data_3W79
#
_model_server_result.job_id            P4vrvB7CLeZyEVzRM0V2vQ 
_model_server_result.datetime_utc      '2024-10-13 22:18:42' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3w79 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"K","auth_seq_id":301}' 
#
_entry.id    3W79 
#
_exptl.entry_id    3W79 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              456.344 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'FLAVIN MONONUCLEOTIDE' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          115.72 
_cell.angle_gamma         90 
_cell.entry_id            3W79 
_cell.length_a            191.144 
_cell.length_b            56.567 
_cell.length_c            105.096 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3W79 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,E,F,G,H,M,N 1 1 
C,D,I,J,K,L,O,P 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 G N N 
? 2 I N N 
? 2 K N N 
#
_chem_comp.formula           'C17 H21 N4 O9 P' 
_chem_comp.formula_weight    456.344 
_chem_comp.id                FMN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'FLAVIN MONONUCLEOTIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'RIBOFLAVIN MONOPHOSPHATE' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 FMN sing 70 n n 
N1 C10 FMN doub 71 n n 
C2 O2 FMN doub 72 n n 
C2 N3 FMN sing 73 n n 
N3 C4 FMN sing 74 n n 
N3 HN3 FMN sing 75 n n 
C4 O4 FMN doub 76 n n 
C4 C4A FMN sing 77 n n 
C4A N5 FMN doub 78 n n 
C4A C10 FMN sing 79 n n 
N5 C5A FMN sing 80 n n 
C5A C6 FMN doub 81 n y 
C5A C9A FMN sing 82 n y 
C6 C7 FMN sing 83 n y 
C6 H6 FMN sing 84 n n 
C7 C7M FMN sing 85 n n 
C7 C8 FMN doub 86 n y 
C7M HM71 FMN sing 87 n n 
C7M HM72 FMN sing 88 n n 
C7M HM73 FMN sing 89 n n 
C8 C8M FMN sing 90 n n 
C8 C9 FMN sing 91 n y 
C8M HM81 FMN sing 92 n n 
C8M HM82 FMN sing 93 n n 
C8M HM83 FMN sing 94 n n 
C9 C9A FMN doub 95 n y 
C9 H9 FMN sing 96 n n 
C9A N10 FMN sing 97 n n 
N10 C10 FMN sing 98 n n 
N10 C1' FMN sing 99 n n 
C1' C2' FMN sing 100 n n 
C1' "H1'1" FMN sing 101 n n 
C1' "H1'2" FMN sing 102 n n 
C2' O2' FMN sing 103 n n 
C2' C3' FMN sing 104 n n 
C2' H2' FMN sing 105 n n 
O2' HO2' FMN sing 106 n n 
C3' O3' FMN sing 107 n n 
C3' C4' FMN sing 108 n n 
C3' H3' FMN sing 109 n n 
O3' HO3' FMN sing 110 n n 
C4' O4' FMN sing 111 n n 
C4' C5' FMN sing 112 n n 
C4' H4' FMN sing 113 n n 
O4' HO4' FMN sing 114 n n 
C5' O5' FMN sing 115 n n 
C5' "H5'1" FMN sing 116 n n 
C5' "H5'2" FMN sing 117 n n 
O5' P FMN sing 118 n n 
P O1P FMN doub 119 n n 
P O2P FMN sing 120 n n 
P O3P FMN sing 121 n n 
O2P HOP2 FMN sing 122 n n 
O3P HOP3 FMN sing 123 n n 
#
_atom_sites.entry_id                     3W79 
_atom_sites.fract_transf_matrix[1][1]    0.005232 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.00252 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.017678 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010561 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 FMN A 1 301 2 FMN FMN . 
F 3 ORI A 1 302 2 ORI ORI . 
G 2 FMN B 1 301 1 FMN FMN . 
H 3 ORI B 1 302 1 ORI ORI . 
I 2 FMN C 1 301 4 FMN FMN . 
J 3 ORI C 1 302 4 ORI ORI . 
K 2 FMN D 1 301 3 FMN FMN . 
L 3 ORI D 1 302 3 ORI ORI . 
M 4 HOH A 1 401 5 HOH HOH . 
M 4 HOH A 2 402 6 HOH HOH . 
M 4 HOH A 3 403 7 HOH HOH . 
M 4 HOH A 4 404 8 HOH HOH . 
M 4 HOH A 5 405 11 HOH HOH . 
M 4 HOH A 6 406 14 HOH HOH . 
M 4 HOH A 7 407 25 HOH HOH . 
M 4 HOH A 8 408 28 HOH HOH . 
M 4 HOH A 9 409 32 HOH HOH . 
M 4 HOH A 10 410 34 HOH HOH . 
M 4 HOH A 11 411 36 HOH HOH . 
N 4 HOH B 1 401 9 HOH HOH . 
N 4 HOH B 2 402 15 HOH HOH . 
N 4 HOH B 3 403 16 HOH HOH . 
N 4 HOH B 4 404 20 HOH HOH . 
N 4 HOH B 5 405 21 HOH HOH . 
N 4 HOH B 6 406 22 HOH HOH . 
N 4 HOH B 7 407 23 HOH HOH . 
N 4 HOH B 8 408 29 HOH HOH . 
N 4 HOH B 9 409 30 HOH HOH . 
N 4 HOH B 10 410 35 HOH HOH . 
N 4 HOH B 11 411 39 HOH HOH . 
N 4 HOH B 12 412 40 HOH HOH . 
O 4 HOH C 1 401 1 HOH HOH . 
O 4 HOH C 2 402 4 HOH HOH . 
O 4 HOH C 3 403 10 HOH HOH . 
O 4 HOH C 4 404 13 HOH HOH . 
O 4 HOH C 5 405 17 HOH HOH . 
O 4 HOH C 6 406 24 HOH HOH . 
O 4 HOH C 7 407 31 HOH HOH . 
O 4 HOH C 8 408 33 HOH HOH . 
O 4 HOH C 9 409 37 HOH HOH . 
O 4 HOH C 10 410 41 HOH HOH . 
P 4 HOH D 1 401 12 HOH HOH . 
P 4 HOH D 2 402 19 HOH HOH . 
P 4 HOH D 3 403 26 HOH HOH . 
P 4 HOH D 4 404 27 HOH HOH . 
P 4 HOH D 5 405 38 HOH HOH . 
P 4 HOH D 6 406 42 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 FMN . . . K 2 -0.359 -14.457 24.4 1 24.93 ? N1 FMN 301 D 1 
HETATM 2 C C2 FMN . . . K 2 -0.951 -13.943 25.532 1 25.82 ? C2 FMN 301 D 1 
HETATM 3 O O2 FMN . . . K 2 -2.011 -14.443 25.907 1 26.14 ? O2 FMN 301 D 1 
HETATM 4 N N3 FMN . . . K 2 -0.325 -12.878 26.19 1 24.73 ? N3 FMN 301 D 1 
HETATM 5 C C4 FMN . . . K 2 0.895 -12.379 25.714 1 23.46 ? C4 FMN 301 D 1 
HETATM 6 O O4 FMN . . . K 2 1.415 -11.45 26.309 1 21.71 ? O4 FMN 301 D 1 
HETATM 7 C C4A FMN . . . K 2 1.49 -12.938 24.56 1 23.56 ? C4A FMN 301 D 1 
HETATM 8 N N5 FMN . . . K 2 2.681 -12.477 24.037 1 22.96 ? N5 FMN 301 D 1 
HETATM 9 C C5A FMN . . . K 2 3.217 -13.079 22.885 1 26.77 ? C5A FMN 301 D 1 
HETATM 10 C C6 FMN . . . K 2 4.418 -12.624 22.339 1 26.83 ? C6 FMN 301 D 1 
HETATM 11 C C7 FMN . . . K 2 4.962 -13.174 21.187 1 26.63 ? C7 FMN 301 D 1 
HETATM 12 C C7M FMN . . . K 2 6.252 -12.616 20.688 1 24.77 ? C7M FMN 301 D 1 
HETATM 13 C C8 FMN . . . K 2 4.279 -14.223 20.529 1 28.15 ? C8 FMN 301 D 1 
HETATM 14 C C8M FMN . . . K 2 4.777 -14.901 19.291 1 26.12 ? C8M FMN 301 D 1 
HETATM 15 C C9 FMN . . . K 2 3.086 -14.688 21.056 1 27.53 ? C9 FMN 301 D 1 
HETATM 16 C C9A FMN . . . K 2 2.552 -14.13 22.239 1 27.28 ? C9A FMN 301 D 1 
HETATM 17 N N10 FMN . . . K 2 1.349 -14.589 22.784 1 25.46 ? N10 FMN 301 D 1 
HETATM 18 C C10 FMN . . . K 2 0.837 -13.99 23.915 1 23.26 ? C10 FMN 301 D 1 
HETATM 19 C C1' FMN . . . K 2 0.559 -15.664 22.08 1 24.85 ? C1' FMN 301 D 1 
HETATM 20 C C2' FMN . . . K 2 -0.163 -14.928 20.907 1 25.21 ? C2' FMN 301 D 1 
HETATM 21 O O2' FMN . . . K 2 -1.003 -13.863 21.36 1 22.8 ? O2' FMN 301 D 1 
HETATM 22 C C3' FMN . . . K 2 -1.007 -15.911 20.124 1 25.3 ? C3' FMN 301 D 1 
HETATM 23 O O3' FMN . . . K 2 -0.166 -16.89 19.589 1 28.25 ? O3' FMN 301 D 1 
HETATM 24 C C4' FMN . . . K 2 -1.799 -15.311 18.999 1 25.72 ? C4' FMN 301 D 1 
HETATM 25 O O4' FMN . . . K 2 -2.49 -16.367 18.399 1 27.61 ? O4' FMN 301 D 1 
HETATM 26 C C5' FMN . . . K 2 -0.953 -14.548 17.981 1 26.24 ? C5' FMN 301 D 1 
HETATM 27 O O5' FMN . . . K 2 -1.793 -14.057 16.97 1 26.12 ? O5' FMN 301 D 1 
HETATM 28 P P FMN . . . K 2 -1.731 -14.735 15.512 1 30.59 ? P FMN 301 D 1 
HETATM 29 O O1P FMN . . . K 2 -0.32 -14.636 15.053 1 28.32 ? O1P FMN 301 D 1 
HETATM 30 O O2P FMN . . . K 2 -2.73 -14.015 14.654 1 26.05 ? O2P FMN 301 D 1 
HETATM 31 O O3P FMN . . . K 2 -2.054 -16.219 15.604 1 28.42 ? O3P FMN 301 D 1 
#
_model_server_stats.io_time_ms              77 
_model_server_stats.parse_time_ms           30 
_model_server_stats.create_model_time_ms    8 
_model_server_stats.query_time_ms           276 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           31 
#