data_3W79 # _model_server_result.job_id O0fayaQJLULF_MZdO3ZxhA _model_server_result.datetime_utc '2024-11-26 16:27:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3w79 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":301}' # _entry.id 3W79 # _exptl.entry_id 3W79 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 456.344 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN MONONUCLEOTIDE' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 115.72 _cell.angle_gamma 90 _cell.entry_id 3W79 _cell.length_a 191.144 _cell.length_b 56.567 _cell.length_c 105.096 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3W79 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,G,H,M,N 1 1 C,D,I,J,K,L,O,P 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 G N N ? 2 I N N ? 2 K N N # _chem_comp.formula 'C17 H21 N4 O9 P' _chem_comp.formula_weight 456.344 _chem_comp.id FMN _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN MONONUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'RIBOFLAVIN MONOPHOSPHATE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 FMN sing 70 n n N1 C10 FMN doub 71 n n C2 O2 FMN doub 72 n n C2 N3 FMN sing 73 n n N3 C4 FMN sing 74 n n N3 HN3 FMN sing 75 n n C4 O4 FMN doub 76 n n C4 C4A FMN sing 77 n n C4A N5 FMN doub 78 n n C4A C10 FMN sing 79 n n N5 C5A FMN sing 80 n n C5A C6 FMN doub 81 n y C5A C9A FMN sing 82 n y C6 C7 FMN sing 83 n y C6 H6 FMN sing 84 n n C7 C7M FMN sing 85 n n C7 C8 FMN doub 86 n y C7M HM71 FMN sing 87 n n C7M HM72 FMN sing 88 n n C7M HM73 FMN sing 89 n n C8 C8M FMN sing 90 n n C8 C9 FMN sing 91 n y C8M HM81 FMN sing 92 n n C8M HM82 FMN sing 93 n n C8M HM83 FMN sing 94 n n C9 C9A FMN doub 95 n y C9 H9 FMN sing 96 n n C9A N10 FMN sing 97 n n N10 C10 FMN sing 98 n n N10 C1' FMN sing 99 n n C1' C2' FMN sing 100 n n C1' "H1'1" FMN sing 101 n n C1' "H1'2" FMN sing 102 n n C2' O2' FMN sing 103 n n C2' C3' FMN sing 104 n n C2' H2' FMN sing 105 n n O2' HO2' FMN sing 106 n n C3' O3' FMN sing 107 n n C3' C4' FMN sing 108 n n C3' H3' FMN sing 109 n n O3' HO3' FMN sing 110 n n C4' O4' FMN sing 111 n n C4' C5' FMN sing 112 n n C4' H4' FMN sing 113 n n O4' HO4' FMN sing 114 n n C5' O5' FMN sing 115 n n C5' "H5'1" FMN sing 116 n n C5' "H5'2" FMN sing 117 n n O5' P FMN sing 118 n n P O1P FMN doub 119 n n P O2P FMN sing 120 n n P O3P FMN sing 121 n n O2P HOP2 FMN sing 122 n n O3P HOP3 FMN sing 123 n n # _atom_sites.entry_id 3W79 _atom_sites.fract_transf_matrix[1][1] 0.005232 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00252 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017678 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010561 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 FMN A 1 301 2 FMN FMN . F 3 ORI A 1 302 2 ORI ORI . G 2 FMN B 1 301 1 FMN FMN . H 3 ORI B 1 302 1 ORI ORI . I 2 FMN C 1 301 4 FMN FMN . J 3 ORI C 1 302 4 ORI ORI . K 2 FMN D 1 301 3 FMN FMN . L 3 ORI D 1 302 3 ORI ORI . M 4 HOH A 1 401 5 HOH HOH . M 4 HOH A 2 402 6 HOH HOH . M 4 HOH A 3 403 7 HOH HOH . M 4 HOH A 4 404 8 HOH HOH . M 4 HOH A 5 405 11 HOH HOH . M 4 HOH A 6 406 14 HOH HOH . M 4 HOH A 7 407 25 HOH HOH . M 4 HOH A 8 408 28 HOH HOH . M 4 HOH A 9 409 32 HOH HOH . M 4 HOH A 10 410 34 HOH HOH . M 4 HOH A 11 411 36 HOH HOH . N 4 HOH B 1 401 9 HOH HOH . N 4 HOH B 2 402 15 HOH HOH . N 4 HOH B 3 403 16 HOH HOH . N 4 HOH B 4 404 20 HOH HOH . N 4 HOH B 5 405 21 HOH HOH . N 4 HOH B 6 406 22 HOH HOH . N 4 HOH B 7 407 23 HOH HOH . N 4 HOH B 8 408 29 HOH HOH . N 4 HOH B 9 409 30 HOH HOH . N 4 HOH B 10 410 35 HOH HOH . N 4 HOH B 11 411 39 HOH HOH . N 4 HOH B 12 412 40 HOH HOH . O 4 HOH C 1 401 1 HOH HOH . O 4 HOH C 2 402 4 HOH HOH . O 4 HOH C 3 403 10 HOH HOH . O 4 HOH C 4 404 13 HOH HOH . O 4 HOH C 5 405 17 HOH HOH . O 4 HOH C 6 406 24 HOH HOH . O 4 HOH C 7 407 31 HOH HOH . O 4 HOH C 8 408 33 HOH HOH . O 4 HOH C 9 409 37 HOH HOH . O 4 HOH C 10 410 41 HOH HOH . P 4 HOH D 1 401 12 HOH HOH . P 4 HOH D 2 402 19 HOH HOH . P 4 HOH D 3 403 26 HOH HOH . P 4 HOH D 4 404 27 HOH HOH . P 4 HOH D 5 405 38 HOH HOH . P 4 HOH D 6 406 42 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 FMN . . . E 2 49.673 -42.727 26.976 1 26.97 ? N1 FMN 301 A 1 HETATM 2 C C2 FMN . . . E 2 50.76 -42.108 27.585 1 26.16 ? C2 FMN 301 A 1 HETATM 3 O O2 FMN . . . E 2 51.153 -42.514 28.664 1 27.64 ? O2 FMN 301 A 1 HETATM 4 N N3 FMN . . . E 2 51.426 -41.068 26.985 1 26.22 ? N3 FMN 301 A 1 HETATM 5 C C4 FMN . . . E 2 50.987 -40.64 25.737 1 27.16 ? C4 FMN 301 A 1 HETATM 6 O O4 FMN . . . E 2 51.571 -39.715 25.203 1 27.93 ? O4 FMN 301 A 1 HETATM 7 C C4A FMN . . . E 2 49.908 -41.264 25.103 1 26.39 ? C4A FMN 301 A 1 HETATM 8 N N5 FMN . . . E 2 49.457 -40.855 23.883 1 26.5 ? N5 FMN 301 A 1 HETATM 9 C C5A FMN . . . E 2 48.369 -41.466 23.273 1 28.16 ? C5A FMN 301 A 1 HETATM 10 C C6 FMN . . . E 2 47.942 -41.038 22.017 1 26.99 ? C6 FMN 301 A 1 HETATM 11 C C7 FMN . . . E 2 46.84 -41.626 21.383 1 27.26 ? C7 FMN 301 A 1 HETATM 12 C C7M FMN . . . E 2 46.421 -41.111 20.03 1 27.62 ? C7M FMN 301 A 1 HETATM 13 C C8 FMN . . . E 2 46.157 -42.685 22.009 1 27.75 ? C8 FMN 301 A 1 HETATM 14 C C8M FMN . . . E 2 44.957 -43.336 21.38 1 26.07 ? C8M FMN 301 A 1 HETATM 15 C C9 FMN . . . E 2 46.591 -43.135 23.269 1 27.21 ? C9 FMN 301 A 1 HETATM 16 C C9A FMN . . . E 2 47.687 -42.509 23.907 1 28.16 ? C9A FMN 301 A 1 HETATM 17 N N10 FMN . . . E 2 48.159 -42.914 25.131 1 28.58 ? N10 FMN 301 A 1 HETATM 18 C C10 FMN . . . E 2 49.252 -42.313 25.725 1 27.54 ? C10 FMN 301 A 1 HETATM 19 C C1' FMN . . . E 2 47.445 -43.998 25.872 1 30.55 ? C1' FMN 301 A 1 HETATM 20 C C2' FMN . . . E 2 46.142 -43.341 26.434 1 30.59 ? C2' FMN 301 A 1 HETATM 21 O O2' FMN . . . E 2 46.489 -42.141 27.106 1 26.78 ? O2' FMN 301 A 1 HETATM 22 C C3' FMN . . . E 2 45.338 -44.341 27.291 1 28.39 ? C3' FMN 301 A 1 HETATM 23 O O3' FMN . . . E 2 44.858 -45.298 26.376 1 29.21 ? O3' FMN 301 A 1 HETATM 24 C C4' FMN . . . E 2 44.133 -43.778 28.014 1 28.16 ? C4' FMN 301 A 1 HETATM 25 O O4' FMN . . . E 2 43.357 -44.824 28.519 1 27.57 ? O4' FMN 301 A 1 HETATM 26 C C5' FMN . . . E 2 43.225 -42.976 27.083 1 30.37 ? C5' FMN 301 A 1 HETATM 27 O O5' FMN . . . E 2 42.124 -42.444 27.778 1 28.52 ? O5' FMN 301 A 1 HETATM 28 P P FMN . . . E 2 40.657 -43.049 27.595 1 28.14 ? P FMN 301 A 1 HETATM 29 O O1P FMN . . . E 2 40.143 -42.752 26.22 1 25.71 ? O1P FMN 301 A 1 HETATM 30 O O2P FMN . . . E 2 39.767 -42.392 28.599 1 25.27 ? O2P FMN 301 A 1 HETATM 31 O O3P FMN . . . E 2 40.749 -44.55 27.949 1 28.35 ? O3P FMN 301 A 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 24 _model_server_stats.query_time_ms 496 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 31 #