data_3W79
#
_model_server_result.job_id            LeVrsZ-9PEn04ns1bDSQUQ 
_model_server_result.datetime_utc      '2024-10-13 22:20:02' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3w79 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":302}' 
#
_entry.id    3W79 
#
_exptl.entry_id    3W79 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              328.342 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '4-[(E)-(4-hydroxynaphthalen-1-yl)diazenyl]benzenesulfonic acid' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          115.72 
_cell.angle_gamma         90 
_cell.entry_id            3W79 
_cell.length_a            191.144 
_cell.length_b            56.567 
_cell.length_c            105.096 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3W79 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,E,F,G,H,M,N 1 1 
C,D,I,J,K,L,O,P 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 F N N 
? 3 H N N 
? 3 J N N 
? 3 L N N 
#
_chem_comp.formula           'C16 H12 N2 O4 S' 
_chem_comp.formula_weight    328.342 
_chem_comp.id                ORI 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '4-[(E)-(4-hydroxynaphthalen-1-yl)diazenyl]benzenesulfonic acid' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'Orange I' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
OA1 C4 ORI sing 278 n n 
C6 C7 ORI doub 279 n y 
C6 C5 ORI sing 280 n y 
C4 C5 ORI doub 281 n y 
C4 C3 ORI sing 282 n y 
C7 C8 ORI sing 283 n y 
C5 C10 ORI sing 284 n y 
C3 C2 ORI doub 285 n y 
C8 C9 ORI doub 286 n y 
C10 C9 ORI sing 287 n y 
C10 C1 ORI doub 288 n y 
C2 C1 ORI sing 289 n y 
C1 N1 ORI sing 290 n n 
N1 N2 ORI doub 291 n n 
N2 CB1 ORI sing 292 n n 
CB1 CB2 ORI doub 293 n y 
CB1 CB6 ORI sing 294 n y 
CB2 CB3 ORI sing 295 n y 
CB6 CB5 ORI doub 296 n y 
CB3 CB4 ORI doub 297 n y 
CB5 CB4 ORI sing 298 n y 
CB4 SB ORI sing 299 n n 
OB4 SB ORI doub 300 n n 
SB OB2 ORI doub 301 n n 
SB OB3 ORI sing 302 n n 
CB5 H1 ORI sing 303 n n 
CB6 H2 ORI sing 304 n n 
CB3 H3 ORI sing 305 n n 
CB2 H4 ORI sing 306 n n 
C2 H5 ORI sing 307 n n 
C3 H6 ORI sing 308 n n 
OA1 H7 ORI sing 309 n n 
C6 H8 ORI sing 310 n n 
C7 H9 ORI sing 311 n n 
C8 H10 ORI sing 312 n n 
C9 H11 ORI sing 313 n n 
OB3 H12 ORI sing 314 n n 
#
_atom_sites.entry_id                     3W79 
_atom_sites.fract_transf_matrix[1][1]    0.005232 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.00252 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.017678 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010561 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 FMN A 1 301 2 FMN FMN . 
F 3 ORI A 1 302 2 ORI ORI . 
G 2 FMN B 1 301 1 FMN FMN . 
H 3 ORI B 1 302 1 ORI ORI . 
I 2 FMN C 1 301 4 FMN FMN . 
J 3 ORI C 1 302 4 ORI ORI . 
K 2 FMN D 1 301 3 FMN FMN . 
L 3 ORI D 1 302 3 ORI ORI . 
M 4 HOH A 1 401 5 HOH HOH . 
M 4 HOH A 2 402 6 HOH HOH . 
M 4 HOH A 3 403 7 HOH HOH . 
M 4 HOH A 4 404 8 HOH HOH . 
M 4 HOH A 5 405 11 HOH HOH . 
M 4 HOH A 6 406 14 HOH HOH . 
M 4 HOH A 7 407 25 HOH HOH . 
M 4 HOH A 8 408 28 HOH HOH . 
M 4 HOH A 9 409 32 HOH HOH . 
M 4 HOH A 10 410 34 HOH HOH . 
M 4 HOH A 11 411 36 HOH HOH . 
N 4 HOH B 1 401 9 HOH HOH . 
N 4 HOH B 2 402 15 HOH HOH . 
N 4 HOH B 3 403 16 HOH HOH . 
N 4 HOH B 4 404 20 HOH HOH . 
N 4 HOH B 5 405 21 HOH HOH . 
N 4 HOH B 6 406 22 HOH HOH . 
N 4 HOH B 7 407 23 HOH HOH . 
N 4 HOH B 8 408 29 HOH HOH . 
N 4 HOH B 9 409 30 HOH HOH . 
N 4 HOH B 10 410 35 HOH HOH . 
N 4 HOH B 11 411 39 HOH HOH . 
N 4 HOH B 12 412 40 HOH HOH . 
O 4 HOH C 1 401 1 HOH HOH . 
O 4 HOH C 2 402 4 HOH HOH . 
O 4 HOH C 3 403 10 HOH HOH . 
O 4 HOH C 4 404 13 HOH HOH . 
O 4 HOH C 5 405 17 HOH HOH . 
O 4 HOH C 6 406 24 HOH HOH . 
O 4 HOH C 7 407 31 HOH HOH . 
O 4 HOH C 8 408 33 HOH HOH . 
O 4 HOH C 9 409 37 HOH HOH . 
O 4 HOH C 10 410 41 HOH HOH . 
P 4 HOH D 1 401 12 HOH HOH . 
P 4 HOH D 2 402 19 HOH HOH . 
P 4 HOH D 3 403 26 HOH HOH . 
P 4 HOH D 4 404 27 HOH HOH . 
P 4 HOH D 5 405 38 HOH HOH . 
P 4 HOH D 6 406 42 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O OB4 ORI . . . J 3 -5.701 20.083 29.054 1 93.54 ? OB4 ORI 302 C 1 
HETATM 2 S SB ORI . . . J 3 -5.47 18.688 29.541 1 115.82 ? SB ORI 302 C 1 
HETATM 3 O OB2 ORI . . . J 3 -6.774 18.032 29.799 1 116.8 ? OB2 ORI 302 C 1 
HETATM 4 O OB3 ORI . . . J 3 -4.7 18.68 30.813 1 99.79 ? OB3 ORI 302 C 1 
HETATM 5 C CB4 ORI . . . J 3 -4.702 17.858 28.392 1 101.09 ? CB4 ORI 302 C 1 
HETATM 6 C CB5 ORI . . . J 3 -5.127 16.56 28.038 1 91.81 ? CB5 ORI 302 C 1 
HETATM 7 C CB6 ORI . . . J 3 -4.463 15.862 27.036 1 83 ? CB6 ORI 302 C 1 
HETATM 8 C CB3 ORI . . . J 3 -3.608 18.445 27.737 1 86.87 ? CB3 ORI 302 C 1 
HETATM 9 C CB2 ORI . . . J 3 -2.937 17.747 26.746 1 80.27 ? CB2 ORI 302 C 1 
HETATM 10 C CB1 ORI . . . J 3 -3.362 16.453 26.406 1 84.31 ? CB1 ORI 302 C 1 
HETATM 11 N N2 ORI . . . J 3 -2.725 15.736 25.383 1 76.76 ? N2 ORI 302 C 1 
HETATM 12 N N1 ORI . . . J 3 -2.461 16.367 24.341 1 68.78 ? N1 ORI 302 C 1 
HETATM 13 C C1 ORI . . . J 3 -1.885 15.809 23.198 1 59.16 ? C1 ORI 302 C 1 
HETATM 14 C C2 ORI . . . J 3 -2.417 14.608 22.744 1 52.54 ? C2 ORI 302 C 1 
HETATM 15 C C3 ORI . . . J 3 -1.909 13.988 21.61 1 52.28 ? C3 ORI 302 C 1 
HETATM 16 C C4 ORI . . . J 3 -0.87 14.529 20.833 1 52.21 ? C4 ORI 302 C 1 
HETATM 17 O OA1 ORI . . . J 3 -0.429 13.855 19.71 1 45.27 ? OA1 ORI 302 C 1 
HETATM 18 C C5 ORI . . . J 3 -0.252 15.831 21.231 1 53.92 ? C5 ORI 302 C 1 
HETATM 19 C C10 ORI . . . J 3 -0.783 16.496 22.448 1 58.05 ? C10 ORI 302 C 1 
HETATM 20 C C6 ORI . . . J 3 0.79 16.431 20.502 1 55.57 ? C6 ORI 302 C 1 
HETATM 21 C C7 ORI . . . J 3 1.324 17.643 20.939 1 55.5 ? C7 ORI 302 C 1 
HETATM 22 C C8 ORI . . . J 3 0.825 18.271 22.095 1 57.11 ? C8 ORI 302 C 1 
HETATM 23 C C9 ORI . . . J 3 -0.217 17.719 22.843 1 58.67 ? C9 ORI 302 C 1 
#
_model_server_stats.io_time_ms              177 
_model_server_stats.parse_time_ms           221 
_model_server_stats.create_model_time_ms    51 
_model_server_stats.query_time_ms           315 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           23 
#