data_3W8J
#
_model_server_result.job_id            CMtUvfoA78dUSrn1soMQJQ 
_model_server_result.datetime_utc      '2024-11-18 09:36:52' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3w8j 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"I","auth_seq_id":203}' 
#
_entry.id    3W8J 
#
_exptl.entry_id    3W8J 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3W8J 
_cell.length_a            39.045 
_cell.length_b            53.375 
_cell.length_c            133.353 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3W8J 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,E,F,M,O 1 1 
B,D,G,H,I,J,K,L,N,P 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 G N N 
? 4 H N N 
? 4 I N N 
? 4 J N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 57 A CYS 55 1_555 C SG CYS 5 C CYS 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.072 ? 
disulf ? disulf2 B SG CYS 57 B CYS 55 1_555 D SG CYS 5 D CYS 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.063 ? 
metalc ? metalc1 A OH TYR 23 A TYR 21 1_555 E K K . A K 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.744 ? 
metalc ? metalc2 A O SER 24 A SER 22 1_555 F K K . A K 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.736 ? 
metalc ? metalc3 A O ASP 27 A ASP 25 1_555 F K K . A K 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.879 ? 
metalc ? metalc4 A OD1 ASP 27 A ASP 25 1_555 F K K . A K 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.348 ? 
metalc ? metalc5 A O VAL 29 A VAL 27 1_555 F K K . A K 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.803 ? 
metalc ? metalc6 A OE2 GLU 51 A GLU 49 1_555 E K K . A K 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.677 ? 
metalc ? metalc7 A OE1 GLU 51 A GLU 49 1_555 E K K . A K 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.234 ? 
metalc ? metalc8 A O ALA 60 A ALA 58 1_555 E K K . A K 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.729 ? 
metalc ? metalc9 A OG1 THR 64 A THR 62 1_555 E K K . A K 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.788 ? 
metalc ? metalc10 B OH TYR 23 B TYR 21 1_555 K K K . B K 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.12 ? 
metalc ? metalc11 B O SER 24 B SER 22 1_555 L K K . B K 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.582 ? 
metalc ? metalc12 B O ASP 27 B ASP 25 1_555 L K K . B K 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.892 ? 
metalc ? metalc13 B OD1 ASP 27 B ASP 25 1_555 L K K . B K 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.048 ? 
metalc ? metalc14 B O VAL 29 B VAL 27 1_555 L K K . B K 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.57 ? 
metalc ? metalc15 B OE2 GLU 51 B GLU 49 1_555 K K K . B K 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.816 ? 
metalc ? metalc16 B OE1 GLU 51 B GLU 49 1_555 K K K . B K 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.475 ? 
metalc ? metalc17 B O ALA 60 B ALA 58 1_555 K K K . B K 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.696 ? 
metalc ? metalc18 B OG1 THR 64 B THR 62 1_555 K K K . B K 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.764 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 129 n n 
C1 C2 GOL sing 130 n n 
C1 H11 GOL sing 131 n n 
C1 H12 GOL sing 132 n n 
O1 HO1 GOL sing 133 n n 
C2 O2 GOL sing 134 n n 
C2 C3 GOL sing 135 n n 
C2 H2 GOL sing 136 n n 
O2 HO2 GOL sing 137 n n 
C3 O3 GOL sing 138 n n 
C3 H31 GOL sing 139 n n 
C3 H32 GOL sing 140 n n 
O3 HO3 GOL sing 141 n n 
#
_atom_sites.entry_id                     3W8J 
_atom_sites.fract_transf_matrix[1][1]    0.025611 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.018735 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007499 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 K A 1 201 1 K K . 
F 3 K A 1 202 2 K K . 
G 4 GOL B 1 201 1 GOL GOL . 
H 4 GOL B 1 202 3 GOL GOL . 
I 4 GOL B 1 203 4 GOL GOL . 
J 4 GOL B 1 204 5 GOL GOL . 
K 3 K B 1 205 3 K K . 
L 3 K B 1 206 4 K K . 
M 5 HOH A 1 301 4 HOH HOH . 
M 5 HOH A 2 302 6 HOH HOH . 
M 5 HOH A 3 303 18 HOH HOH . 
M 5 HOH A 4 304 25 HOH HOH . 
M 5 HOH A 5 305 26 HOH HOH . 
M 5 HOH A 6 306 30 HOH HOH . 
M 5 HOH A 7 307 35 HOH HOH . 
M 5 HOH A 8 308 37 HOH HOH . 
M 5 HOH A 9 309 43 HOH HOH . 
M 5 HOH A 10 310 44 HOH HOH . 
M 5 HOH A 11 311 47 HOH HOH . 
M 5 HOH A 12 312 50 HOH HOH . 
M 5 HOH A 13 313 51 HOH HOH . 
M 5 HOH A 14 314 53 HOH HOH . 
M 5 HOH A 15 315 56 HOH HOH . 
M 5 HOH A 16 316 57 HOH HOH . 
M 5 HOH A 17 317 60 HOH HOH . 
M 5 HOH A 18 318 61 HOH HOH . 
N 5 HOH B 1 301 1 HOH HOH . 
N 5 HOH B 2 302 2 HOH HOH . 
N 5 HOH B 3 303 3 HOH HOH . 
N 5 HOH B 4 304 5 HOH HOH . 
N 5 HOH B 5 305 7 HOH HOH . 
N 5 HOH B 6 306 8 HOH HOH . 
N 5 HOH B 7 307 9 HOH HOH . 
N 5 HOH B 8 308 10 HOH HOH . 
N 5 HOH B 9 309 11 HOH HOH . 
N 5 HOH B 10 310 12 HOH HOH . 
N 5 HOH B 11 311 13 HOH HOH . 
N 5 HOH B 12 312 14 HOH HOH . 
N 5 HOH B 13 313 15 HOH HOH . 
N 5 HOH B 14 314 16 HOH HOH . 
N 5 HOH B 15 315 17 HOH HOH . 
N 5 HOH B 16 316 19 HOH HOH . 
N 5 HOH B 17 317 20 HOH HOH . 
N 5 HOH B 18 318 21 HOH HOH . 
N 5 HOH B 19 319 22 HOH HOH . 
N 5 HOH B 20 320 23 HOH HOH . 
N 5 HOH B 21 321 24 HOH HOH . 
N 5 HOH B 22 322 27 HOH HOH . 
N 5 HOH B 23 323 28 HOH HOH . 
N 5 HOH B 24 324 31 HOH HOH . 
N 5 HOH B 25 325 32 HOH HOH . 
N 5 HOH B 26 326 33 HOH HOH . 
N 5 HOH B 27 327 34 HOH HOH . 
N 5 HOH B 28 328 36 HOH HOH . 
N 5 HOH B 29 329 38 HOH HOH . 
N 5 HOH B 30 330 39 HOH HOH . 
N 5 HOH B 31 331 40 HOH HOH . 
N 5 HOH B 32 332 41 HOH HOH . 
N 5 HOH B 33 333 42 HOH HOH . 
N 5 HOH B 34 334 46 HOH HOH . 
N 5 HOH B 35 335 48 HOH HOH . 
N 5 HOH B 36 336 49 HOH HOH . 
N 5 HOH B 37 337 52 HOH HOH . 
N 5 HOH B 38 338 54 HOH HOH . 
N 5 HOH B 39 339 58 HOH HOH . 
N 5 HOH B 40 340 59 HOH HOH . 
N 5 HOH B 41 341 62 HOH HOH . 
O 5 HOH C 1 101 29 HOH HOH . 
P 5 HOH D 1 101 45 HOH HOH . 
P 5 HOH D 2 102 55 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . I 4 42.898 45.644 52.059 1 61.9 ? C1 GOL 203 B 1 
HETATM 2 O O1 GOL . . . I 4 41.653 45.864 51.425 1 61.82 ? O1 GOL 203 B 1 
HETATM 3 C C2 GOL . . . I 4 44.006 45.744 51.012 1 61.68 ? C2 GOL 203 B 1 
HETATM 4 O O2 GOL . . . I 4 43.621 46.644 49.988 1 56.26 ? O2 GOL 203 B 1 
HETATM 5 C C3 GOL . . . I 4 45.301 46.219 51.661 1 60.8 ? C3 GOL 203 B 1 
HETATM 6 O O3 GOL . . . I 4 46.306 46.32 50.674 1 59.73 ? O3 GOL 203 B 1 
#
_model_server_stats.io_time_ms              22 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           308 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           6 
#