data_3W6U # _model_server_result.job_id Al93N0UwoRJ74JU_8-tELw _model_server_result.datetime_utc '2024-10-13 19:23:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3w6u # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 3W6U # _exptl.entry_id 3W6U _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 743.405 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 106.69 _cell.angle_gamma 90 _cell.entry_id 3W6U _cell.length_a 121.603 _cell.length_b 56.827 _cell.length_c 56.571 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3W6U _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C 1 1 A,B,C 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_657 -x+1,y,-z+2 -1 0 0 0 1 0 0 0 -1 89.109371 0 108.375626 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C MSE 21 A MSE 1 1_555 A N ARG 22 A ARG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.291 ? covale ? covale2 A C ILE 30 A ILE 10 1_555 A N MSE 31 A MSE 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.318 ? covale ? covale3 A C MSE 31 A MSE 11 1_555 A N GLY 32 A GLY 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.304 ? covale ? covale4 A C PRO 34 A PRO 14 1_555 A N MSE 35 A MSE 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.319 ? covale ? covale5 A C MSE 35 A MSE 15 1_555 A N ALA 36 A ALA 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale6 A C VAL 82 A VAL 62 1_555 A N MSE 83 A MSE 63 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.32 ? covale ? covale7 A C MSE 83 A MSE 63 1_555 A N VAL 84 A VAL 64 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.31 ? covale ? covale8 A C ASP 112 A ASP 92 1_555 A N MSE 113 A MSE 93 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale9 A C MSE 113 A MSE 93 1_555 A N SER 114 A SER 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.296 ? covale ? covale10 A C ILE 154 A ILE 134 1_555 A N MSE 155 A MSE 135 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.31 ? covale ? covale11 A C MSE 155 A MSE 135 1_555 A N VAL 156 A VAL 136 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.3 ? covale ? covale12 A C ALA 172 A ALA 152 1_555 A N MSE 173 A MSE 153 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale13 A C MSE 173 A MSE 153 1_555 A N GLY 174 A GLY 154 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale14 A C TYR 179 A TYR 159 1_555 A N MSE 180 A MSE 160 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.315 ? covale ? covale15 A C MSE 180 A MSE 160 1_555 A N GLY 181 A GLY 161 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.315 ? covale ? covale16 A C ALA 188 A ALA 168 1_555 A N MSE 189 A MSE 169 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale17 A C MSE 189 A MSE 169 1_555 A N LYS 190 A LYS 170 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.289 ? covale ? covale18 A C ALA 203 A ALA 183 1_555 A N MSE 204 A MSE 184 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale19 A C MSE 204 A MSE 184 1_555 A N VAL 205 A VAL 185 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.308 ? covale ? covale20 A C ASP 217 A ASP 197 1_555 A N MSE 218 A MSE 198 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.311 ? covale ? covale21 A C MSE 218 A MSE 198 1_555 A N ASP 219 A ASP 199 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.295 ? covale ? covale22 A C LYS 286 A LYS 266 1_555 A N MSE 287 A MSE 267 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale23 A C MSE 287 A MSE 267 1_555 A N VAL 288 A VAL 268 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.346 ? # _chem_comp.formula 'C21 H28 N7 O17 P3' _chem_comp.formula_weight 743.405 _chem_comp.id NAP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" # _atom_sites.entry_id 3W6U _atom_sites.fract_transf_matrix[1][1] 0.008223 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002466 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017597 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018454 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAP A 1 301 301 NAP NAP . C 3 HOH A 1 401 1 HOH HOH . C 3 HOH A 2 402 2 HOH HOH . C 3 HOH A 3 403 3 HOH HOH . C 3 HOH A 4 404 4 HOH HOH . C 3 HOH A 5 405 5 HOH HOH . C 3 HOH A 6 406 6 HOH HOH . C 3 HOH A 7 407 7 HOH HOH . C 3 HOH A 8 408 8 HOH HOH . C 3 HOH A 9 409 9 HOH HOH . C 3 HOH A 10 410 10 HOH HOH . C 3 HOH A 11 411 11 HOH HOH . C 3 HOH A 12 412 12 HOH HOH . C 3 HOH A 13 413 13 HOH HOH . C 3 HOH A 14 414 14 HOH HOH . C 3 HOH A 15 415 15 HOH HOH . C 3 HOH A 16 416 16 HOH HOH . C 3 HOH A 17 417 17 HOH HOH . C 3 HOH A 18 418 18 HOH HOH . C 3 HOH A 19 419 19 HOH HOH . C 3 HOH A 20 420 20 HOH HOH . C 3 HOH A 21 421 21 HOH HOH . C 3 HOH A 22 422 22 HOH HOH . C 3 HOH A 23 423 23 HOH HOH . C 3 HOH A 24 424 24 HOH HOH . C 3 HOH A 25 425 25 HOH HOH . C 3 HOH A 26 426 26 HOH HOH . C 3 HOH A 27 427 27 HOH HOH . C 3 HOH A 28 428 28 HOH HOH . C 3 HOH A 29 429 29 HOH HOH . C 3 HOH A 30 430 30 HOH HOH . C 3 HOH A 31 431 31 HOH HOH . C 3 HOH A 32 432 32 HOH HOH . C 3 HOH A 33 433 33 HOH HOH . C 3 HOH A 34 434 34 HOH HOH . C 3 HOH A 35 435 35 HOH HOH . C 3 HOH A 36 436 36 HOH HOH . C 3 HOH A 37 437 37 HOH HOH . C 3 HOH A 38 438 38 HOH HOH . C 3 HOH A 39 439 39 HOH HOH . C 3 HOH A 40 440 40 HOH HOH . C 3 HOH A 41 441 41 HOH HOH . C 3 HOH A 42 442 42 HOH HOH . C 3 HOH A 43 443 43 HOH HOH . C 3 HOH A 44 444 44 HOH HOH . C 3 HOH A 45 445 45 HOH HOH . C 3 HOH A 46 446 46 HOH HOH . C 3 HOH A 47 447 47 HOH HOH . C 3 HOH A 48 448 48 HOH HOH . C 3 HOH A 49 449 49 HOH HOH . C 3 HOH A 50 450 50 HOH HOH . C 3 HOH A 51 451 51 HOH HOH . C 3 HOH A 52 452 52 HOH HOH . C 3 HOH A 53 453 53 HOH HOH . C 3 HOH A 54 454 54 HOH HOH . C 3 HOH A 55 455 55 HOH HOH . C 3 HOH A 56 456 56 HOH HOH . C 3 HOH A 57 457 57 HOH HOH . C 3 HOH A 58 458 58 HOH HOH . C 3 HOH A 59 459 59 HOH HOH . C 3 HOH A 60 460 60 HOH HOH . C 3 HOH A 61 461 61 HOH HOH . C 3 HOH A 62 462 62 HOH HOH . C 3 HOH A 63 463 63 HOH HOH . C 3 HOH A 64 464 64 HOH HOH . C 3 HOH A 65 465 65 HOH HOH . C 3 HOH A 66 466 66 HOH HOH . C 3 HOH A 67 467 67 HOH HOH . C 3 HOH A 68 468 68 HOH HOH . C 3 HOH A 69 469 69 HOH HOH . C 3 HOH A 70 470 70 HOH HOH . C 3 HOH A 71 471 71 HOH HOH . C 3 HOH A 72 472 72 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAP . . . B 2 25.718 23.329 39.663 1 25.18 ? PA NAP 301 A 1 HETATM 2 O O1A NAP . . . B 2 25.366 21.927 39.998 1 23.04 ? O1A NAP 301 A 1 HETATM 3 O O2A NAP . . . B 2 25.189 24.446 40.489 1 25.28 ? O2A NAP 301 A 1 HETATM 4 O O5B NAP . . . B 2 25.272 23.585 38.159 1 23.2 ? O5B NAP 301 A 1 HETATM 5 C C5B NAP . . . B 2 25.529 22.6 37.168 1 28.84 ? C5B NAP 301 A 1 HETATM 6 C C4B NAP . . . B 2 25.105 23.242 35.843 1 24.78 ? C4B NAP 301 A 1 HETATM 7 O O4B NAP . . . B 2 25.381 22.369 34.765 1 24.65 ? O4B NAP 301 A 1 HETATM 8 C C3B NAP . . . B 2 23.604 23.454 35.788 1 20.47 ? C3B NAP 301 A 1 HETATM 9 O O3B NAP . . . B 2 23.371 24.647 35.019 1 28.02 ? O3B NAP 301 A 1 HETATM 10 C C2B NAP . . . B 2 23.105 22.244 35.032 1 23.05 ? C2B NAP 301 A 1 HETATM 11 O O2B NAP . . . B 2 21.848 22.491 34.403 1 24.33 ? O2B NAP 301 A 1 HETATM 12 C C1B NAP . . . B 2 24.203 22.151 34.003 1 24.11 ? C1B NAP 301 A 1 HETATM 13 N N9A NAP . . . B 2 24.312 20.804 33.394 1 25.21 ? N9A NAP 301 A 1 HETATM 14 C C8A NAP . . . B 2 24.733 19.684 33.999 1 23.38 ? C8A NAP 301 A 1 HETATM 15 N N7A NAP . . . B 2 24.727 18.643 33.131 1 22.52 ? N7A NAP 301 A 1 HETATM 16 C C5A NAP . . . B 2 24.307 19.129 31.949 1 24.69 ? C5A NAP 301 A 1 HETATM 17 C C6A NAP . . . B 2 24.057 18.554 30.633 1 24.54 ? C6A NAP 301 A 1 HETATM 18 N N6A NAP . . . B 2 24.314 17.226 30.426 1 23.3 ? N6A NAP 301 A 1 HETATM 19 N N1A NAP . . . B 2 23.608 19.386 29.67 1 19.6 ? N1A NAP 301 A 1 HETATM 20 C C2A NAP . . . B 2 23.388 20.715 29.869 1 22.89 ? C2A NAP 301 A 1 HETATM 21 N N3A NAP . . . B 2 23.564 21.303 31.078 1 23.83 ? N3A NAP 301 A 1 HETATM 22 C C4A NAP . . . B 2 24.03 20.563 32.116 1 20.76 ? C4A NAP 301 A 1 HETATM 23 O O3 NAP . . . B 2 27.304 23.418 39.559 1 29.65 ? O3 NAP 301 A 1 HETATM 24 P PN NAP . . . B 2 28.211 24.721 39.712 1 26.37 ? PN NAP 301 A 1 HETATM 25 O O1N NAP . . . B 2 28.602 24.845 41.152 1 26.13 ? O1N NAP 301 A 1 HETATM 26 O O2N NAP . . . B 2 27.726 25.901 38.947 1 22.38 ? O2N NAP 301 A 1 HETATM 27 O O5D NAP . . . B 2 29.583 24.2 39.053 1 27.29 ? O5D NAP 301 A 1 HETATM 28 C C5D NAP . . . B 2 29.741 24.006 37.649 1 26.08 ? C5D NAP 301 A 1 HETATM 29 C C4D NAP . . . B 2 31.204 23.676 37.316 1 28.86 ? C4D NAP 301 A 1 HETATM 30 O O4D NAP . . . B 2 32.182 24.578 37.909 1 32.73 ? O4D NAP 301 A 1 HETATM 31 C C3D NAP . . . B 2 31.583 22.294 37.804 1 28.09 ? C3D NAP 301 A 1 HETATM 32 O O3D NAP . . . B 2 32.488 21.784 36.819 1 23.57 ? O3D NAP 301 A 1 HETATM 33 C C2D NAP . . . B 2 32.301 22.594 39.103 1 29.35 ? C2D NAP 301 A 1 HETATM 34 O O2D NAP . . . B 2 33.123 21.486 39.486 1 21.48 ? O2D NAP 301 A 1 HETATM 35 C C1D NAP . . . B 2 33.067 23.888 38.779 1 28.02 ? C1D NAP 301 A 1 HETATM 36 N N1N NAP . . . B 2 33.318 24.791 39.897 1 28.26 ? N1N NAP 301 A 1 HETATM 37 C C2N NAP . . . B 2 32.48 24.912 40.954 1 32.72 ? C2N NAP 301 A 1 HETATM 38 C C3N NAP . . . B 2 32.779 25.815 41.995 1 38.65 ? C3N NAP 301 A 1 HETATM 39 C C7N NAP . . . B 2 31.88 26.001 43.221 1 36.41 ? C7N NAP 301 A 1 HETATM 40 O O7N NAP . . . B 2 32.38 26.22 44.311 1 34.71 ? O7N NAP 301 A 1 HETATM 41 N N7N NAP . . . B 2 30.555 25.955 43.175 1 36.73 ? N7N NAP 301 A 1 HETATM 42 C C4N NAP . . . B 2 33.971 26.546 41.923 1 33.39 ? C4N NAP 301 A 1 HETATM 43 C C5N NAP . . . B 2 34.806 26.417 40.814 1 28.65 ? C5N NAP 301 A 1 HETATM 44 C C6N NAP . . . B 2 34.443 25.525 39.823 1 29.87 ? C6N NAP 301 A 1 HETATM 45 P P2B NAP . . . B 2 20.5 22.382 35.26 1 24.81 ? P2B NAP 301 A 1 HETATM 46 O O1X NAP . . . B 2 19.506 21.935 34.214 1 24.15 ? O1X NAP 301 A 1 HETATM 47 O O2X NAP . . . B 2 20.727 21.409 36.368 1 24.85 ? O2X NAP 301 A 1 HETATM 48 O O3X NAP . . . B 2 20.372 23.809 35.718 1 18.04 ? O3X NAP 301 A 1 # _model_server_stats.io_time_ms 65 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 273 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 48 #