data_3W78
#
_model_server_result.job_id            '_MdWwlclQ0LZeJxcy9pQXQ' 
_model_server_result.datetime_utc      '2024-11-26 12:21:15' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3w78 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":302}' 
#
_entry.id    3W78 
#
_exptl.entry_id    3W78 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              774.157 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'CIBACRON BLUE' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            3W78 
_cell.length_a            146.37 
_cell.length_b            146.37 
_cell.length_c            116.2 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3W78 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        154 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 32 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
PISA dimeric 2 author_and_software_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,E,F,I,J,M,O 1 1 
B,G,H,N 2 1,2 
D,K,L,P 3 1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 5_555 x-y,-y,-z+1/3 1 0 0 0 -1 0 0 0 -1 0 0 38.733333 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 F N N 
? 3 H N N 
? 3 J N N 
? 3 L N N 
#
_chem_comp.formula           'C29 H20 Cl N7 O11 S3' 
_chem_comp.formula_weight    774.157 
_chem_comp.id                CBD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'CIBACRON BLUE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 SA CBD sing 70 n n 
C1 C2 CBD doub 71 n y 
C1 C14 CBD sing 72 n y 
SA O1A CBD doub 73 n n 
SA O2A CBD doub 74 n n 
SA O3A CBD sing 75 n n 
O3A HOA3 CBD sing 76 n n 
C2 N2 CBD sing 77 n n 
C2 C3 CBD sing 78 n y 
N2 HN21 CBD sing 79 n n 
N2 HN22 CBD sing 80 n n 
C3 C4 CBD sing 81 n n 
C3 C12 CBD doub 82 n y 
C4 O4 CBD doub 83 n n 
C4 C5 CBD sing 84 n n 
C5 C6 CBD doub 85 n y 
C5 C10 CBD sing 86 n y 
C6 C7 CBD sing 87 n y 
C6 H6 CBD sing 88 n n 
C7 C8 CBD doub 89 n y 
C7 H7 CBD sing 90 n n 
C8 C9 CBD sing 91 n y 
C8 H8 CBD sing 92 n n 
C9 C10 CBD doub 93 n y 
C9 H9 CBD sing 94 n n 
C10 C11 CBD sing 95 n n 
C11 O11 CBD doub 96 n n 
C11 C12 CBD sing 97 n n 
C12 C13 CBD sing 98 n y 
C13 C14 CBD doub 99 n y 
C13 NB CBD sing 100 n n 
C14 H14 CBD sing 101 n n 
NB CB5 CBD sing 102 n n 
NB HNB CBD sing 103 n n 
CB1 SB CBD sing 104 n n 
CB1 CB2 CBD doub 105 n y 
CB1 CB6 CBD sing 106 n y 
SB O1B CBD doub 107 n n 
SB O2B CBD doub 108 n n 
SB O3B CBD sing 109 n n 
O3B HOB3 CBD sing 110 n n 
CB2 CB3 CBD sing 111 n y 
CB2 NC CBD sing 112 n n 
CB3 CB4 CBD doub 113 n y 
CB3 HB3 CBD sing 114 n n 
CB4 CB5 CBD sing 115 n y 
CB4 HB4 CBD sing 116 n n 
CB5 CB6 CBD doub 117 n y 
CB6 HB6 CBD sing 118 n n 
NC CC6 CBD sing 119 n n 
NC HNC CBD sing 120 n n 
NC1 CC2 CBD doub 121 n y 
NC1 CC6 CBD sing 122 n y 
CC2 CL CBD sing 123 n n 
CC2 NC3 CBD sing 124 n y 
NC3 CC4 CBD doub 125 n y 
CC4 NC5 CBD sing 126 n y 
CC4 ND CBD sing 127 n n 
NC5 CC6 CBD doub 128 n y 
ND CD2 CBD sing 129 n n 
ND HND CBD sing 130 n n 
CD1 SD CBD sing 131 n n 
CD1 CD2 CBD doub 132 n y 
CD1 CD6 CBD sing 133 n y 
SD O1D CBD doub 134 n n 
SD O2D CBD doub 135 n n 
SD O3D CBD sing 136 n n 
O3D HOD3 CBD sing 137 n n 
CD2 CD3 CBD sing 138 n y 
CD3 CD4 CBD doub 139 n y 
CD3 HD3 CBD sing 140 n n 
CD4 CD5 CBD sing 141 n y 
CD4 HD4 CBD sing 142 n n 
CD5 CD6 CBD doub 143 n y 
CD5 HD5 CBD sing 144 n n 
CD6 HD6 CBD sing 145 n n 
#
_atom_sites.entry_id                     3W78 
_atom_sites.fract_transf_matrix[1][1]    0.006832 
_atom_sites.fract_transf_matrix[1][2]    0.003944 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007889 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008606 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 FMN A 1 301 1 FMN FMN . 
F 3 CBD A 1 302 2 CBD CBD . 
G 2 FMN D 1 301 4 FMN FMN . 
H 3 CBD D 1 302 4 CBD CBD . 
I 2 FMN B 1 301 2 FMN FMN . 
J 3 CBD B 1 302 1 CBD CBD . 
K 2 FMN C 1 301 3 FMN FMN . 
L 3 CBD C 1 302 3 CBD CBD . 
M 4 HOH A 1 401 4 HOH HOH . 
M 4 HOH A 2 402 5 HOH HOH . 
M 4 HOH A 3 403 6 HOH HOH . 
M 4 HOH A 4 404 13 HOH HOH . 
M 4 HOH A 5 405 16 HOH HOH . 
M 4 HOH A 6 406 21 HOH HOH . 
N 4 HOH D 1 401 1 HOH HOH . 
N 4 HOH D 2 402 9 HOH HOH . 
N 4 HOH D 3 403 10 HOH HOH . 
N 4 HOH D 4 404 12 HOH HOH . 
N 4 HOH D 5 405 15 HOH HOH . 
N 4 HOH D 6 406 19 HOH HOH . 
O 4 HOH B 1 401 7 HOH HOH . 
O 4 HOH B 2 402 8 HOH HOH . 
O 4 HOH B 3 403 11 HOH HOH . 
O 4 HOH B 4 404 20 HOH HOH . 
P 4 HOH C 1 401 17 HOH HOH . 
P 4 HOH C 2 402 18 HOH HOH . 
P 4 HOH C 3 403 22 HOH HOH . 
P 4 HOH C 4 404 23 HOH HOH . 
P 4 HOH C 5 405 24 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 CBD . . . H 3 -51.539 -10.485 4.149 1 60.63 ? C1 CBD 302 D 1 
HETATM 2 S SA CBD . . . H 3 -50.698 -10.485 2.79 1 62.64 ? SA CBD 302 D 1 
HETATM 3 O O1A CBD . . . H 3 -51.573 -10.378 1.652 1 59.15 ? O1A CBD 302 D 1 
HETATM 4 O O2A CBD . . . H 3 -49.785 -9.373 2.839 1 60.91 ? O2A CBD 302 D 1 
HETATM 5 O O3A CBD . . . H 3 -49.829 -11.87 2.7 1 62.57 ? O3A CBD 302 D 1 
HETATM 6 C C2 CBD . . . H 3 -50.804 -10.665 5.431 1 59.37 ? C2 CBD 302 D 1 
HETATM 7 N N2 CBD . . . H 3 -49.456 -10.831 5.443 1 58.71 ? N2 CBD 302 D 1 
HETATM 8 C C3 CBD . . . H 3 -51.571 -10.662 6.701 1 58.05 ? C3 CBD 302 D 1 
HETATM 9 C C4 CBD . . . H 3 -50.871 -10.844 8.006 1 58.82 ? C4 CBD 302 D 1 
HETATM 10 O O4 CBD . . . H 3 -49.625 -10.997 8.047 1 59.06 ? O4 CBD 302 D 1 
HETATM 11 C C5 CBD . . . H 3 -51.668 -10.832 9.263 1 58.27 ? C5 CBD 302 D 1 
HETATM 12 C C6 CBD . . . H 3 -51.041 -10.991 10.498 1 58.5 ? C6 CBD 302 D 1 
HETATM 13 C C7 CBD . . . H 3 -51.807 -10.98 11.662 1 57.73 ? C7 CBD 302 D 1 
HETATM 14 C C8 CBD . . . H 3 -53.192 -10.806 11.606 1 57.54 ? C8 CBD 302 D 1 
HETATM 15 C C9 CBD . . . H 3 -53.869 -10.639 10.397 1 57.7 ? C9 CBD 302 D 1 
HETATM 16 C C10 CBD . . . H 3 -53.15 -10.647 9.206 1 57.74 ? C10 CBD 302 D 1 
HETATM 17 C C11 CBD . . . H 3 -53.844 -10.471 7.897 1 57.3 ? C11 CBD 302 D 1 
HETATM 18 O O11 CBD . . . H 3 -55.085 -10.311 7.865 1 57.1 ? O11 CBD 302 D 1 
HETATM 19 C C12 CBD . . . H 3 -53.049 -10.475 6.632 1 57.29 ? C12 CBD 302 D 1 
HETATM 20 C C13 CBD . . . H 3 -53.706 -10.309 5.297 1 57.31 ? C13 CBD 302 D 1 
HETATM 21 C C14 CBD . . . H 3 -52.928 -10.31 4.136 1 58.57 ? C14 CBD 302 D 1 
HETATM 22 N NB CBD . . . H 3 -55.052 -10.117 5.241 1 57.94 ? NB CBD 302 D 1 
HETATM 23 C CB1 CBD . . . H 3 -56.619 -12.359 2.776 1 60.52 ? CB1 CBD 302 D 1 
HETATM 24 S SB CBD . . . H 3 -56.222 -13.639 1.906 1 63.2 ? SB CBD 302 D 1 
HETATM 25 O O1B CBD . . . H 3 -56.725 -14.828 2.541 1 64.2 ? O1B CBD 302 D 1 
HETATM 26 O O2B CBD . . . H 3 -56.783 -13.525 0.589 1 63.89 ? O2B CBD 302 D 1 
HETATM 27 O O3B CBD . . . H 3 -54.591 -13.725 1.785 1 62.87 ? O3B CBD 302 D 1 
HETATM 28 C CB2 CBD . . . H 3 -57.985 -11.754 2.705 1 59.47 ? CB2 CBD 302 D 1 
HETATM 29 C CB3 CBD . . . H 3 -58.238 -10.631 3.494 1 58.6 ? CB3 CBD 302 D 1 
HETATM 30 C CB4 CBD . . . H 3 -57.24 -10.116 4.326 1 59.55 ? CB4 CBD 302 D 1 
HETATM 31 C CB5 CBD . . . H 3 -55.959 -10.683 4.397 1 59.7 ? CB5 CBD 302 D 1 
HETATM 32 C CB6 CBD . . . H 3 -55.66 -11.805 3.624 1 59.93 ? CB6 CBD 302 D 1 
HETATM 33 N NC CBD . . . H 3 -58.92 -12.298 1.877 1 60.2 ? NC CBD 302 D 1 
HETATM 34 N NC1 CBD . . . H 3 -60.991 -12.659 0.896 1 63.88 ? NC1 CBD 302 D 1 
HETATM 35 C CC2 CBD . . . H 3 -62.341 -12.59 0.879 1 66.17 ? CC2 CBD 302 D 1 
HETATM 36 CL CL CBD . . . H 3 -63.283 -13.202 -0.524 1 74.18 ? CL CBD 302 D 1 
HETATM 37 N NC3 CBD . . . H 3 -62.993 -12.054 1.93 1 66.32 ? NC3 CBD 302 D 1 
HETATM 38 C CC4 CBD . . . H 3 -62.31 -11.578 2.995 1 63.98 ? CC4 CBD 302 D 1 
HETATM 39 N NC5 CBD . . . H 3 -60.948 -11.651 3.009 1 63.41 ? NC5 CBD 302 D 1 
HETATM 40 C CC6 CBD . . . H 3 -60.279 -12.194 1.952 1 62.17 ? CC6 CBD 302 D 1 
HETATM 41 N ND CBD . . . H 3 -63.059 -11.063 4.003 1 62.23 ? ND CBD 302 D 1 
HETATM 42 C CD1 CBD . . . H 3 -63.281 -8.957 5.271 1 60.07 ? CD1 CBD 302 D 1 
HETATM 43 S SD CBD . . . H 3 -64.445 -8.411 4.319 1 58.18 ? SD CBD 302 D 1 
HETATM 44 O O1D CBD . . . H 3 -63.928 -8.263 2.987 1 58.55 ? O1D CBD 302 D 1 
HETATM 45 O O2D CBD . . . H 3 -65.549 -9.327 4.313 1 58.53 ? O2D CBD 302 D 1 
HETATM 46 O O3D CBD . . . H 3 -64.962 -6.963 4.868 1 59.08 ? O3D CBD 302 D 1 
HETATM 47 C CD2 CBD . . . H 3 -62.636 -10.282 5.028 1 61.01 ? CD2 CBD 302 D 1 
HETATM 48 C CD3 CBD . . . H 3 -61.629 -10.709 5.898 1 62.05 ? CD3 CBD 302 D 1 
HETATM 49 C CD4 CBD . . . H 3 -61.218 -9.896 6.955 1 60.65 ? CD4 CBD 302 D 1 
HETATM 50 C CD5 CBD . . . H 3 -61.817 -8.653 7.173 1 60.34 ? CD5 CBD 302 D 1 
HETATM 51 C CD6 CBD . . . H 3 -62.838 -8.183 6.345 1 60.04 ? CD6 CBD 302 D 1 
#
_model_server_stats.io_time_ms              18 
_model_server_stats.parse_time_ms           34 
_model_server_stats.create_model_time_ms    11 
_model_server_stats.query_time_ms           259 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           51 
#