data_3W8E # _model_server_result.job_id AMzFcPMqDNygey5r9moFPQ _model_server_result.datetime_utc '2024-11-13 03:58:58' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3w8e # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":303}' # _entry.id 3W8E # _exptl.entry_id 3W8E _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3W8E _cell.length_a 62.78 _cell.length_b 62.78 _cell.length_c 119.49 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3W8E _symmetry.cell_setting ? _symmetry.Int_Tables_number 94 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 42 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_665 -x+1,-y+1,z -1 0 0 0 -1 0 0 0 1 62.78 62.78 0 3 'crystal symmetry operation' 7_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 4 'crystal symmetry operation' 8_665 -y+1,-x+1,-z 0 -1 0 -1 0 0 0 0 -1 62.78 62.78 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OXT ARG 260 A ARG 260 1_555 D NA NA . A NA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.363 ? metalc ? metalc2 D NA NA . A NA 303 1_555 E O HOH . A HOH 427 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.348 ? metalc ? metalc3 D NA NA . A NA 303 1_555 E O HOH . A HOH 430 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.385 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3W8E _atom_sites.fract_transf_matrix[1][1] 0.015929 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015929 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008369 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAD A 1 301 850 NAD NAD . C 3 3HR A 1 302 954 3HR 3HL . D 4 NA A 1 303 1 NA NA . E 5 HOH A 1 401 1 HOH HOH . E 5 HOH A 2 402 2 HOH HOH . E 5 HOH A 3 403 3 HOH HOH . E 5 HOH A 4 404 4 HOH HOH . E 5 HOH A 5 405 5 HOH HOH . E 5 HOH A 6 406 6 HOH HOH . E 5 HOH A 7 407 7 HOH HOH . E 5 HOH A 8 408 8 HOH HOH . E 5 HOH A 9 409 9 HOH HOH . E 5 HOH A 10 410 10 HOH HOH . E 5 HOH A 11 411 11 HOH HOH . E 5 HOH A 12 412 12 HOH HOH . E 5 HOH A 13 413 13 HOH HOH . E 5 HOH A 14 414 14 HOH HOH . E 5 HOH A 15 415 15 HOH HOH . E 5 HOH A 16 416 16 HOH HOH . E 5 HOH A 17 417 17 HOH HOH . E 5 HOH A 18 418 18 HOH HOH . E 5 HOH A 19 419 19 HOH HOH . E 5 HOH A 20 420 20 HOH HOH . E 5 HOH A 21 421 21 HOH HOH . E 5 HOH A 22 422 22 HOH HOH . E 5 HOH A 23 423 23 HOH HOH . E 5 HOH A 24 424 24 HOH HOH . E 5 HOH A 25 425 25 HOH HOH . E 5 HOH A 26 426 26 HOH HOH . E 5 HOH A 27 427 27 HOH HOH . E 5 HOH A 28 428 28 HOH HOH . E 5 HOH A 29 429 29 HOH HOH . E 5 HOH A 30 430 30 HOH HOH . E 5 HOH A 31 431 31 HOH HOH . E 5 HOH A 32 432 32 HOH HOH . E 5 HOH A 33 433 33 HOH HOH . E 5 HOH A 34 434 34 HOH HOH . E 5 HOH A 35 435 35 HOH HOH . E 5 HOH A 36 436 36 HOH HOH . E 5 HOH A 37 437 37 HOH HOH . E 5 HOH A 38 438 38 HOH HOH . E 5 HOH A 39 439 39 HOH HOH . E 5 HOH A 40 440 40 HOH HOH . E 5 HOH A 41 441 41 HOH HOH . E 5 HOH A 42 442 42 HOH HOH . E 5 HOH A 43 443 43 HOH HOH . E 5 HOH A 44 444 44 HOH HOH . E 5 HOH A 45 445 45 HOH HOH . E 5 HOH A 46 446 46 HOH HOH . E 5 HOH A 47 447 47 HOH HOH . E 5 HOH A 48 448 48 HOH HOH . E 5 HOH A 49 449 49 HOH HOH . E 5 HOH A 50 450 50 HOH HOH . E 5 HOH A 51 451 51 HOH HOH . E 5 HOH A 52 452 52 HOH HOH . E 5 HOH A 53 453 53 HOH HOH . E 5 HOH A 54 454 54 HOH HOH . E 5 HOH A 55 455 55 HOH HOH . E 5 HOH A 56 456 56 HOH HOH . E 5 HOH A 57 457 57 HOH HOH . E 5 HOH A 58 458 58 HOH HOH . E 5 HOH A 59 459 59 HOH HOH . E 5 HOH A 60 460 60 HOH HOH . E 5 HOH A 61 461 61 HOH HOH . E 5 HOH A 62 462 62 HOH HOH . E 5 HOH A 63 463 63 HOH HOH . E 5 HOH A 64 464 64 HOH HOH . E 5 HOH A 65 465 65 HOH HOH . E 5 HOH A 66 466 66 HOH HOH . E 5 HOH A 67 467 67 HOH HOH . E 5 HOH A 68 468 68 HOH HOH . E 5 HOH A 69 469 69 HOH HOH . E 5 HOH A 70 470 70 HOH HOH . E 5 HOH A 71 471 71 HOH HOH . E 5 HOH A 72 472 72 HOH HOH . E 5 HOH A 73 473 73 HOH HOH . E 5 HOH A 74 474 74 HOH HOH . E 5 HOH A 75 475 75 HOH HOH . E 5 HOH A 76 476 76 HOH HOH . E 5 HOH A 77 477 77 HOH HOH . E 5 HOH A 78 478 78 HOH HOH . E 5 HOH A 79 479 79 HOH HOH . E 5 HOH A 80 480 80 HOH HOH . E 5 HOH A 81 481 81 HOH HOH . E 5 HOH A 82 482 82 HOH HOH . E 5 HOH A 83 483 83 HOH HOH . E 5 HOH A 84 484 84 HOH HOH . E 5 HOH A 85 485 85 HOH HOH . E 5 HOH A 86 486 86 HOH HOH . E 5 HOH A 87 487 87 HOH HOH . E 5 HOH A 88 488 88 HOH HOH . E 5 HOH A 89 489 89 HOH HOH . E 5 HOH A 90 490 90 HOH HOH . E 5 HOH A 91 491 91 HOH HOH . E 5 HOH A 92 492 92 HOH HOH . E 5 HOH A 93 493 93 HOH HOH . E 5 HOH A 94 494 94 HOH HOH . E 5 HOH A 95 495 95 HOH HOH . E 5 HOH A 96 496 96 HOH HOH . E 5 HOH A 97 497 97 HOH HOH . E 5 HOH A 98 498 98 HOH HOH . E 5 HOH A 99 499 99 HOH HOH . E 5 HOH A 100 500 100 HOH HOH . E 5 HOH A 101 501 101 HOH HOH . E 5 HOH A 102 502 102 HOH HOH . E 5 HOH A 103 503 103 HOH HOH . E 5 HOH A 104 504 104 HOH HOH . E 5 HOH A 105 505 105 HOH HOH . E 5 HOH A 106 506 106 HOH HOH . E 5 HOH A 107 507 107 HOH HOH . E 5 HOH A 108 508 108 HOH HOH . E 5 HOH A 109 509 109 HOH HOH . E 5 HOH A 110 510 110 HOH HOH . E 5 HOH A 111 511 111 HOH HOH . E 5 HOH A 112 512 112 HOH HOH . E 5 HOH A 113 513 113 HOH HOH . E 5 HOH A 114 514 114 HOH HOH . E 5 HOH A 115 515 115 HOH HOH . E 5 HOH A 116 516 116 HOH HOH . E 5 HOH A 117 517 117 HOH HOH . E 5 HOH A 118 518 118 HOH HOH . E 5 HOH A 119 519 119 HOH HOH . E 5 HOH A 120 520 120 HOH HOH . E 5 HOH A 121 521 121 HOH HOH . E 5 HOH A 122 522 122 HOH HOH . E 5 HOH A 123 523 123 HOH HOH . E 5 HOH A 124 524 124 HOH HOH . E 5 HOH A 125 525 125 HOH HOH . E 5 HOH A 126 526 126 HOH HOH . E 5 HOH A 127 527 127 HOH HOH . E 5 HOH A 128 528 128 HOH HOH . E 5 HOH A 129 529 129 HOH HOH . E 5 HOH A 130 530 130 HOH HOH . E 5 HOH A 131 531 131 HOH HOH . E 5 HOH A 132 532 132 HOH HOH . E 5 HOH A 133 533 133 HOH HOH . E 5 HOH A 134 534 134 HOH HOH . E 5 HOH A 135 535 135 HOH HOH . E 5 HOH A 136 536 136 HOH HOH . E 5 HOH A 137 537 137 HOH HOH . E 5 HOH A 138 538 138 HOH HOH . E 5 HOH A 139 539 139 HOH HOH . E 5 HOH A 140 540 140 HOH HOH . E 5 HOH A 141 541 141 HOH HOH . E 5 HOH A 142 542 142 HOH HOH . E 5 HOH A 143 543 143 HOH HOH . E 5 HOH A 144 544 144 HOH HOH . E 5 HOH A 145 545 145 HOH HOH . E 5 HOH A 146 546 146 HOH HOH . E 5 HOH A 147 547 147 HOH HOH . E 5 HOH A 148 548 148 HOH HOH . E 5 HOH A 149 549 149 HOH HOH . E 5 HOH A 150 550 150 HOH HOH . E 5 HOH A 151 551 151 HOH HOH . E 5 HOH A 152 552 152 HOH HOH . E 5 HOH A 153 553 153 HOH HOH . E 5 HOH A 154 554 154 HOH HOH . E 5 HOH A 155 555 155 HOH HOH . E 5 HOH A 156 556 156 HOH HOH . E 5 HOH A 157 557 157 HOH HOH . E 5 HOH A 158 558 158 HOH HOH . E 5 HOH A 159 559 159 HOH HOH . E 5 HOH A 160 560 160 HOH HOH . E 5 HOH A 161 561 161 HOH HOH . E 5 HOH A 162 562 162 HOH HOH . E 5 HOH A 163 563 163 HOH HOH . E 5 HOH A 164 564 164 HOH HOH . E 5 HOH A 165 565 165 HOH HOH . E 5 HOH A 166 566 166 HOH HOH . E 5 HOH A 167 567 167 HOH HOH . E 5 HOH A 168 568 168 HOH HOH . E 5 HOH A 169 569 169 HOH HOH . E 5 HOH A 170 570 170 HOH HOH . E 5 HOH A 171 571 171 HOH HOH . E 5 HOH A 172 572 172 HOH HOH . E 5 HOH A 173 573 173 HOH HOH . E 5 HOH A 174 574 174 HOH HOH . E 5 HOH A 175 575 175 HOH HOH . E 5 HOH A 176 576 176 HOH HOH . E 5 HOH A 177 577 177 HOH HOH . E 5 HOH A 178 578 178 HOH HOH . E 5 HOH A 179 579 179 HOH HOH . E 5 HOH A 180 580 180 HOH HOH . E 5 HOH A 181 581 181 HOH HOH . E 5 HOH A 182 582 182 HOH HOH . E 5 HOH A 183 583 183 HOH HOH . E 5 HOH A 184 584 184 HOH HOH . E 5 HOH A 185 585 185 HOH HOH . E 5 HOH A 186 586 186 HOH HOH . E 5 HOH A 187 587 187 HOH HOH . E 5 HOH A 188 588 188 HOH HOH . E 5 HOH A 189 589 189 HOH HOH . E 5 HOH A 190 590 190 HOH HOH . E 5 HOH A 191 591 191 HOH HOH . E 5 HOH A 192 592 192 HOH HOH . E 5 HOH A 193 593 193 HOH HOH . E 5 HOH A 194 594 194 HOH HOH . E 5 HOH A 195 595 195 HOH HOH . E 5 HOH A 196 596 196 HOH HOH . E 5 HOH A 197 597 197 HOH HOH . E 5 HOH A 198 598 198 HOH HOH . E 5 HOH A 199 599 199 HOH HOH . E 5 HOH A 200 600 200 HOH HOH . E 5 HOH A 201 601 201 HOH HOH . E 5 HOH A 202 602 202 HOH HOH . E 5 HOH A 203 603 203 HOH HOH . E 5 HOH A 204 604 204 HOH HOH . E 5 HOH A 205 605 205 HOH HOH . E 5 HOH A 206 606 206 HOH HOH . E 5 HOH A 207 607 207 HOH HOH . E 5 HOH A 208 608 208 HOH HOH . E 5 HOH A 209 609 209 HOH HOH . E 5 HOH A 210 610 210 HOH HOH . E 5 HOH A 211 611 211 HOH HOH . E 5 HOH A 212 612 212 HOH HOH . E 5 HOH A 213 613 213 HOH HOH . E 5 HOH A 214 614 214 HOH HOH . E 5 HOH A 215 615 215 HOH HOH . E 5 HOH A 216 616 216 HOH HOH . E 5 HOH A 217 617 217 HOH HOH . E 5 HOH A 218 618 218 HOH HOH . E 5 HOH A 219 619 219 HOH HOH . E 5 HOH A 220 620 220 HOH HOH . E 5 HOH A 221 621 221 HOH HOH . E 5 HOH A 222 622 222 HOH HOH . E 5 HOH A 223 623 223 HOH HOH . E 5 HOH A 224 624 224 HOH HOH . E 5 HOH A 225 625 225 HOH HOH . E 5 HOH A 226 626 226 HOH HOH . E 5 HOH A 227 627 227 HOH HOH . E 5 HOH A 228 628 228 HOH HOH . E 5 HOH A 229 629 229 HOH HOH . E 5 HOH A 230 630 230 HOH HOH . E 5 HOH A 231 631 231 HOH HOH . E 5 HOH A 232 632 232 HOH HOH . E 5 HOH A 233 633 233 HOH HOH . E 5 HOH A 234 634 234 HOH HOH . E 5 HOH A 235 635 235 HOH HOH . E 5 HOH A 236 636 236 HOH HOH . E 5 HOH A 237 637 237 HOH HOH . E 5 HOH A 238 638 238 HOH HOH . E 5 HOH A 239 639 239 HOH HOH . E 5 HOH A 240 640 240 HOH HOH . E 5 HOH A 241 641 241 HOH HOH . E 5 HOH A 242 642 242 HOH HOH . E 5 HOH A 243 643 243 HOH HOH . E 5 HOH A 244 644 244 HOH HOH . E 5 HOH A 245 645 245 HOH HOH . E 5 HOH A 246 646 246 HOH HOH . E 5 HOH A 247 647 247 HOH HOH . E 5 HOH A 248 648 248 HOH HOH . E 5 HOH A 249 649 249 HOH HOH . E 5 HOH A 250 650 250 HOH HOH . E 5 HOH A 251 651 251 HOH HOH . E 5 HOH A 252 652 252 HOH HOH . E 5 HOH A 253 653 253 HOH HOH . E 5 HOH A 254 654 254 HOH HOH . E 5 HOH A 255 655 255 HOH HOH . E 5 HOH A 256 656 256 HOH HOH . E 5 HOH A 257 657 257 HOH HOH . E 5 HOH A 258 658 258 HOH HOH . E 5 HOH A 259 659 259 HOH HOH . E 5 HOH A 260 660 260 HOH HOH . E 5 HOH A 261 661 261 HOH HOH . E 5 HOH A 262 662 262 HOH HOH . E 5 HOH A 263 663 263 HOH HOH . E 5 HOH A 264 664 264 HOH HOH . E 5 HOH A 265 665 265 HOH HOH . E 5 HOH A 266 666 266 HOH HOH . E 5 HOH A 267 667 267 HOH HOH . E 5 HOH A 268 668 268 HOH HOH . E 5 HOH A 269 669 269 HOH HOH . E 5 HOH A 270 670 270 HOH HOH . E 5 HOH A 271 671 271 HOH HOH . E 5 HOH A 272 672 272 HOH HOH . E 5 HOH A 273 673 273 HOH HOH . E 5 HOH A 274 674 274 HOH HOH . E 5 HOH A 275 675 275 HOH HOH . E 5 HOH A 276 676 276 HOH HOH . E 5 HOH A 277 677 277 HOH HOH . E 5 HOH A 278 678 278 HOH HOH . E 5 HOH A 279 679 279 HOH HOH . E 5 HOH A 280 680 280 HOH HOH . E 5 HOH A 281 681 281 HOH HOH . E 5 HOH A 282 682 282 HOH HOH . E 5 HOH A 283 683 283 HOH HOH . E 5 HOH A 284 684 284 HOH HOH . E 5 HOH A 285 685 285 HOH HOH . E 5 HOH A 286 686 286 HOH HOH . E 5 HOH A 287 687 287 HOH HOH . E 5 HOH A 288 688 288 HOH HOH . E 5 HOH A 289 689 289 HOH HOH . E 5 HOH A 290 690 290 HOH HOH . E 5 HOH A 291 691 291 HOH HOH . E 5 HOH A 292 692 292 HOH HOH . E 5 HOH A 293 693 293 HOH HOH . E 5 HOH A 294 694 294 HOH HOH . E 5 HOH A 295 695 295 HOH HOH . E 5 HOH A 296 696 296 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 4 _atom_site.Cartn_x 24.764 _atom_site.Cartn_y 38.025 _atom_site.Cartn_z 0 _atom_site.occupancy 0.5 _atom_site.B_iso_or_equiv 3.61 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 303 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 43 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 263 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #