data_3W67
#
_model_server_result.job_id            3_ls0iseWsgXus6Ktxm8mg 
_model_server_result.datetime_utc      '2024-11-29 08:36:30' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3w67 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"K","auth_seq_id":301}' 
#
_entry.id    3W67 
#
_exptl.entry_id    3W67 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              430.706 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (2R)-2,5,7,8-TETRAMETHYL-2-[(4R,8R)-4,8,12-TRIMETHYLTRIDECYL]CHROMAN-6-OL 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         100.24 
_cell.angle_beta          109.72 
_cell.angle_gamma         100.46 
_cell.entry_id            3W67 
_cell.length_a            58.285 
_cell.length_b            69.665 
_cell.length_c            87.183 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3W67 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? tetrameric 4 author_defined_assembly 1 
PISA monomeric 1 software_defined_assembly 2 
PISA monomeric 1 software_defined_assembly 3 
PISA monomeric 1 software_defined_assembly 4 
PISA monomeric 1 software_defined_assembly 5 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,E,F,G,H,I,J,K,L,M,N,O 1 1 
A,E,F,M 2 1 
B,G,H,N 3 1 
C,I,J 4 1 
D,K,L,O 5 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 G N N 
? 2 I N N 
? 2 K N N 
#
_chem_comp.formula           'C29 H50 O2' 
_chem_comp.formula_weight    430.706 
_chem_comp.id                VIV 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (2R)-2,5,7,8-TETRAMETHYL-2-[(4R,8R)-4,8,12-TRIMETHYLTRIDECYL]CHROMAN-6-OL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O1 C4 VIV sing 448 n n 
O1 C9 VIV sing 449 n n 
O2 C7 VIV sing 450 n n 
O2 HO21 VIV sing 451 n n 
C1 C23 VIV sing 452 n n 
C1 HC11 VIV sing 453 n n 
C1 HC12 VIV sing 454 n n 
C1 HC13 VIV sing 455 n n 
C2 C3 VIV doub 456 n y 
C2 C7 VIV sing 457 n y 
C2 C8 VIV sing 458 n n 
C3 C4 VIV sing 459 n y 
C3 C10 VIV sing 460 n n 
C4 C5 VIV doub 461 n y 
C5 C6 VIV sing 462 n y 
C5 C12 VIV sing 463 n n 
C6 C7 VIV doub 464 n y 
C6 C13 VIV sing 465 n n 
C8 HC81 VIV sing 466 n n 
C8 HC82 VIV sing 467 n n 
C8 HC83 VIV sing 468 n n 
C9 C11 VIV sing 469 n n 
C9 C14 VIV sing 470 n n 
C9 C15 VIV sing 471 n n 
C10 C11 VIV sing 472 n n 
C10 H101 VIV sing 473 n n 
C10 H102 VIV sing 474 n n 
C11 H111 VIV sing 475 n n 
C11 H112 VIV sing 476 n n 
C12 H121 VIV sing 477 n n 
C12 H122 VIV sing 478 n n 
C12 H123 VIV sing 479 n n 
C13 H131 VIV sing 480 n n 
C13 H132 VIV sing 481 n n 
C13 H133 VIV sing 482 n n 
C14 H141 VIV sing 483 n n 
C14 H142 VIV sing 484 n n 
C14 H143 VIV sing 485 n n 
C15 C16 VIV sing 486 n n 
C15 H151 VIV sing 487 n n 
C15 H152 VIV sing 488 n n 
C16 C17 VIV sing 489 n n 
C16 H161 VIV sing 490 n n 
C16 H162 VIV sing 491 n n 
C17 C18 VIV sing 492 n n 
C17 H171 VIV sing 493 n n 
C17 H172 VIV sing 494 n n 
C18 C19 VIV sing 495 n n 
C18 C20 VIV sing 496 n n 
C18 H18 VIV sing 497 n n 
C19 H191 VIV sing 498 n n 
C19 H192 VIV sing 499 n n 
C19 H193 VIV sing 500 n n 
C20 C21 VIV sing 501 n n 
C20 H201 VIV sing 502 n n 
C20 H202 VIV sing 503 n n 
C21 C22 VIV sing 504 n n 
C21 H211 VIV sing 505 n n 
C21 H212 VIV sing 506 n n 
C22 C23 VIV sing 507 n n 
C22 H221 VIV sing 508 n n 
C22 H222 VIV sing 509 n n 
C23 C24 VIV sing 510 n n 
C23 H23 VIV sing 511 n n 
C24 C25 VIV sing 512 n n 
C24 H241 VIV sing 513 n n 
C24 H242 VIV sing 514 n n 
C25 C26 VIV sing 515 n n 
C25 H251 VIV sing 516 n n 
C25 H252 VIV sing 517 n n 
C26 C27 VIV sing 518 n n 
C26 H261 VIV sing 519 n n 
C26 H262 VIV sing 520 n n 
C27 C28 VIV sing 521 n n 
C27 C29 VIV sing 522 n n 
C27 H27 VIV sing 523 n n 
C28 H281 VIV sing 524 n n 
C28 H282 VIV sing 525 n n 
C28 H283 VIV sing 526 n n 
C29 H291 VIV sing 527 n n 
C29 H292 VIV sing 528 n n 
C29 H293 VIV sing 529 n n 
#
_atom_sites.entry_id                     3W67 
_atom_sites.fract_transf_matrix[1][1]    0.017157 
_atom_sites.fract_transf_matrix[1][2]    0.003169 
_atom_sites.fract_transf_matrix[1][3]    0.007214 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014597 
_atom_sites.fract_transf_matrix[2][3]    0.003903 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012613 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 VIV A 1 301 1278 VIV VIV . 
F 3 3PT A 1 302 870 3PT 4PT . 
G 2 VIV B 1 301 1278 VIV VIV . 
H 3 3PT B 1 302 870 3PT 4PT . 
I 2 VIV C 1 301 1278 VIV VIV . 
J 3 3PT C 1 302 870 3PT 4PT . 
K 2 VIV D 1 301 1278 VIV VIV . 
L 3 3PT D 1 302 870 3PT 4PT . 
M 4 HOH A 1 401 2 HOH HOH . 
M 4 HOH A 2 402 3 HOH HOH . 
M 4 HOH A 3 403 4 HOH HOH . 
M 4 HOH A 4 404 6 HOH HOH . 
M 4 HOH A 5 405 7 HOH HOH . 
M 4 HOH A 6 406 11 HOH HOH . 
M 4 HOH A 7 407 12 HOH HOH . 
M 4 HOH A 8 408 13 HOH HOH . 
M 4 HOH A 9 409 17 HOH HOH . 
M 4 HOH A 10 410 18 HOH HOH . 
M 4 HOH A 11 411 21 HOH HOH . 
M 4 HOH A 12 412 22 HOH HOH . 
M 4 HOH A 13 413 23 HOH HOH . 
M 4 HOH A 14 414 27 HOH HOH . 
M 4 HOH A 15 415 28 HOH HOH . 
M 4 HOH A 16 416 33 HOH HOH . 
M 4 HOH A 17 417 34 HOH HOH . 
M 4 HOH A 18 418 35 HOH HOH . 
M 4 HOH A 19 419 36 HOH HOH . 
M 4 HOH A 20 420 37 HOH HOH . 
M 4 HOH A 21 421 38 HOH HOH . 
M 4 HOH A 22 422 39 HOH HOH . 
M 4 HOH A 23 423 40 HOH HOH . 
M 4 HOH A 24 424 41 HOH HOH . 
M 4 HOH A 25 425 42 HOH HOH . 
M 4 HOH A 26 426 43 HOH HOH . 
M 4 HOH A 27 427 44 HOH HOH . 
M 4 HOH A 28 428 45 HOH HOH . 
M 4 HOH A 29 429 46 HOH HOH . 
M 4 HOH A 30 430 71 HOH HOH . 
M 4 HOH A 31 431 72 HOH HOH . 
M 4 HOH A 32 432 73 HOH HOH . 
M 4 HOH A 33 433 74 HOH HOH . 
M 4 HOH A 34 434 75 HOH HOH . 
M 4 HOH A 35 435 76 HOH HOH . 
M 4 HOH A 36 436 77 HOH HOH . 
M 4 HOH A 37 437 78 HOH HOH . 
M 4 HOH A 38 438 79 HOH HOH . 
M 4 HOH A 39 439 80 HOH HOH . 
M 4 HOH A 40 440 81 HOH HOH . 
M 4 HOH A 41 441 82 HOH HOH . 
M 4 HOH A 42 442 83 HOH HOH . 
N 4 HOH B 1 401 1 HOH HOH . 
N 4 HOH B 2 402 9 HOH HOH . 
N 4 HOH B 3 403 10 HOH HOH . 
N 4 HOH B 4 404 14 HOH HOH . 
N 4 HOH B 5 405 16 HOH HOH . 
N 4 HOH B 6 406 24 HOH HOH . 
N 4 HOH B 7 407 25 HOH HOH . 
N 4 HOH B 8 408 26 HOH HOH . 
N 4 HOH B 9 409 29 HOH HOH . 
N 4 HOH B 10 410 30 HOH HOH . 
N 4 HOH B 11 411 47 HOH HOH . 
N 4 HOH B 12 412 48 HOH HOH . 
N 4 HOH B 13 413 49 HOH HOH . 
N 4 HOH B 14 414 50 HOH HOH . 
N 4 HOH B 15 415 51 HOH HOH . 
N 4 HOH B 16 416 52 HOH HOH . 
N 4 HOH B 17 417 53 HOH HOH . 
N 4 HOH B 18 418 54 HOH HOH . 
N 4 HOH B 19 419 55 HOH HOH . 
N 4 HOH B 20 420 56 HOH HOH . 
N 4 HOH B 21 421 57 HOH HOH . 
N 4 HOH B 22 422 58 HOH HOH . 
N 4 HOH B 23 423 59 HOH HOH . 
N 4 HOH B 24 424 84 HOH HOH . 
N 4 HOH B 25 425 85 HOH HOH . 
N 4 HOH B 26 426 86 HOH HOH . 
N 4 HOH B 27 427 87 HOH HOH . 
N 4 HOH B 28 428 88 HOH HOH . 
N 4 HOH B 29 429 89 HOH HOH . 
N 4 HOH B 30 430 90 HOH HOH . 
N 4 HOH B 31 431 91 HOH HOH . 
N 4 HOH B 32 432 92 HOH HOH . 
N 4 HOH B 33 433 93 HOH HOH . 
N 4 HOH B 34 434 94 HOH HOH . 
N 4 HOH B 35 435 95 HOH HOH . 
N 4 HOH B 36 436 96 HOH HOH . 
N 4 HOH B 37 437 97 HOH HOH . 
N 4 HOH B 38 438 98 HOH HOH . 
N 4 HOH B 39 439 99 HOH HOH . 
N 4 HOH B 40 440 100 HOH HOH . 
N 4 HOH B 41 441 101 HOH HOH . 
N 4 HOH B 42 442 102 HOH HOH . 
O 4 HOH D 1 401 20 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O1 VIV . . . K 2 25.896 -13.043 -36.67 1 78.55 ? O1 VIV 301 D 1 
HETATM 2 O O2 VIV . . . K 2 28.906 -16.633 -39.603 1 78.22 ? O2 VIV 301 D 1 
HETATM 3 C C1 VIV . . . K 2 23.864 -12.407 -27.529 1 80.15 ? C1 VIV 301 D 1 
HETATM 4 C C2 VIV . . . K 2 28.44 -15.566 -37.492 1 79.02 ? C2 VIV 301 D 1 
HETATM 5 C C3 VIV . . . K 2 27.692 -14.671 -36.719 1 78.47 ? C3 VIV 301 D 1 
HETATM 6 C C4 VIV . . . K 2 26.674 -13.951 -37.355 1 78.55 ? C4 VIV 301 D 1 
HETATM 7 C C5 VIV . . . K 2 26.433 -14.121 -38.719 1 79.07 ? C5 VIV 301 D 1 
HETATM 8 C C6 VIV . . . K 2 27.188 -15.021 -39.464 1 79 ? C6 VIV 301 D 1 
HETATM 9 C C7 VIV . . . K 2 28.189 -15.749 -38.853 1 79 ? C7 VIV 301 D 1 
HETATM 10 C C8 VIV . . . K 2 29.557 -16.385 -36.833 1 80.05 ? C8 VIV 301 D 1 
HETATM 11 C C9 VIV . . . K 2 25.816 -13.092 -35.216 1 78.12 ? C9 VIV 301 D 1 
HETATM 12 C C10 VIV . . . K 2 27.975 -14.49 -35.22 1 78.25 ? C10 VIV 301 D 1 
HETATM 13 C C11 VIV . . . K 2 27.211 -13.306 -34.606 1 77.92 ? C11 VIV 301 D 1 
HETATM 14 C C12 VIV . . . K 2 25.321 -13.315 -39.406 1 79.04 ? C12 VIV 301 D 1 
HETATM 15 C C13 VIV . . . K 2 26.917 -15.227 -40.948 1 79.34 ? C13 VIV 301 D 1 
HETATM 16 C C14 VIV . . . K 2 24.846 -14.218 -34.809 1 78.48 ? C14 VIV 301 D 1 
HETATM 17 C C15 VIV . . . K 2 25.31 -11.704 -34.753 1 77.07 ? C15 VIV 301 D 1 
HETATM 18 C C16 VIV . . . K 2 24.647 -11.687 -33.356 1 75.8 ? C16 VIV 301 D 1 
HETATM 19 C C17 VIV . . . K 2 23.79 -10.423 -33.165 1 75.09 ? C17 VIV 301 D 1 
HETATM 20 C C18 VIV . . . K 2 23.633 -10.011 -31.69 1 75.63 ? C18 VIV 301 D 1 
HETATM 21 C C19 VIV . . . K 2 22.807 -8.719 -31.6 1 75.38 ? C19 VIV 301 D 1 
HETATM 22 C C20 VIV . . . K 2 25.015 -9.924 -30.997 1 76.42 ? C20 VIV 301 D 1 
HETATM 23 C C21 VIV . . . K 2 24.991 -9.589 -29.632 1 77.83 ? C21 VIV 301 D 1 
HETATM 24 C C22 VIV . . . K 2 24.967 -10.486 -28.555 1 77.5 ? C22 VIV 301 D 1 
HETATM 25 C C23 VIV . . . K 2 24.798 -12.005 -28.675 1 78.17 ? C23 VIV 301 D 1 
HETATM 26 C C24 VIV . . . K 2 26.134 -12.764 -28.637 1 78.28 ? C24 VIV 301 D 1 
HETATM 27 C C25 VIV . . . K 2 25.924 -14.289 -28.582 1 80.24 ? C25 VIV 301 D 1 
HETATM 28 C C26 VIV . . . K 2 26.16 -15.008 -29.924 1 82.59 ? C26 VIV 301 D 1 
HETATM 29 C C27 VIV . . . K 2 27.511 -15.775 -29.96 1 84.61 ? C27 VIV 301 D 1 
HETATM 30 C C28 VIV . . . K 2 27.82 -16.342 -31.353 1 85.77 ? C28 VIV 301 D 1 
HETATM 31 C C29 VIV . . . K 2 27.592 -16.911 -28.935 1 85.03 ? C29 VIV 301 D 1 
#
_model_server_stats.io_time_ms              21 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    15 
_model_server_stats.query_time_ms           275 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           31 
#