data_3W8L # _model_server_result.job_id -kricPDaqcV9GYcZiEiotw _model_server_result.datetime_utc '2024-11-06 20:39:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3w8l # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":501}' # _entry.id 3W8L # _exptl.entry_id 3W8L _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 660.035 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'INOSITOL HEXAKISPHOSPHATE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 96.14 _cell.angle_gamma 90 _cell.entry_id 3W8L _cell.length_a 70.141 _cell.length_b 56.568 _cell.length_c 95.542 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3W8L _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,E 1 1 B,C,D,F 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C6 H18 O24 P6' _chem_comp.formula_weight 660.035 _chem_comp.id IHP _chem_comp.mon_nstd_flag . _chem_comp.name 'INOSITOL HEXAKISPHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'MYO-INOSITOL HEXAKISPHOSPHATE;INOSITOL 1,2,3,4,5,6-HEXAKISPHOSPHATE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 IHP sing 152 n n C1 C6 IHP sing 153 n n C1 O11 IHP sing 154 n n C1 H1 IHP sing 155 n n C2 C3 IHP sing 156 n n C2 O12 IHP sing 157 n n C2 H2 IHP sing 158 n n C3 C4 IHP sing 159 n n C3 O13 IHP sing 160 n n C3 H3 IHP sing 161 n n C4 C5 IHP sing 162 n n C4 O14 IHP sing 163 n n C4 H4 IHP sing 164 n n C5 C6 IHP sing 165 n n C5 O15 IHP sing 166 n n C5 H5 IHP sing 167 n n C6 O16 IHP sing 168 n n C6 H6 IHP sing 169 n n O11 P1 IHP sing 170 n n P1 O21 IHP doub 171 n n P1 O31 IHP sing 172 n n P1 O41 IHP sing 173 n n O31 H31 IHP sing 174 n n O41 H41 IHP sing 175 n n O12 P2 IHP sing 176 n n P2 O22 IHP doub 177 n n P2 O32 IHP sing 178 n n P2 O42 IHP sing 179 n n O32 H32 IHP sing 180 n n O42 H42 IHP sing 181 n n O13 P3 IHP sing 182 n n P3 O23 IHP doub 183 n n P3 O33 IHP sing 184 n n P3 O43 IHP sing 185 n n O33 H33 IHP sing 186 n n O43 H43 IHP sing 187 n n O14 P4 IHP sing 188 n n P4 O24 IHP doub 189 n n P4 O34 IHP sing 190 n n P4 O44 IHP sing 191 n n O34 H34 IHP sing 192 n n O44 H44 IHP sing 193 n n O15 P5 IHP sing 194 n n P5 O25 IHP doub 195 n n P5 O35 IHP sing 196 n n P5 O45 IHP sing 197 n n O35 H35 IHP sing 198 n n O45 H45 IHP sing 199 n n O16 P6 IHP sing 200 n n P6 O26 IHP doub 201 n n P6 O36 IHP sing 202 n n P6 O46 IHP sing 203 n n O36 H36 IHP sing 204 n n O46 H46 IHP sing 205 n n # _atom_sites.entry_id 3W8L _atom_sites.fract_transf_matrix[1][1] 0.014257 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001534 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017678 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010527 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 IHP B 1 500 500 IHP I6P . D 2 IHP B 1 501 501 IHP I6P . E 3 HOH A 1 401 1 HOH HOH . E 3 HOH A 2 402 2 HOH HOH . E 3 HOH A 3 403 7 HOH HOH . E 3 HOH A 4 404 9 HOH HOH . E 3 HOH A 5 405 12 HOH HOH . E 3 HOH A 6 406 13 HOH HOH . E 3 HOH A 7 407 14 HOH HOH . E 3 HOH A 8 408 20 HOH HOH . E 3 HOH A 9 409 23 HOH HOH . E 3 HOH A 10 410 24 HOH HOH . E 3 HOH A 11 411 27 HOH HOH . E 3 HOH A 12 412 34 HOH HOH . E 3 HOH A 13 413 35 HOH HOH . E 3 HOH A 14 414 37 HOH HOH . E 3 HOH A 15 415 40 HOH HOH . E 3 HOH A 16 416 44 HOH HOH . E 3 HOH A 17 417 48 HOH HOH . E 3 HOH A 18 418 52 HOH HOH . E 3 HOH A 19 419 53 HOH HOH . E 3 HOH A 20 420 54 HOH HOH . E 3 HOH A 21 421 55 HOH HOH . E 3 HOH A 22 422 57 HOH HOH . E 3 HOH A 23 423 59 HOH HOH . E 3 HOH A 24 424 62 HOH HOH . E 3 HOH A 25 425 63 HOH HOH . E 3 HOH A 26 426 64 HOH HOH . E 3 HOH A 27 427 65 HOH HOH . E 3 HOH A 28 428 68 HOH HOH . E 3 HOH A 29 429 69 HOH HOH . E 3 HOH A 30 430 72 HOH HOH . E 3 HOH A 31 431 74 HOH HOH . E 3 HOH A 32 432 75 HOH HOH . E 3 HOH A 33 433 77 HOH HOH . E 3 HOH A 34 434 79 HOH HOH . E 3 HOH A 35 435 80 HOH HOH . E 3 HOH A 36 436 81 HOH HOH . E 3 HOH A 37 437 82 HOH HOH . E 3 HOH A 38 438 83 HOH HOH . E 3 HOH A 39 439 84 HOH HOH . E 3 HOH A 40 440 86 HOH HOH . E 3 HOH A 41 441 87 HOH HOH . E 3 HOH A 42 442 88 HOH HOH . E 3 HOH A 43 443 89 HOH HOH . E 3 HOH A 44 444 90 HOH HOH . E 3 HOH A 45 445 91 HOH HOH . E 3 HOH A 46 446 92 HOH HOH . E 3 HOH A 47 447 93 HOH HOH . E 3 HOH A 48 448 94 HOH HOH . E 3 HOH A 49 449 95 HOH HOH . E 3 HOH A 50 450 97 HOH HOH . E 3 HOH A 51 451 98 HOH HOH . E 3 HOH A 52 452 99 HOH HOH . E 3 HOH A 53 453 101 HOH HOH . E 3 HOH A 54 454 103 HOH HOH . E 3 HOH A 55 455 104 HOH HOH . E 3 HOH A 56 456 105 HOH HOH . F 3 HOH B 1 601 3 HOH HOH . F 3 HOH B 2 602 4 HOH HOH . F 3 HOH B 3 603 5 HOH HOH . F 3 HOH B 4 604 6 HOH HOH . F 3 HOH B 5 605 8 HOH HOH . F 3 HOH B 6 606 10 HOH HOH . F 3 HOH B 7 607 11 HOH HOH . F 3 HOH B 8 608 15 HOH HOH . F 3 HOH B 9 609 16 HOH HOH . F 3 HOH B 10 610 17 HOH HOH . F 3 HOH B 11 611 18 HOH HOH . F 3 HOH B 12 612 19 HOH HOH . F 3 HOH B 13 613 21 HOH HOH . F 3 HOH B 14 614 22 HOH HOH . F 3 HOH B 15 615 25 HOH HOH . F 3 HOH B 16 616 26 HOH HOH . F 3 HOH B 17 617 28 HOH HOH . F 3 HOH B 18 618 29 HOH HOH . F 3 HOH B 19 619 30 HOH HOH . F 3 HOH B 20 620 31 HOH HOH . F 3 HOH B 21 621 32 HOH HOH . F 3 HOH B 22 622 33 HOH HOH . F 3 HOH B 23 623 36 HOH HOH . F 3 HOH B 24 624 38 HOH HOH . F 3 HOH B 25 625 39 HOH HOH . F 3 HOH B 26 626 41 HOH HOH . F 3 HOH B 27 627 42 HOH HOH . F 3 HOH B 28 628 43 HOH HOH . F 3 HOH B 29 629 45 HOH HOH . F 3 HOH B 30 630 46 HOH HOH . F 3 HOH B 31 631 47 HOH HOH . F 3 HOH B 32 632 49 HOH HOH . F 3 HOH B 33 633 50 HOH HOH . F 3 HOH B 34 634 51 HOH HOH . F 3 HOH B 35 635 56 HOH HOH . F 3 HOH B 36 636 58 HOH HOH . F 3 HOH B 37 637 60 HOH HOH . F 3 HOH B 38 638 61 HOH HOH . F 3 HOH B 39 639 66 HOH HOH . F 3 HOH B 40 640 67 HOH HOH . F 3 HOH B 41 641 70 HOH HOH . F 3 HOH B 42 642 71 HOH HOH . F 3 HOH B 43 643 73 HOH HOH . F 3 HOH B 44 644 76 HOH HOH . F 3 HOH B 45 645 78 HOH HOH . F 3 HOH B 46 646 85 HOH HOH . F 3 HOH B 47 647 96 HOH HOH . F 3 HOH B 48 648 100 HOH HOH . F 3 HOH B 49 649 102 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 IHP . . . D 2 33.014 42.611 39.123 1 83.37 ? C1 IHP 501 B 1 HETATM 2 C C2 IHP . . . D 2 32.232 43.913 39.338 1 83.52 ? C2 IHP 501 B 1 HETATM 3 C C3 IHP . . . D 2 32.965 45.123 38.759 1 83.65 ? C3 IHP 501 B 1 HETATM 4 C C4 IHP . . . D 2 33.338 44.916 37.292 1 82.81 ? C4 IHP 501 B 1 HETATM 5 C C5 IHP . . . D 2 34.135 43.634 37.073 1 81.08 ? C5 IHP 501 B 1 HETATM 6 C C6 IHP . . . D 2 33.455 42.405 37.671 1 81.98 ? C6 IHP 501 B 1 HETATM 7 O O11 IHP . . . D 2 32.187 41.507 39.483 1 87.13 ? O11 IHP 501 B 1 HETATM 8 P P1 IHP . . . D 2 32.707 40.261 40.369 1 89.64 ? P1 IHP 501 B 1 HETATM 9 O O21 IHP . . . D 2 34.219 40.311 40.322 1 89.41 ? O21 IHP 501 B 1 HETATM 10 O O31 IHP . . . D 2 32.123 40.545 41.735 1 87.78 ? O31 IHP 501 B 1 HETATM 11 O O41 IHP . . . D 2 32.106 39.064 39.664 1 87.17 ? O41 IHP 501 B 1 HETATM 12 O O12 IHP . . . D 2 32.001 44.12 40.736 1 83.51 ? O12 IHP 501 B 1 HETATM 13 P P2 IHP . . . D 2 30.538 43.963 41.413 1 84.09 ? P2 IHP 501 B 1 HETATM 14 O O22 IHP . . . D 2 29.745 45.149 40.905 1 81.27 ? O22 IHP 501 B 1 HETATM 15 O O32 IHP . . . D 2 30.023 42.623 40.933 1 81.95 ? O32 IHP 501 B 1 HETATM 16 O O42 IHP . . . D 2 30.827 44.011 42.896 1 81.41 ? O42 IHP 501 B 1 HETATM 17 O O13 IHP . . . D 2 34.16 45.349 39.505 1 86.49 ? O13 IHP 501 B 1 HETATM 18 P P3 IHP . . . D 2 34.309 46.582 40.525 1 86.9 ? P3 IHP 501 B 1 HETATM 19 O O23 IHP . . . D 2 35.292 47.498 39.83 1 88.48 ? O23 IHP 501 B 1 HETATM 20 O O33 IHP . . . D 2 32.914 47.159 40.664 1 89 ? O33 IHP 501 B 1 HETATM 21 O O43 IHP . . . D 2 34.84 45.924 41.78 1 86.82 ? O43 IHP 501 B 1 HETATM 22 O O14 IHP . . . D 2 34.135 46.011 36.849 1 83.89 ? O14 IHP 501 B 1 HETATM 23 P P4 IHP . . . D 2 33.574 47.059 35.764 1 84.81 ? P4 IHP 501 B 1 HETATM 24 O O24 IHP . . . D 2 32.174 47.38 36.24 1 84.92 ? O24 IHP 501 B 1 HETATM 25 O O34 IHP . . . D 2 33.627 46.318 34.45 1 84.34 ? O34 IHP 501 B 1 HETATM 26 O O44 IHP . . . D 2 34.55 48.207 35.866 1 87.14 ? O44 IHP 501 B 1 HETATM 27 O O15 IHP . . . D 2 34.281 43.438 35.672 1 80.84 ? O15 IHP 501 B 1 HETATM 28 P P5 IHP . . . D 2 35.723 43.496 34.959 1 79.28 ? P5 IHP 501 B 1 HETATM 29 O O25 IHP . . . D 2 35.477 42.789 33.646 1 74.4 ? O25 IHP 501 B 1 HETATM 30 O O35 IHP . . . D 2 36.013 44.973 34.833 1 78.55 ? O35 IHP 501 B 1 HETATM 31 O O45 IHP . . . D 2 36.646 42.755 35.902 1 78.89 ? O45 IHP 501 B 1 HETATM 32 O O16 IHP . . . D 2 34.369 41.308 37.613 1 80.54 ? O16 IHP 501 B 1 HETATM 33 P P6 IHP . . . D 2 34.157 40.025 36.651 1 79.3 ? P6 IHP 501 B 1 HETATM 34 O O26 IHP . . . D 2 34.743 38.89 37.458 1 79.31 ? O26 IHP 501 B 1 HETATM 35 O O36 IHP . . . D 2 32.665 39.903 36.425 1 74.76 ? O36 IHP 501 B 1 HETATM 36 O O46 IHP . . . D 2 34.954 40.373 35.417 1 75.42 ? O46 IHP 501 B 1 # _model_server_stats.io_time_ms 63 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 19 _model_server_stats.query_time_ms 280 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 36 #