data_3W78
#
_model_server_result.job_id            4x0oSznJ5xPDH5p8uB5X8g 
_model_server_result.datetime_utc      '2024-10-13 20:24:08' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3w78 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":302}' 
#
_entry.id    3W78 
#
_exptl.entry_id    3W78 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              774.157 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'CIBACRON BLUE' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            3W78 
_cell.length_a            146.37 
_cell.length_b            146.37 
_cell.length_c            116.2 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3W78 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        154 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 32 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
PISA dimeric 2 author_and_software_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,E,F,I,J,M,O 1 1 
B,G,H,N 2 1,2 
D,K,L,P 3 1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 5_555 x-y,-y,-z+1/3 1 0 0 0 -1 0 0 0 -1 0 0 38.733333 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 F N N 
? 3 H N N 
? 3 J N N 
? 3 L N N 
#
_chem_comp.formula           'C29 H20 Cl N7 O11 S3' 
_chem_comp.formula_weight    774.157 
_chem_comp.id                CBD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'CIBACRON BLUE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 SA CBD sing 70 n n 
C1 C2 CBD doub 71 n y 
C1 C14 CBD sing 72 n y 
SA O1A CBD doub 73 n n 
SA O2A CBD doub 74 n n 
SA O3A CBD sing 75 n n 
O3A HOA3 CBD sing 76 n n 
C2 N2 CBD sing 77 n n 
C2 C3 CBD sing 78 n y 
N2 HN21 CBD sing 79 n n 
N2 HN22 CBD sing 80 n n 
C3 C4 CBD sing 81 n n 
C3 C12 CBD doub 82 n y 
C4 O4 CBD doub 83 n n 
C4 C5 CBD sing 84 n n 
C5 C6 CBD doub 85 n y 
C5 C10 CBD sing 86 n y 
C6 C7 CBD sing 87 n y 
C6 H6 CBD sing 88 n n 
C7 C8 CBD doub 89 n y 
C7 H7 CBD sing 90 n n 
C8 C9 CBD sing 91 n y 
C8 H8 CBD sing 92 n n 
C9 C10 CBD doub 93 n y 
C9 H9 CBD sing 94 n n 
C10 C11 CBD sing 95 n n 
C11 O11 CBD doub 96 n n 
C11 C12 CBD sing 97 n n 
C12 C13 CBD sing 98 n y 
C13 C14 CBD doub 99 n y 
C13 NB CBD sing 100 n n 
C14 H14 CBD sing 101 n n 
NB CB5 CBD sing 102 n n 
NB HNB CBD sing 103 n n 
CB1 SB CBD sing 104 n n 
CB1 CB2 CBD doub 105 n y 
CB1 CB6 CBD sing 106 n y 
SB O1B CBD doub 107 n n 
SB O2B CBD doub 108 n n 
SB O3B CBD sing 109 n n 
O3B HOB3 CBD sing 110 n n 
CB2 CB3 CBD sing 111 n y 
CB2 NC CBD sing 112 n n 
CB3 CB4 CBD doub 113 n y 
CB3 HB3 CBD sing 114 n n 
CB4 CB5 CBD sing 115 n y 
CB4 HB4 CBD sing 116 n n 
CB5 CB6 CBD doub 117 n y 
CB6 HB6 CBD sing 118 n n 
NC CC6 CBD sing 119 n n 
NC HNC CBD sing 120 n n 
NC1 CC2 CBD doub 121 n y 
NC1 CC6 CBD sing 122 n y 
CC2 CL CBD sing 123 n n 
CC2 NC3 CBD sing 124 n y 
NC3 CC4 CBD doub 125 n y 
CC4 NC5 CBD sing 126 n y 
CC4 ND CBD sing 127 n n 
NC5 CC6 CBD doub 128 n y 
ND CD2 CBD sing 129 n n 
ND HND CBD sing 130 n n 
CD1 SD CBD sing 131 n n 
CD1 CD2 CBD doub 132 n y 
CD1 CD6 CBD sing 133 n y 
SD O1D CBD doub 134 n n 
SD O2D CBD doub 135 n n 
SD O3D CBD sing 136 n n 
O3D HOD3 CBD sing 137 n n 
CD2 CD3 CBD sing 138 n y 
CD3 CD4 CBD doub 139 n y 
CD3 HD3 CBD sing 140 n n 
CD4 CD5 CBD sing 141 n y 
CD4 HD4 CBD sing 142 n n 
CD5 CD6 CBD doub 143 n y 
CD5 HD5 CBD sing 144 n n 
CD6 HD6 CBD sing 145 n n 
#
_atom_sites.entry_id                     3W78 
_atom_sites.fract_transf_matrix[1][1]    0.006832 
_atom_sites.fract_transf_matrix[1][2]    0.003944 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007889 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008606 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 FMN A 1 301 1 FMN FMN . 
F 3 CBD A 1 302 2 CBD CBD . 
G 2 FMN D 1 301 4 FMN FMN . 
H 3 CBD D 1 302 4 CBD CBD . 
I 2 FMN B 1 301 2 FMN FMN . 
J 3 CBD B 1 302 1 CBD CBD . 
K 2 FMN C 1 301 3 FMN FMN . 
L 3 CBD C 1 302 3 CBD CBD . 
M 4 HOH A 1 401 4 HOH HOH . 
M 4 HOH A 2 402 5 HOH HOH . 
M 4 HOH A 3 403 6 HOH HOH . 
M 4 HOH A 4 404 13 HOH HOH . 
M 4 HOH A 5 405 16 HOH HOH . 
M 4 HOH A 6 406 21 HOH HOH . 
N 4 HOH D 1 401 1 HOH HOH . 
N 4 HOH D 2 402 9 HOH HOH . 
N 4 HOH D 3 403 10 HOH HOH . 
N 4 HOH D 4 404 12 HOH HOH . 
N 4 HOH D 5 405 15 HOH HOH . 
N 4 HOH D 6 406 19 HOH HOH . 
O 4 HOH B 1 401 7 HOH HOH . 
O 4 HOH B 2 402 8 HOH HOH . 
O 4 HOH B 3 403 11 HOH HOH . 
O 4 HOH B 4 404 20 HOH HOH . 
P 4 HOH C 1 401 17 HOH HOH . 
P 4 HOH C 2 402 18 HOH HOH . 
P 4 HOH C 3 403 22 HOH HOH . 
P 4 HOH C 4 404 23 HOH HOH . 
P 4 HOH C 5 405 24 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 CBD . . . J 3 -88.01 39.462 17.545 1 66.07 ? C1 CBD 302 B 1 
HETATM 2 S SA CBD . . . J 3 -87.242 40.72 18.182 1 69.34 ? SA CBD 302 B 1 
HETATM 3 O O1A CBD . . . J 3 -85.844 40.403 18.315 1 70.49 ? O1A CBD 302 B 1 
HETATM 4 O O2A CBD . . . J 3 -87.357 41.874 17.335 1 68.04 ? O2A CBD 302 B 1 
HETATM 5 O O3A CBD . . . J 3 -87.839 41.061 19.67 1 69.38 ? O3A CBD 302 B 1 
HETATM 6 C C2 CBD . . . J 3 -88.879 39.626 16.342 1 63.53 ? C2 CBD 302 B 1 
HETATM 7 N N2 CBD . . . J 3 -89.055 40.839 15.757 1 63.24 ? N2 CBD 302 B 1 
HETATM 8 C C3 CBD . . . J 3 -89.564 38.428 15.78 1 61.65 ? C3 CBD 302 B 1 
HETATM 9 C C4 CBD . . . J 3 -90.442 38.543 14.582 1 61.56 ? C4 CBD 302 B 1 
HETATM 10 O O4 CBD . . . J 3 -90.61 39.656 14.032 1 61.72 ? O4 CBD 302 B 1 
HETATM 11 C C5 CBD . . . J 3 -91.109 37.321 14.042 1 61.27 ? C5 CBD 302 B 1 
HETATM 12 C C6 CBD . . . J 3 -91.933 37.393 12.918 1 60.05 ? C6 CBD 302 B 1 
HETATM 13 C C7 CBD . . . J 3 -92.55 36.235 12.441 1 60.23 ? C7 CBD 302 B 1 
HETATM 14 C C8 CBD . . . J 3 -92.35 34.996 13.057 1 61.96 ? C8 CBD 302 B 1 
HETATM 15 C C9 CBD . . . J 3 -91.533 34.869 14.184 1 61.34 ? C9 CBD 302 B 1 
HETATM 16 C C10 CBD . . . J 3 -90.901 35.997 14.703 1 60.5 ? C10 CBD 302 B 1 
HETATM 17 C C11 CBD . . . J 3 -90.026 35.888 15.9 1 61.02 ? C11 CBD 302 B 1 
HETATM 18 O O11 CBD . . . J 3 -89.856 34.772 16.44 1 61.94 ? O11 CBD 302 B 1 
HETATM 19 C C12 CBD . . . J 3 -89.354 37.109 16.439 1 62.86 ? C12 CBD 302 B 1 
HETATM 20 C C13 CBD . . . J 3 -88.47 37.033 17.642 1 66.15 ? C13 CBD 302 B 1 
HETATM 21 C C14 CBD . . . J 3 -87.844 38.194 18.123 1 65.99 ? C14 CBD 302 B 1 
HETATM 22 N NB CBD . . . J 3 -88.276 35.815 18.221 1 69.77 ? NB CBD 302 B 1 
HETATM 23 C CB1 CBD . . . J 3 -88.721 36.172 21.84 1 79.81 ? CB1 CBD 302 B 1 
HETATM 24 S SB CBD . . . J 3 -89.245 37.276 22.87 1 80.47 ? SB CBD 302 B 1 
HETATM 25 O O1B CBD . . . J 3 -90.632 37.026 23.149 1 80.13 ? O1B CBD 302 B 1 
HETATM 26 O O2B CBD . . . J 3 -88.484 37.217 24.088 1 78.56 ? O2B CBD 302 B 1 
HETATM 27 O O3B CBD . . . J 3 -89.071 38.765 22.208 1 80.16 ? O3B CBD 302 B 1 
HETATM 28 C CB2 CBD . . . J 3 -88.238 34.834 22.294 1 81.03 ? CB2 CBD 302 B 1 
HETATM 29 C CB3 CBD . . . J 3 -87.792 33.932 21.324 1 79.52 ? CB3 CBD 302 B 1 
HETATM 30 C CB4 CBD . . . J 3 -87.818 34.282 19.971 1 77.37 ? CB4 CBD 302 B 1 
HETATM 31 C CB5 CBD . . . J 3 -88.275 35.535 19.548 1 76.33 ? CB5 CBD 302 B 1 
HETATM 32 C CB6 CBD . . . J 3 -88.727 36.467 20.482 1 78.36 ? CB6 CBD 302 B 1 
HETATM 33 N NC CBD . . . J 3 -88.233 34.561 23.627 1 83.59 ? NC CBD 302 B 1 
HETATM 34 N NC1 CBD . . . J 3 -87.979 33.355 25.588 1 88.87 ? NC1 CBD 302 B 1 
HETATM 35 C CC2 CBD . . . J 3 -87.926 32.193 26.276 1 90.6 ? CC2 CBD 302 B 1 
HETATM 36 CL CL CBD . . . J 3 -87.641 32.229 28.049 1 99.85 ? CL CBD 302 B 1 
HETATM 37 N NC3 CBD . . . J 3 -88.09 31.015 25.627 1 88.82 ? NC3 CBD 302 B 1 
HETATM 38 C CC4 CBD . . . J 3 -88.303 30.995 24.288 1 86.31 ? CC4 CBD 302 B 1 
HETATM 39 N NC5 CBD . . . J 3 -88.358 32.17 23.604 1 88 ? NC5 CBD 302 B 1 
HETATM 40 C CC6 CBD . . . J 3 -88.191 33.354 24.25 1 86.15 ? CC6 CBD 302 B 1 
HETATM 41 N ND CBD . . . J 3 -88.469 29.794 23.674 1 83.89 ? ND CBD 302 B 1 
HETATM 42 C CD1 CBD . . . J 3 -87.309 28.641 21.809 1 80.03 ? CD1 CBD 302 B 1 
HETATM 43 S SD CBD . . . J 3 -86.298 27.874 22.784 1 80.36 ? SD CBD 302 B 1 
HETATM 44 O O1D CBD . . . J 3 -85.469 28.802 23.504 1 79.85 ? O1D CBD 302 B 1 
HETATM 45 O O2D CBD . . . J 3 -87.056 27.089 23.719 1 83.26 ? O2D CBD 302 B 1 
HETATM 46 O O3D CBD . . . J 3 -85.355 26.873 21.904 1 83.39 ? O3D CBD 302 B 1 
HETATM 47 C CD2 CBD . . . J 3 -88.349 29.575 22.339 1 81.12 ? CD2 CBD 302 B 1 
HETATM 48 C CD3 CBD . . . J 3 -89.209 30.201 21.433 1 80.57 ? CD3 CBD 302 B 1 
HETATM 49 C CD4 CBD . . . J 3 -89.079 29.966 20.063 1 79.09 ? CD4 CBD 302 B 1 
HETATM 50 C CD5 CBD . . . J 3 -88.104 29.095 19.574 1 76.38 ? CD5 CBD 302 B 1 
HETATM 51 C CD6 CBD . . . J 3 -87.225 28.435 20.432 1 75.84 ? CD6 CBD 302 B 1 
#
_model_server_stats.io_time_ms              76 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    9 
_model_server_stats.query_time_ms           277 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           51 
#