data_3W82 # _model_server_result.job_id Ezm0cd_f1pW4BwsvGDRimg _model_server_result.datetime_utc '2024-11-22 04:55:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3w82 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"N","auth_seq_id":716}' # _entry.id 3W82 # _exptl.entry_id 3W82 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 150.087 _entity.id 10 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'L(+)-TARTARIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3W82 _cell.length_a 259.98 _cell.length_b 259.98 _cell.length_c 65.3 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3W82 _symmetry.cell_setting ? _symmetry.Int_Tables_number 146 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,H,I,J,K,R 1 1 B,E,F,G,L,M,N,O,P,Q,S 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 10 _struct_asym.id N _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 2 oligosaccharide 3 oligosaccharide 4 oligosaccharide 5 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 2 3 2 BMA NAG C1 O1 . O4 HO4 . sing 3 ? 2 4 3 MAN BMA C1 O1 . O6 HO6 . sing 4 ? 2 5 4 MAN MAN C1 O1 . O3 HO3 . sing 5 ? 2 6 5 MAN MAN C1 O1 . O2 HO2 . sing 6 ? 2 7 4 MAN MAN C1 O1 . O6 HO6 . sing 7 ? 2 8 7 MAN MAN C1 O1 . O2 HO2 . sing 8 ? 2 9 3 MAN BMA C1 O1 . O3 HO3 . sing 9 ? 2 10 9 MAN MAN C1 O1 . O2 HO2 . sing 10 ? 3 2 1 NAG NAG C1 O1 . O4 HO4 . sing 11 ? 4 2 1 NAG NAG C1 O1 . O4 HO4 . sing 12 ? 4 3 2 BMA NAG C1 O1 . O4 HO4 . sing 13 ? 4 4 3 MAN BMA C1 O1 . O6 HO6 . sing 14 ? 4 5 4 MAN MAN C1 O1 . O6 HO6 . sing 15 ? 4 6 5 MAN MAN C1 O1 . O2 HO2 . sing 16 ? 4 7 4 MAN MAN C1 O1 . O3 HO3 . sing 17 ? 4 8 3 MAN BMA C1 O1 . O3 HO3 . sing 18 ? 4 9 8 MAN MAN C1 O1 . O2 HO2 . sing 19 ? 5 2 1 FUC NAG C1 O1 . O6 HO6 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n C NAG 1 C 1 NAG A 701 NAG 2 n C NAG 2 C 2 NAG A 702 NAG 2 n C BMA 3 C 3 BMA A 703 BMA 2 n C MAN 4 C 4 MAN A 706 MAN 2 n C MAN 5 C 5 MAN A 709 MAN 2 n C MAN 6 C 6 MAN A 710 MAN 2 n C MAN 7 C 7 MAN A 707 MAN 2 n C MAN 8 C 8 MAN A 708 MAN 2 n C MAN 9 C 9 MAN A 704 MAN 2 n C MAN 10 C 10 MAN A 705 MAN 3 n D NAG 1 D 1 NAG A 712 NAG 3 n D NAG 2 D 2 NAG A 713 NAG 4 n E NAG 1 E 1 NAG B 701 NAG 4 n E NAG 2 E 2 NAG B 702 NAG 4 n E BMA 3 E 3 BMA B 703 BMA 4 n E MAN 4 E 4 MAN B 706 MAN 4 n E MAN 5 E 5 MAN B 707 MAN 4 n E MAN 6 E 6 MAN B 708 MAN 4 n E MAN 7 E 7 MAN B 709 MAN 4 n E MAN 8 E 8 MAN B 704 MAN 4 n E MAN 9 E 9 MAN B 705 MAN 5 n F NAG 1 F 1 NAG B 711 NAG 5 n F FUC 2 F 2 FUC B 712 FUC 3 n G NAG 1 G 1 NAG B 713 NAG 3 n G NAG 2 G 2 NAG B 714 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 515 A CYS 541 1_555 A SG CYS 551 A CYS 577 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.072 ? disulf ? disulf2 B SG CYS 515 B CYS 541 1_555 B SG CYS 551 B CYS 577 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? covale ? covale1 A ND2 ASN 84 A ASN 110 1_555 H C1 NAG . A NAG 711 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.456 ? covale ? covale2 A ND2 ASN 346 A ASN 372 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? covale ? covale3 A ND2 ASN 389 A ASN 415 1_555 D C1 NAG . D NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale4 B ND2 ASN 84 B ASN 110 1_555 L C1 NAG . B NAG 710 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.457 ? covale ? covale5 B ND2 ASN 164 B ASN 190 1_555 F C1 NAG . F NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? covale ? covale6 B ND2 ASN 346 B ASN 372 1_555 E C1 NAG . E NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale7 B ND2 ASN 389 B ASN 415 1_555 G C1 NAG . G NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? covale ? covale8 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 ? covale ? covale9 C O4 NAG . C NAG 2 1_555 C C1 BMA . C BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.422 ? covale ? covale10 C O6 BMA . C BMA 3 1_555 C C1 MAN . C MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale11 C O3 BMA . C BMA 3 1_555 C C1 MAN . C MAN 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.434 ? covale ? covale12 C O3 MAN . C MAN 4 1_555 C C1 MAN . C MAN 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.432 ? covale ? covale13 C O6 MAN . C MAN 4 1_555 C C1 MAN . C MAN 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale14 C O2 MAN . C MAN 5 1_555 C C1 MAN . C MAN 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? covale ? covale15 C O2 MAN . C MAN 7 1_555 C C1 MAN . C MAN 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.428 ? covale ? covale16 C O2 MAN . C MAN 9 1_555 C C1 MAN . C MAN 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale17 D O4 NAG . D NAG 1 1_555 D C1 NAG . D NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.456 ? covale ? covale18 E O4 NAG . E NAG 1 1_555 E C1 NAG . E NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.434 ? covale ? covale19 E O4 NAG . E NAG 2 1_555 E C1 BMA . E BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 ? covale ? covale20 E O6 BMA . E BMA 3 1_555 E C1 MAN . E MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.43 ? covale ? covale21 E O3 BMA . E BMA 3 1_555 E C1 MAN . E MAN 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? covale ? covale22 E O6 MAN . E MAN 4 1_555 E C1 MAN . E MAN 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? covale ? covale23 E O3 MAN . E MAN 4 1_555 E C1 MAN . E MAN 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? covale ? covale24 E O2 MAN . E MAN 5 1_555 E C1 MAN . E MAN 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.43 ? covale ? covale25 E O2 MAN . E MAN 8 1_555 E C1 MAN . E MAN 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.432 ? covale ? covale26 F O6 NAG . F NAG 1 1_555 F C1 FUC . F FUC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.456 ? covale ? covale27 G O4 NAG . G NAG 1 1_555 G C1 NAG . G NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.451 ? # _chem_comp.formula 'C4 H6 O6' _chem_comp.formula_weight 150.087 _chem_comp.id TLA _chem_comp.mon_nstd_flag . _chem_comp.name 'L(+)-TARTARIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C1 TLA doub 437 n n O11 C1 TLA sing 438 n n O11 H11 TLA sing 439 n n C1 C2 TLA sing 440 n n C2 O2 TLA sing 441 n n C2 C3 TLA sing 442 n n C2 H2 TLA sing 443 n n O2 HA TLA sing 444 n n C3 O3 TLA sing 445 n n C3 C4 TLA sing 446 n n C3 H3 TLA sing 447 n n O3 HB TLA sing 448 n n C4 O4 TLA doub 449 n n C4 O41 TLA sing 450 n n O41 H41 TLA sing 451 n n # _atom_sites.entry_id 3W82 _atom_sites.fract_transf_matrix[1][1] 0.003846 _atom_sites.fract_transf_matrix[1][2] 0.002221 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.004441 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015314 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code H 6 NAG A 1 711 711 NAG NAG . I 7 IDR A 1 714 714 IDR IDR . J 8 PO4 A 1 715 715 PO4 PO4 . K 9 CL A 1 716 716 CL CL . L 6 NAG B 1 710 710 NAG NAG . M 7 IDR B 1 715 715 IDR IDR . N 10 TLA B 1 716 716 TLA TLA . O 11 PO3 B 1 717 717 PO3 PO3 . P 8 PO4 B 1 718 718 PO4 PO4 . Q 9 CL B 1 719 719 CL CL . R 12 HOH A 1 801 1 HOH HOH . R 12 HOH A 2 802 2 HOH HOH . R 12 HOH A 3 803 3 HOH HOH . R 12 HOH A 4 804 4 HOH HOH . R 12 HOH A 5 805 5 HOH HOH . R 12 HOH A 6 806 8 HOH HOH . R 12 HOH A 7 807 10 HOH HOH . R 12 HOH A 8 808 11 HOH HOH . R 12 HOH A 9 809 13 HOH HOH . R 12 HOH A 10 810 14 HOH HOH . R 12 HOH A 11 811 15 HOH HOH . R 12 HOH A 12 812 16 HOH HOH . R 12 HOH A 13 813 17 HOH HOH . R 12 HOH A 14 814 21 HOH HOH . R 12 HOH A 15 815 23 HOH HOH . R 12 HOH A 16 816 24 HOH HOH . R 12 HOH A 17 817 25 HOH HOH . R 12 HOH A 18 818 26 HOH HOH . R 12 HOH A 19 819 27 HOH HOH . R 12 HOH A 20 820 29 HOH HOH . R 12 HOH A 21 821 31 HOH HOH . R 12 HOH A 22 822 32 HOH HOH . R 12 HOH A 23 823 37 HOH HOH . R 12 HOH A 24 824 39 HOH HOH . R 12 HOH A 25 825 42 HOH HOH . R 12 HOH A 26 826 43 HOH HOH . R 12 HOH A 27 827 46 HOH HOH . R 12 HOH A 28 828 47 HOH HOH . R 12 HOH A 29 829 50 HOH HOH . R 12 HOH A 30 830 51 HOH HOH . R 12 HOH A 31 831 52 HOH HOH . R 12 HOH A 32 832 53 HOH HOH . R 12 HOH A 33 833 57 HOH HOH . R 12 HOH A 34 834 62 HOH HOH . R 12 HOH A 35 835 63 HOH HOH . R 12 HOH A 36 836 64 HOH HOH . R 12 HOH A 37 837 65 HOH HOH . R 12 HOH A 38 838 66 HOH HOH . R 12 HOH A 39 839 67 HOH HOH . R 12 HOH A 40 840 68 HOH HOH . R 12 HOH A 41 841 69 HOH HOH . R 12 HOH A 42 842 74 HOH HOH . R 12 HOH A 43 843 75 HOH HOH . R 12 HOH A 44 844 76 HOH HOH . R 12 HOH A 45 845 77 HOH HOH . R 12 HOH A 46 846 80 HOH HOH . S 12 HOH B 1 801 6 HOH HOH . S 12 HOH B 2 802 7 HOH HOH . S 12 HOH B 3 803 9 HOH HOH . S 12 HOH B 4 804 12 HOH HOH . S 12 HOH B 5 805 18 HOH HOH . S 12 HOH B 6 806 19 HOH HOH . S 12 HOH B 7 807 20 HOH HOH . S 12 HOH B 8 808 22 HOH HOH . S 12 HOH B 9 809 28 HOH HOH . S 12 HOH B 10 810 30 HOH HOH . S 12 HOH B 11 811 33 HOH HOH . S 12 HOH B 12 812 34 HOH HOH . S 12 HOH B 13 813 35 HOH HOH . S 12 HOH B 14 814 36 HOH HOH . S 12 HOH B 15 815 38 HOH HOH . S 12 HOH B 16 816 40 HOH HOH . S 12 HOH B 17 817 41 HOH HOH . S 12 HOH B 18 818 44 HOH HOH . S 12 HOH B 19 819 45 HOH HOH . S 12 HOH B 20 820 48 HOH HOH . S 12 HOH B 21 821 49 HOH HOH . S 12 HOH B 22 822 54 HOH HOH . S 12 HOH B 23 823 55 HOH HOH . S 12 HOH B 24 824 56 HOH HOH . S 12 HOH B 25 825 58 HOH HOH . S 12 HOH B 26 826 59 HOH HOH . S 12 HOH B 27 827 60 HOH HOH . S 12 HOH B 28 828 61 HOH HOH . S 12 HOH B 29 829 70 HOH HOH . S 12 HOH B 30 830 71 HOH HOH . S 12 HOH B 31 831 72 HOH HOH . S 12 HOH B 32 832 73 HOH HOH . S 12 HOH B 33 833 78 HOH HOH . S 12 HOH B 34 834 79 HOH HOH . S 12 HOH B 35 835 81 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 TLA . . . N 10 98.465 55.186 21.737 1 37.21 ? O1 TLA 716 B 1 HETATM 2 O O11 TLA . . . N 10 96.441 54.861 20.919 1 36.47 ? O11 TLA 716 B 1 HETATM 3 C C1 TLA . . . N 10 97.221 55.25 21.82 1 37.49 ? C1 TLA 716 B 1 HETATM 4 C C2 TLA . . . N 10 96.633 55.818 23.07 1 38.06 ? C2 TLA 716 B 1 HETATM 5 O O2 TLA . . . N 10 95.221 55.68 22.937 1 39.08 ? O2 TLA 716 B 1 HETATM 6 C C3 TLA . . . N 10 97.041 57.286 23.278 1 38.46 ? C3 TLA 716 B 1 HETATM 7 O O3 TLA . . . N 10 96.9 58.021 22.048 1 38.55 ? O3 TLA 716 B 1 HETATM 8 C C4 TLA . . . N 10 96.238 57.911 24.408 1 38.74 ? C4 TLA 716 B 1 HETATM 9 O O4 TLA . . . N 10 96.582 57.671 25.588 1 38.09 ? O4 TLA 716 B 1 HETATM 10 O O41 TLA . . . N 10 95.25 58.646 24.164 1 37.76 ? O41 TLA 716 B 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 311 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 10 #