data_3W78
#
_model_server_result.job_id            wXLMxREByxIKiFbrRjqU3Q 
_model_server_result.datetime_utc      '2024-11-26 12:40:17' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3w78 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"K","auth_seq_id":301}' 
#
_entry.id    3W78 
#
_exptl.entry_id    3W78 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              456.344 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'FLAVIN MONONUCLEOTIDE' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            3W78 
_cell.length_a            146.37 
_cell.length_b            146.37 
_cell.length_c            116.2 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3W78 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        154 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 32 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
PISA dimeric 2 author_and_software_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,E,F,I,J,M,O 1 1 
B,G,H,N 2 1,2 
D,K,L,P 3 1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 5_555 x-y,-y,-z+1/3 1 0 0 0 -1 0 0 0 -1 0 0 38.733333 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 G N N 
? 2 I N N 
? 2 K N N 
#
_chem_comp.formula           'C17 H21 N4 O9 P' 
_chem_comp.formula_weight    456.344 
_chem_comp.id                FMN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'FLAVIN MONONUCLEOTIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'RIBOFLAVIN MONOPHOSPHATE' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 FMN sing 146 n n 
N1 C10 FMN doub 147 n n 
C2 O2 FMN doub 148 n n 
C2 N3 FMN sing 149 n n 
N3 C4 FMN sing 150 n n 
N3 HN3 FMN sing 151 n n 
C4 O4 FMN doub 152 n n 
C4 C4A FMN sing 153 n n 
C4A N5 FMN doub 154 n n 
C4A C10 FMN sing 155 n n 
N5 C5A FMN sing 156 n n 
C5A C6 FMN doub 157 n y 
C5A C9A FMN sing 158 n y 
C6 C7 FMN sing 159 n y 
C6 H6 FMN sing 160 n n 
C7 C7M FMN sing 161 n n 
C7 C8 FMN doub 162 n y 
C7M HM71 FMN sing 163 n n 
C7M HM72 FMN sing 164 n n 
C7M HM73 FMN sing 165 n n 
C8 C8M FMN sing 166 n n 
C8 C9 FMN sing 167 n y 
C8M HM81 FMN sing 168 n n 
C8M HM82 FMN sing 169 n n 
C8M HM83 FMN sing 170 n n 
C9 C9A FMN doub 171 n y 
C9 H9 FMN sing 172 n n 
C9A N10 FMN sing 173 n n 
N10 C10 FMN sing 174 n n 
N10 C1' FMN sing 175 n n 
C1' C2' FMN sing 176 n n 
C1' "H1'1" FMN sing 177 n n 
C1' "H1'2" FMN sing 178 n n 
C2' O2' FMN sing 179 n n 
C2' C3' FMN sing 180 n n 
C2' H2' FMN sing 181 n n 
O2' HO2' FMN sing 182 n n 
C3' O3' FMN sing 183 n n 
C3' C4' FMN sing 184 n n 
C3' H3' FMN sing 185 n n 
O3' HO3' FMN sing 186 n n 
C4' O4' FMN sing 187 n n 
C4' C5' FMN sing 188 n n 
C4' H4' FMN sing 189 n n 
O4' HO4' FMN sing 190 n n 
C5' O5' FMN sing 191 n n 
C5' "H5'1" FMN sing 192 n n 
C5' "H5'2" FMN sing 193 n n 
O5' P FMN sing 194 n n 
P O1P FMN doub 195 n n 
P O2P FMN sing 196 n n 
P O3P FMN sing 197 n n 
O2P HOP2 FMN sing 198 n n 
O3P HOP3 FMN sing 199 n n 
#
_atom_sites.entry_id                     3W78 
_atom_sites.fract_transf_matrix[1][1]    0.006832 
_atom_sites.fract_transf_matrix[1][2]    0.003944 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007889 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008606 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 FMN A 1 301 1 FMN FMN . 
F 3 CBD A 1 302 2 CBD CBD . 
G 2 FMN D 1 301 4 FMN FMN . 
H 3 CBD D 1 302 4 CBD CBD . 
I 2 FMN B 1 301 2 FMN FMN . 
J 3 CBD B 1 302 1 CBD CBD . 
K 2 FMN C 1 301 3 FMN FMN . 
L 3 CBD C 1 302 3 CBD CBD . 
M 4 HOH A 1 401 4 HOH HOH . 
M 4 HOH A 2 402 5 HOH HOH . 
M 4 HOH A 3 403 6 HOH HOH . 
M 4 HOH A 4 404 13 HOH HOH . 
M 4 HOH A 5 405 16 HOH HOH . 
M 4 HOH A 6 406 21 HOH HOH . 
N 4 HOH D 1 401 1 HOH HOH . 
N 4 HOH D 2 402 9 HOH HOH . 
N 4 HOH D 3 403 10 HOH HOH . 
N 4 HOH D 4 404 12 HOH HOH . 
N 4 HOH D 5 405 15 HOH HOH . 
N 4 HOH D 6 406 19 HOH HOH . 
O 4 HOH B 1 401 7 HOH HOH . 
O 4 HOH B 2 402 8 HOH HOH . 
O 4 HOH B 3 403 11 HOH HOH . 
O 4 HOH B 4 404 20 HOH HOH . 
P 4 HOH C 1 401 17 HOH HOH . 
P 4 HOH C 2 402 18 HOH HOH . 
P 4 HOH C 3 403 22 HOH HOH . 
P 4 HOH C 4 404 23 HOH HOH . 
P 4 HOH C 5 405 24 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 FMN . . . K 2 -118.958 8.208 31.746 1 76.67 ? N1 FMN 301 C 1 
HETATM 2 C C2 FMN . . . K 2 -117.784 7.6 31.425 1 74.57 ? C2 FMN 301 C 1 
HETATM 3 O O2 FMN . . . K 2 -116.714 8.223 31.606 1 75.07 ? O2 FMN 301 C 1 
HETATM 4 N N3 FMN . . . K 2 -117.725 6.352 30.92 1 71.8 ? N3 FMN 301 C 1 
HETATM 5 C C4 FMN . . . K 2 -118.824 5.619 30.693 1 74.07 ? C4 FMN 301 C 1 
HETATM 6 O O4 FMN . . . K 2 -118.733 4.465 30.221 1 71.27 ? O4 FMN 301 C 1 
HETATM 7 C C4A FMN . . . K 2 -120.15 6.211 31.02 1 75.76 ? C4A FMN 301 C 1 
HETATM 8 N N5 FMN . . . K 2 -121.306 5.536 30.821 1 76.19 ? N5 FMN 301 C 1 
HETATM 9 C C5A FMN . . . K 2 -122.502 6.097 31.123 1 77.74 ? C5A FMN 301 C 1 
HETATM 10 C C6 FMN . . . K 2 -123.666 5.361 30.905 1 77.17 ? C6 FMN 301 C 1 
HETATM 11 C C7 FMN . . . K 2 -124.915 5.897 31.206 1 78.89 ? C7 FMN 301 C 1 
HETATM 12 C C7M FMN . . . K 2 -126.148 5.062 30.948 1 78.23 ? C7M FMN 301 C 1 
HETATM 13 C C8 FMN . . . K 2 -125.002 7.282 31.767 1 78.79 ? C8 FMN 301 C 1 
HETATM 14 C C8M FMN . . . K 2 -126.335 7.902 32.1 1 81.16 ? C8M FMN 301 C 1 
HETATM 15 C C9 FMN . . . K 2 -123.838 8.019 31.99 1 78.44 ? C9 FMN 301 C 1 
HETATM 16 C C9A FMN . . . K 2 -122.582 7.482 31.689 1 77.99 ? C9A FMN 301 C 1 
HETATM 17 N N10 FMN . . . K 2 -121.381 8.213 31.908 1 78.1 ? N10 FMN 301 C 1 
HETATM 18 C C10 FMN . . . K 2 -120.152 7.59 31.576 1 76.56 ? C10 FMN 301 C 1 
HETATM 19 C C1' FMN . . . K 2 -121.389 9.59 32.442 1 80.63 ? C1' FMN 301 C 1 
HETATM 20 C C2' FMN . . . K 2 -121.73 10.574 31.303 1 83.13 ? C2' FMN 301 C 1 
HETATM 21 O O2' FMN . . . K 2 -121.408 9.986 30.029 1 81.79 ? O2' FMN 301 C 1 
HETATM 22 C C3' FMN . . . K 2 -121.055 11.951 31.416 1 83.78 ? C3' FMN 301 C 1 
HETATM 23 O O3' FMN . . . K 2 -121.251 12.502 32.729 1 82.78 ? O3' FMN 301 C 1 
HETATM 24 C C4' FMN . . . K 2 -121.499 12.964 30.335 1 83.57 ? C4' FMN 301 C 1 
HETATM 25 O O4' FMN . . . K 2 -121.348 14.309 30.812 1 81.79 ? O4' FMN 301 C 1 
HETATM 26 C C5' FMN . . . K 2 -122.936 12.804 29.83 1 84.73 ? C5' FMN 301 C 1 
HETATM 27 O O5' FMN . . . K 2 -123.059 13.326 28.502 1 85.68 ? O5' FMN 301 C 1 
HETATM 28 P P FMN . . . K 2 -124.148 14.469 28.14 1 85.37 ? P FMN 301 C 1 
HETATM 29 O O1P FMN . . . K 2 -125.475 13.751 28.217 1 82.29 ? O1P FMN 301 C 1 
HETATM 30 O O2P FMN . . . K 2 -123.81 14.914 26.733 1 81.16 ? O2P FMN 301 C 1 
HETATM 31 O O3P FMN . . . K 2 -123.921 15.523 29.204 1 76.04 ? O3P FMN 301 C 1 
#
_model_server_stats.io_time_ms              20 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    17 
_model_server_stats.query_time_ms           363 
_model_server_stats.encode_time_ms          8 
_model_server_stats.element_count           31 
#