' FAD 401 G 1 HETATM 43 O O2' FAD . . . O 3 5.637 -37.027 52.27 1 18.91 ? O2' FAD 401 G 1 HETATM 44 C C3' FAD . . . O 3 4.831 -39.305 52.561 1 16.48 ? C3' FAD 401 G 1 HETATM 45 O O3' FAD . . . O 3 5.293 -39.401 53.902 1 13.95 ? O3' FAD 401 G 1 HETATM 46 C C4' FAD . . . O 3 4.801 -40.722 51.972 1 16.84 ? C4' FAD 401 G 1 HETATM 47 O O4' FAD . . . O 3 4.526 -40.645 50.571 1 18.15 ? O4' FAD 401 G 1 HETATM 48 C C5' FAD . . . O 3 3.761 -41.603 52.642 1 15.46 ? C5' FAD 401 G 1 HETATM 49 O O5' FAD . . . O 3 2.544 -40.872 52.616 1 15.99 ? O5' FAD 401 G 1 HETATM 50 P P FAD . . . O 3 1.11 -41.595 52.531 1 15.53 ? P FAD 401 G 1 HETATM 51 O O1P FAD . . . O 3 0.082 -40.517 52.793 1 17.4 ? O1P FAD 401 G 1 HETATM 52 O O2P FAD . . . O 3 1.009 -42.441 51.303 1 15.34 ? O2P FAD 401 G 1 HETATM 53 O O3P FAD . . . O 3 1.206 -42.591 53.789 1 17.91 ? O3P FAD 401 G 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 26 _model_server_stats.query_time_ms 273 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 53 #