data_3W7M # _model_server_result.job_id JyL6jaXVhAFNWBPAp2rQgw _model_server_result.datetime_utc '2024-12-01 10:12:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3w7m # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"W","auth_seq_id":405}' # _entry.id 3W7M # _exptl.entry_id 3W7M _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 17 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3W7M _cell.length_a 68.224 _cell.length_b 72.009 _cell.length_c 129.644 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3W7M _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N ? 3 F N N ? 3 G N N ? 3 H N N ? 3 I N N ? 3 J N N ? 3 K N N ? 3 L N N ? 3 M N N ? 3 N N N ? 3 O N N ? 3 P N N ? 3 T N N ? 3 U N N ? 3 V N N ? 3 W N N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 2 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 1 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 2 _struct_conn.ptnr2_auth_asym_id B _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 1 _struct_conn.ptnr2_symmetry 1_455 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.67 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 183 n n C1 C2 GOL sing 184 n n C1 H11 GOL sing 185 n n C1 H12 GOL sing 186 n n O1 HO1 GOL sing 187 n n C2 O2 GOL sing 188 n n C2 C3 GOL sing 189 n n C2 H2 GOL sing 190 n n O2 HO2 GOL sing 191 n n C3 O3 GOL sing 192 n n C3 H31 GOL sing 193 n n C3 H32 GOL sing 194 n n O3 HO3 GOL sing 195 n n # _atom_sites.entry_id 3W7M _atom_sites.fract_transf_matrix[1][1] 0.014658 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013887 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007713 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 W7M A 1 401 1 W7M DRG . D 3 GOL A 1 402 1 GOL GOL . E 3 GOL A 1 403 4 GOL GOL . F 3 GOL A 1 404 5 GOL GOL . G 3 GOL A 1 405 6 GOL GOL . H 3 GOL A 1 406 8 GOL GOL . I 3 GOL A 1 407 9 GOL GOL . J 3 GOL A 1 408 10 GOL GOL . K 3 GOL A 1 409 11 GOL GOL . L 3 GOL A 1 410 12 GOL GOL . M 3 GOL A 1 411 13 GOL GOL . N 3 GOL A 1 412 14 GOL GOL . O 3 GOL A 1 413 15 GOL GOL . P 3 GOL A 1 414 17 GOL GOL . Q 4 FMN A 1 415 1 FMN FMN . R 5 NCO A 1 416 351 NCO NCO . S 2 W7M B 1 401 2 W7M DRG . T 3 GOL B 1 402 2 GOL GOL . U 3 GOL B 1 403 3 GOL GOL . V 3 GOL B 1 404 7 GOL GOL . W 3 GOL B 1 405 16 GOL GOL . X 4 FMN B 1 406 2 FMN FMN . Y 6 HOH A 1 501 1 HOH HOH . Y 6 HOH A 2 502 2 HOH HOH . Y 6 HOH A 3 503 5 HOH HOH . Y 6 HOH A 4 504 7 HOH HOH . Y 6 HOH A 5 505 8 HOH HOH . Y 6 HOH A 6 506 11 HOH HOH . Y 6 HOH A 7 507 12 HOH HOH . Y 6 HOH A 8 508 13 HOH HOH . Y 6 HOH A 9 509 21 HOH HOH . Y 6 HOH A 10 510 22 HOH HOH . Y 6 HOH A 11 511 23 HOH HOH . Y 6 HOH A 12 512 24 HOH HOH . Y 6 HOH A 13 513 25 HOH HOH . Y 6 HOH A 14 514 28 HOH HOH . Y 6 HOH A 15 515 29 HOH HOH . Y 6 HOH A 16 516 30 HOH HOH . Y 6 HOH A 17 517 31 HOH HOH . Y 6 HOH A 18 518 32 HOH HOH . Y 6 HOH A 19 519 33 HOH HOH . Y 6 HOH A 20 520 34 HOH HOH . Y 6 HOH A 21 521 36 HOH HOH . Y 6 HOH A 22 522 44 HOH HOH . Y 6 HOH A 23 523 46 HOH HOH . Y 6 HOH A 24 524 48 HOH HOH . Y 6 HOH A 25 525 49 HOH HOH . Y 6 HOH A 26 526 50 HOH HOH . Y 6 HOH A 27 527 52 HOH HOH . Y 6 HOH A 28 528 54 HOH HOH . Y 6 HOH A 29 529 56 HOH HOH . Y 6 HOH A 30 530 57 HOH HOH . Y 6 HOH A 31 531 58 HOH HOH . Y 6 HOH A 32 532 63 HOH HOH . Y 6 HOH A 33 533 65 HOH HOH . Y 6 HOH A 34 534 70 HOH HOH . Y 6 HOH A 35 535 71 HOH HOH . Y 6 HOH A 36 536 74 HOH HOH . Y 6 HOH A 37 537 76 HOH HOH . Y 6 HOH A 38 538 78 HOH HOH . Y 6 HOH A 39 539 79 HOH HOH . Y 6 HOH A 40 540 82 HOH HOH . Y 6 HOH A 41 541 84 HOH HOH . Y 6 HOH A 42 542 88 HOH HOH . Y 6 HOH A 43 543 89 HOH HOH . Y 6 HOH A 44 544 90 HOH HOH . Y 6 HOH A 45 545 93 HOH HOH . Y 6 HOH A 46 546 95 HOH HOH . Y 6 HOH A 47 547 96 HOH HOH . Y 6 HOH A 48 548 97 HOH HOH . Y 6 HOH A 49 549 98 HOH HOH . Y 6 HOH A 50 550 99 HOH HOH . Y 6 HOH A 51 551 100 HOH HOH . Y 6 HOH A 52 552 101 HOH HOH . Y 6 HOH A 53 553 102 HOH HOH . Y 6 HOH A 54 554 103 HOH HOH . Y 6 HOH A 55 555 104 HOH HOH . Y 6 HOH A 56 556 106 HOH HOH . Y 6 HOH A 57 557 107 HOH HOH . Y 6 HOH A 58 558 108 HOH HOH . Y 6 HOH A 59 559 110 HOH HOH . Y 6 HOH A 60 560 111 HOH HOH . Y 6 HOH A 61 561 113 HOH HOH . Y 6 HOH A 62 562 114 HOH HOH . Y 6 HOH A 63 563 118 HOH HOH . Y 6 HOH A 64 564 119 HOH HOH . Y 6 HOH A 65 565 120 HOH HOH . Y 6 HOH A 66 566 124 HOH HOH . Y 6 HOH A 67 567 125 HOH HOH . Y 6 HOH A 68 568 129 HOH HOH . Y 6 HOH A 69 569 130 HOH HOH . Y 6 HOH A 70 570 131 HOH HOH . Y 6 HOH A 71 571 134 HOH HOH . Y 6 HOH A 72 572 138 HOH HOH . Y 6 HOH A 73 573 140 HOH HOH . Y 6 HOH A 74 574 141 HOH HOH . Y 6 HOH A 75 575 144 HOH HOH . Y 6 HOH A 76 576 145 HOH HOH . Y 6 HOH A 77 577 146 HOH HOH . Y 6 HOH A 78 578 149 HOH HOH . Y 6 HOH A 79 579 150 HOH HOH . Y 6 HOH A 80 580 151 HOH HOH . Y 6 HOH A 81 581 156 HOH HOH . Y 6 HOH A 82 582 160 HOH HOH . Y 6 HOH A 83 583 161 HOH HOH . Y 6 HOH A 84 584 165 HOH HOH . Y 6 HOH A 85 585 167 HOH HOH . Y 6 HOH A 86 586 169 HOH HOH . Y 6 HOH A 87 587 170 HOH HOH . Y 6 HOH A 88 588 172 HOH HOH . Y 6 HOH A 89 589 173 HOH HOH . Y 6 HOH A 90 590 174 HOH HOH . Y 6 HOH A 91 591 177 HOH HOH . Y 6 HOH A 92 592 181 HOH HOH . Y 6 HOH A 93 593 182 HOH HOH . Y 6 HOH A 94 594 183 HOH HOH . Y 6 HOH A 95 595 184 HOH HOH . Y 6 HOH A 96 596 187 HOH HOH . Y 6 HOH A 97 597 188 HOH HOH . Y 6 HOH A 98 598 200 HOH HOH . Y 6 HOH A 99 599 203 HOH HOH . Y 6 HOH A 100 600 204 HOH HOH . Y 6 HOH A 101 601 207 HOH HOH . Y 6 HOH A 102 602 208 HOH HOH . Y 6 HOH A 103 603 209 HOH HOH . Y 6 HOH A 104 604 210 HOH HOH . Y 6 HOH A 105 605 214 HOH HOH . Y 6 HOH A 106 606 215 HOH HOH . Y 6 HOH A 107 607 216 HOH HOH . Y 6 HOH A 108 608 220 HOH HOH . Y 6 HOH A 109 609 221 HOH HOH . Y 6 HOH A 110 610 222 HOH HOH . Y 6 HOH A 111 611 223 HOH HOH . Y 6 HOH A 112 612 224 HOH HOH . Y 6 HOH A 113 613 225 HOH HOH . Y 6 HOH A 114 614 227 HOH HOH . Y 6 HOH A 115 615 228 HOH HOH . Y 6 HOH A 116 616 231 HOH HOH . Y 6 HOH A 117 617 232 HOH HOH . Y 6 HOH A 118 618 233 HOH HOH . Y 6 HOH A 119 619 234 HOH HOH . Y 6 HOH A 120 620 240 HOH HOH . Y 6 HOH A 121 621 241 HOH HOH . Y 6 HOH A 122 622 242 HOH HOH . Y 6 HOH A 123 623 243 HOH HOH . Y 6 HOH A 124 624 244 HOH HOH . Y 6 HOH A 125 625 245 HOH HOH . Y 6 HOH A 126 626 248 HOH HOH . Y 6 HOH A 127 627 252 HOH HOH . Z 6 HOH B 1 501 3 HOH HOH . Z 6 HOH B 2 502 4 HOH HOH . Z 6 HOH B 3 503 6 HOH HOH . Z 6 HOH B 4 504 9 HOH HOH . Z 6 HOH B 5 505 10 HOH HOH . Z 6 HOH B 6 506 14 HOH HOH . Z 6 HOH B 7 507 15 HOH HOH . Z 6 HOH B 8 508 16 HOH HOH . Z 6 HOH B 9 509 17 HOH HOH . Z 6 HOH B 10 510 18 HOH HOH . Z 6 HOH B 11 511 19 HOH HOH . Z 6 HOH B 12 512 20 HOH HOH . Z 6 HOH B 13 513 26 HOH HOH . Z 6 HOH B 14 514 27 HOH HOH . Z 6 HOH B 15 515 35 HOH HOH . Z 6 HOH B 16 516 37 HOH HOH . Z 6 HOH B 17 517 38 HOH HOH . Z 6 HOH B 18 518 39 HOH HOH . Z 6 HOH B 19 519 40 HOH HOH . Z 6 HOH B 20 520 41 HOH HOH . Z 6 HOH B 21 521 42 HOH HOH . Z 6 HOH B 22 522 43 HOH HOH . Z 6 HOH B 23 523 45 HOH HOH . Z 6 HOH B 24 524 47 HOH HOH . Z 6 HOH B 25 525 51 HOH HOH . Z 6 HOH B 26 526 53 HOH HOH . Z 6 HOH B 27 527 55 HOH HOH . Z 6 HOH B 28 528 59 HOH HOH . Z 6 HOH B 29 529 60 HOH HOH . Z 6 HOH B 30 530 61 HOH HOH . Z 6 HOH B 31 531 62 HOH HOH . Z 6 HOH B 32 532 64 HOH HOH . Z 6 HOH B 33 533 66 HOH HOH . Z 6 HOH B 34 534 67 HOH HOH . Z 6 HOH B 35 535 68 HOH HOH . Z 6 HOH B 36 536 69 HOH HOH . Z 6 HOH B 37 537 72 HOH HOH . Z 6 HOH B 38 538 73 HOH HOH . Z 6 HOH B 39 539 75 HOH HOH . Z 6 HOH B 40 540 77 HOH HOH . Z 6 HOH B 41 541 80 HOH HOH . Z 6 HOH B 42 542 81 HOH HOH . Z 6 HOH B 43 543 83 HOH HOH . Z 6 HOH B 44 544 85 HOH HOH . Z 6 HOH B 45 545 86 HOH HOH . Z 6 HOH B 46 546 87 HOH HOH . Z 6 HOH B 47 547 91 HOH HOH . Z 6 HOH B 48 548 92 HOH HOH . Z 6 HOH B 49 549 94 HOH HOH . Z 6 HOH B 50 550 105 HOH HOH . Z 6 HOH B 51 551 109 HOH HOH . Z 6 HOH B 52 552 112 HOH HOH . Z 6 HOH B 53 553 115 HOH HOH . Z 6 HOH B 54 554 116 HOH HOH . Z 6 HOH B 55 555 117 HOH HOH . Z 6 HOH B 56 556 121 HOH HOH . Z 6 HOH B 57 557 122 HOH HOH . Z 6 HOH B 58 558 123 HOH HOH . Z 6 HOH B 59 559 126 HOH HOH . Z 6 HOH B 60 560 127 HOH HOH . Z 6 HOH B 61 561 128 HOH HOH . Z 6 HOH B 62 562 132 HOH HOH . Z 6 HOH B 63 563 133 HOH HOH . Z 6 HOH B 64 564 135 HOH HOH . Z 6 HOH B 65 565 136 HOH HOH . Z 6 HOH B 66 566 137 HOH HOH . Z 6 HOH B 67 567 139 HOH HOH . Z 6 HOH B 68 568 142 HOH HOH . Z 6 HOH B 69 569 143 HOH HOH . Z 6 HOH B 70 570 147 HOH HOH . Z 6 HOH B 71 571 148 HOH HOH . Z 6 HOH B 72 572 152 HOH HOH . Z 6 HOH B 73 573 153 HOH HOH . Z 6 HOH B 74 574 154 HOH HOH . Z 6 HOH B 75 575 155 HOH HOH . Z 6 HOH B 76 576 157 HOH HOH . Z 6 HOH B 77 577 158 HOH HOH . Z 6 HOH B 78 578 159 HOH HOH . Z 6 HOH B 79 579 162 HOH HOH . Z 6 HOH B 80 580 163 HOH HOH . Z 6 HOH B 81 581 164 HOH HOH . Z 6 HOH B 82 582 166 HOH HOH . Z 6 HOH B 83 583 168 HOH HOH . Z 6 HOH B 84 584 171 HOH HOH . Z 6 HOH B 85 585 175 HOH HOH . Z 6 HOH B 86 586 176 HOH HOH . Z 6 HOH B 87 587 178 HOH HOH . Z 6 HOH B 88 588 179 HOH HOH . Z 6 HOH B 89 589 180 HOH HOH . Z 6 HOH B 90 590 185 HOH HOH . Z 6 HOH B 91 591 186 HOH HOH . Z 6 HOH B 92 592 189 HOH HOH . Z 6 HOH B 93 593 190 HOH HOH . Z 6 HOH B 94 594 191 HOH HOH . Z 6 HOH B 95 595 192 HOH HOH . Z 6 HOH B 96 596 193 HOH HOH . Z 6 HOH B 97 597 194 HOH HOH . Z 6 HOH B 98 598 195 HOH HOH . Z 6 HOH B 99 599 196 HOH HOH . Z 6 HOH B 100 600 197 HOH HOH . Z 6 HOH B 101 601 198 HOH HOH . Z 6 HOH B 102 602 199 HOH HOH . Z 6 HOH B 103 603 201 HOH HOH . Z 6 HOH B 104 604 202 HOH HOH . Z 6 HOH B 105 605 205 HOH HOH . Z 6 HOH B 106 606 206 HOH HOH . Z 6 HOH B 107 607 211 HOH HOH . Z 6 HOH B 108 608 212 HOH HOH . Z 6 HOH B 109 609 213 HOH HOH . Z 6 HOH B 110 610 217 HOH HOH . Z 6 HOH B 111 611 218 HOH HOH . Z 6 HOH B 112 612 219 HOH HOH . Z 6 HOH B 113 613 226 HOH HOH . Z 6 HOH B 114 614 229 HOH HOH . Z 6 HOH B 115 615 230 HOH HOH . Z 6 HOH B 116 616 235 HOH HOH . Z 6 HOH B 117 617 236 HOH HOH . Z 6 HOH B 118 618 237 HOH HOH . Z 6 HOH B 119 619 238 HOH HOH . Z 6 HOH B 120 620 239 HOH HOH . Z 6 HOH B 121 621 246 HOH HOH . Z 6 HOH B 122 622 247 HOH HOH . Z 6 HOH B 123 623 249 HOH HOH . Z 6 HOH B 124 624 250 HOH HOH . Z 6 HOH B 125 625 251 HOH HOH . Z 6 HOH B 126 626 253 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . W 3 54.719 12.051 -10.273 1 54.88 ? C1 GOL 405 B 1 HETATM 2 O O1 GOL . . . W 3 53.985 13.051 -10.98 1 48.1 ? O1 GOL 405 B 1 HETATM 3 C C2 GOL . . . W 3 55.745 11.429 -11.225 1 56.49 ? C2 GOL 405 B 1 HETATM 4 O O2 GOL . . . W 3 56.935 12.232 -11.279 1 61.62 ? O2 GOL 405 B 1 HETATM 5 C C3 GOL . . . W 3 56.089 10.003 -10.8 1 55.87 ? C3 GOL 405 B 1 HETATM 6 O O3 GOL . . . W 3 57.485 9.803 -10.517 1 53.35 ? O3 GOL 405 B 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 245 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #