data_3W8M # _model_server_result.job_id tpw4KzYvV90y3SikcpZQZg _model_server_result.datetime_utc '2024-10-31 06:14:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3w8m # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 3W8M # _exptl.entry_id 3W8M _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 370.182 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "2,2'-[1,2-PHENYLENEBIS(NITRILOMETHYLIDYNE)]BIS[PHENOLATO]](2-)-N,N',O,O']-IRON" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3W8M _cell.length_a 98.212 _cell.length_b 98.212 _cell.length_c 32.662 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3W8M _symmetry.cell_setting ? _symmetry.Int_Tables_number 173 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 63' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 34 A HIS 32 1_555 B FE YOM . A YOM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.274 ? metalc ? metalc2 A OH TYR 77 A TYR 75 1_555 B FE YOM . A YOM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.114 ? # _chem_comp.formula 'C20 H14 Fe N2 O2 2' _chem_comp.formula_weight 370.182 _chem_comp.id YOM _chem_comp.mon_nstd_flag . _chem_comp.name "2,2'-[1,2-PHENYLENEBIS(NITRILOMETHYLIDYNE)]BIS[PHENOLATO]](2-)-N,N',O,O']-IRON" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'SALOPHEN IRON CHELATE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CA4 CA5 YOM sing 363 n y CA4 CA3 YOM doub 364 n y CA4 HA4 YOM sing 365 n n CA5 CA6 YOM doub 366 n y CA5 HA5 YOM sing 367 n n CA6 CA1 YOM sing 368 n y CA6 HA6 YOM sing 369 n n CA1 CA YOM sing 370 n n CA1 CA2 YOM doub 371 n y CA NA YOM doub 372 n n CA HA YOM sing 373 n n NA CC1 YOM sing 374 n n NA FE YOM sing 375 n n CC1 CC6 YOM doub 376 n y CC1 CC2 YOM sing 377 n y CC6 CC5 YOM sing 378 n y CC6 HC6 YOM sing 379 n n CA3 CA2 YOM sing 380 n y CA3 HA3 YOM sing 381 n n CA2 OA YOM sing 382 n n OA FE YOM sing 383 n n FE NB YOM sing 384 n n FE OB YOM sing 385 n n NB CC2 YOM sing 386 n n NB CB YOM doub 387 n n CC2 CC3 YOM doub 388 n y CC3 CC4 YOM sing 389 n y CC3 HC3 YOM sing 390 n n CC4 CC5 YOM doub 391 n y CC4 HC4 YOM sing 392 n n CC5 HC5 YOM sing 393 n n OB CB2 YOM sing 394 n n CB2 CB1 YOM sing 395 n y CB2 CB3 YOM doub 396 n y CB1 CB YOM sing 397 n n CB1 CB6 YOM doub 398 n y CB HB YOM sing 399 n n CB6 CB5 YOM sing 400 n y CB6 HB6 YOM sing 401 n n CB5 CB4 YOM doub 402 n y CB5 HB5 YOM sing 403 n n CB4 CB3 YOM sing 404 n y CB4 HB4 YOM sing 405 n n CB3 HB3 YOM sing 406 n n # _atom_sites.entry_id 3W8M _atom_sites.fract_transf_matrix[1][1] 0.010182 _atom_sites.fract_transf_matrix[1][2] 0.005879 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011757 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.030617 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 YOM A 1 201 201 YOM YOM . C 3 HOH A 1 301 1 HOH HOH . C 3 HOH A 2 302 2 HOH HOH . C 3 HOH A 3 303 3 HOH HOH . C 3 HOH A 4 304 4 HOH HOH . C 3 HOH A 5 305 5 HOH HOH . C 3 HOH A 6 306 6 HOH HOH . C 3 HOH A 7 307 7 HOH HOH . C 3 HOH A 8 308 8 HOH HOH . C 3 HOH A 9 309 9 HOH HOH . C 3 HOH A 10 310 10 HOH HOH . C 3 HOH A 11 311 11 HOH HOH . C 3 HOH A 12 312 12 HOH HOH . C 3 HOH A 13 313 13 HOH HOH . C 3 HOH A 14 314 14 HOH HOH . C 3 HOH A 15 315 15 HOH HOH . C 3 HOH A 16 316 16 HOH HOH . C 3 HOH A 17 317 17 HOH HOH . C 3 HOH A 18 318 18 HOH HOH . C 3 HOH A 19 319 19 HOH HOH . C 3 HOH A 20 320 20 HOH HOH . C 3 HOH A 21 321 21 HOH HOH . C 3 HOH A 22 322 22 HOH HOH . C 3 HOH A 23 323 23 HOH HOH . C 3 HOH A 24 324 24 HOH HOH . C 3 HOH A 25 325 25 HOH HOH . C 3 HOH A 26 326 26 HOH HOH . C 3 HOH A 27 327 27 HOH HOH . C 3 HOH A 28 328 28 HOH HOH . C 3 HOH A 29 329 29 HOH HOH . C 3 HOH A 30 330 30 HOH HOH . C 3 HOH A 31 331 31 HOH HOH . C 3 HOH A 32 332 32 HOH HOH . C 3 HOH A 33 333 33 HOH HOH . C 3 HOH A 34 334 34 HOH HOH . C 3 HOH A 35 335 35 HOH HOH . C 3 HOH A 36 336 36 HOH HOH . C 3 HOH A 37 337 37 HOH HOH . C 3 HOH A 38 338 38 HOH HOH . C 3 HOH A 39 339 39 HOH HOH . C 3 HOH A 40 340 40 HOH HOH . C 3 HOH A 41 341 41 HOH HOH . C 3 HOH A 42 342 42 HOH HOH . C 3 HOH A 43 343 43 HOH HOH . C 3 HOH A 44 344 44 HOH HOH . C 3 HOH A 45 345 45 HOH HOH . C 3 HOH A 46 346 46 HOH HOH . C 3 HOH A 47 347 47 HOH HOH . C 3 HOH A 48 348 48 HOH HOH . C 3 HOH A 49 349 49 HOH HOH . C 3 HOH A 50 350 50 HOH HOH . C 3 HOH A 51 351 51 HOH HOH . C 3 HOH A 52 352 52 HOH HOH . C 3 HOH A 53 353 53 HOH HOH . C 3 HOH A 54 354 54 HOH HOH . C 3 HOH A 55 355 55 HOH HOH . C 3 HOH A 56 356 56 HOH HOH . C 3 HOH A 57 357 57 HOH HOH . C 3 HOH A 58 358 58 HOH HOH . C 3 HOH A 59 359 59 HOH HOH . C 3 HOH A 60 360 60 HOH HOH . C 3 HOH A 61 361 61 HOH HOH . C 3 HOH A 62 362 62 HOH HOH . C 3 HOH A 63 363 63 HOH HOH . C 3 HOH A 64 364 64 HOH HOH . C 3 HOH A 65 365 65 HOH HOH . C 3 HOH A 66 366 66 HOH HOH . C 3 HOH A 67 367 67 HOH HOH . C 3 HOH A 68 368 68 HOH HOH . C 3 HOH A 69 369 69 HOH HOH . C 3 HOH A 70 370 70 HOH HOH . C 3 HOH A 71 371 71 HOH HOH . C 3 HOH A 72 372 72 HOH HOH . C 3 HOH A 73 373 73 HOH HOH . C 3 HOH A 74 374 74 HOH HOH . C 3 HOH A 75 375 75 HOH HOH . C 3 HOH A 76 376 76 HOH HOH . C 3 HOH A 77 377 77 HOH HOH . C 3 HOH A 78 378 78 HOH HOH . C 3 HOH A 79 379 79 HOH HOH . C 3 HOH A 80 380 80 HOH HOH . C 3 HOH A 81 381 81 HOH HOH . C 3 HOH A 82 382 82 HOH HOH . C 3 HOH A 83 383 83 HOH HOH . C 3 HOH A 84 384 84 HOH HOH . C 3 HOH A 85 385 85 HOH HOH . C 3 HOH A 86 386 86 HOH HOH . C 3 HOH A 87 387 87 HOH HOH . C 3 HOH A 88 388 88 HOH HOH . C 3 HOH A 89 389 89 HOH HOH . C 3 HOH A 90 390 90 HOH HOH . C 3 HOH A 91 391 91 HOH HOH . C 3 HOH A 92 392 92 HOH HOH . C 3 HOH A 93 393 93 HOH HOH . C 3 HOH A 94 394 94 HOH HOH . C 3 HOH A 95 395 95 HOH HOH . C 3 HOH A 96 396 96 HOH HOH . C 3 HOH A 97 397 97 HOH HOH . C 3 HOH A 98 398 98 HOH HOH . C 3 HOH A 99 399 99 HOH HOH . C 3 HOH A 100 400 100 HOH HOH . C 3 HOH A 101 401 101 HOH HOH . C 3 HOH A 102 402 102 HOH HOH . C 3 HOH A 103 403 103 HOH HOH . C 3 HOH A 104 404 104 HOH HOH . C 3 HOH A 105 405 105 HOH HOH . C 3 HOH A 106 406 106 HOH HOH . C 3 HOH A 107 407 107 HOH HOH . C 3 HOH A 108 408 108 HOH HOH . C 3 HOH A 109 409 109 HOH HOH . C 3 HOH A 110 410 110 HOH HOH . C 3 HOH A 111 411 111 HOH HOH . C 3 HOH A 112 412 112 HOH HOH . C 3 HOH A 113 413 113 HOH HOH . C 3 HOH A 114 414 114 HOH HOH . C 3 HOH A 115 415 115 HOH HOH . C 3 HOH A 116 416 116 HOH HOH . C 3 HOH A 117 417 117 HOH HOH . C 3 HOH A 118 418 118 HOH HOH . C 3 HOH A 119 419 119 HOH HOH . C 3 HOH A 120 420 120 HOH HOH . C 3 HOH A 121 421 121 HOH HOH . C 3 HOH A 122 422 122 HOH HOH . C 3 HOH A 123 423 123 HOH HOH . C 3 HOH A 124 424 124 HOH HOH . C 3 HOH A 125 425 125 HOH HOH . C 3 HOH A 126 426 126 HOH HOH . C 3 HOH A 127 427 127 HOH HOH . C 3 HOH A 128 428 128 HOH HOH . C 3 HOH A 129 429 129 HOH HOH . C 3 HOH A 130 430 130 HOH HOH . C 3 HOH A 131 431 131 HOH HOH . C 3 HOH A 132 432 132 HOH HOH . C 3 HOH A 133 433 133 HOH HOH . C 3 HOH A 134 434 134 HOH HOH . C 3 HOH A 135 435 135 HOH HOH . C 3 HOH A 136 436 136 HOH HOH . C 3 HOH A 137 437 137 HOH HOH . C 3 HOH A 138 438 138 HOH HOH . C 3 HOH A 139 439 139 HOH HOH . C 3 HOH A 140 440 140 HOH HOH . C 3 HOH A 141 441 141 HOH HOH . C 3 HOH A 142 442 142 HOH HOH . C 3 HOH A 143 443 143 HOH HOH . C 3 HOH A 144 444 144 HOH HOH . C 3 HOH A 145 445 145 HOH HOH . C 3 HOH A 146 446 146 HOH HOH . C 3 HOH A 147 447 147 HOH HOH . C 3 HOH A 148 448 148 HOH HOH . C 3 HOH A 149 449 149 HOH HOH . C 3 HOH A 150 450 150 HOH HOH . C 3 HOH A 151 451 151 HOH HOH . C 3 HOH A 152 452 152 HOH HOH . C 3 HOH A 153 453 153 HOH HOH . C 3 HOH A 154 454 154 HOH HOH . C 3 HOH A 155 455 155 HOH HOH . C 3 HOH A 156 456 156 HOH HOH . C 3 HOH A 157 457 157 HOH HOH . C 3 HOH A 158 458 158 HOH HOH . C 3 HOH A 159 459 159 HOH HOH . C 3 HOH A 160 460 160 HOH HOH . C 3 HOH A 161 461 161 HOH HOH . C 3 HOH A 162 462 162 HOH HOH . C 3 HOH A 163 463 163 HOH HOH . C 3 HOH A 164 464 164 HOH HOH . C 3 HOH A 165 465 165 HOH HOH . C 3 HOH A 166 466 166 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CA4 YOM . . . B 2 -18.065 -46.852 4.793 1 18.12 ? CA4 YOM 201 A 1 HETATM 2 C CA5 YOM . . . B 2 -16.916 -47.097 4.058 1 17.81 ? CA5 YOM 201 A 1 HETATM 3 C CA6 YOM . . . B 2 -16.193 -46.035 3.498 1 18.16 ? CA6 YOM 201 A 1 HETATM 4 C CA1 YOM . . . B 2 -16.644 -44.717 3.681 1 16.48 ? CA1 YOM 201 A 1 HETATM 5 C CA YOM . . . B 2 -15.809 -43.659 3.084 1 14.96 ? CA YOM 201 A 1 HETATM 6 N NA YOM . . . B 2 -16.037 -42.404 3.145 1 13.17 ? NA YOM 201 A 1 HETATM 7 C CC1 YOM . . . B 2 -15.134 -41.47 2.588 1 13.07 ? CC1 YOM 201 A 1 HETATM 8 C CC6 YOM . . . B 2 -14.091 -41.854 1.718 1 13.42 ? CC6 YOM 201 A 1 HETATM 9 C CA3 YOM . . . B 2 -18.507 -45.541 4.98 1 18.1 ? CA3 YOM 201 A 1 HETATM 10 C CA2 YOM . . . B 2 -17.79 -44.469 4.437 1 16.66 ? CA2 YOM 201 A 1 HETATM 11 O OA YOM . . . B 2 -18.237 -43.209 4.653 1 16.97 ? OA YOM 201 A 1 HETATM 12 FE FE YOM . . . B 2 -17.488 -41.514 4.374 1 12.47 ? FE YOM 201 A 1 HETATM 13 N NB YOM . . . B 2 -16.296 -39.781 3.823 1 12.85 ? NB YOM 201 A 1 HETATM 14 C CC2 YOM . . . B 2 -15.22 -40.135 2.962 1 12.91 ? CC2 YOM 201 A 1 HETATM 15 C CC3 YOM . . . B 2 -14.305 -39.19 2.442 1 13.5 ? CC3 YOM 201 A 1 HETATM 16 C CC4 YOM . . . B 2 -13.286 -39.596 1.574 1 13.7 ? CC4 YOM 201 A 1 HETATM 17 C CC5 YOM . . . B 2 -13.192 -40.926 1.233 1 13.73 ? CC5 YOM 201 A 1 HETATM 18 O OB YOM . . . B 2 -18.589 -40.318 5.514 1 12.32 ? OB YOM 201 A 1 HETATM 19 C CB2 YOM . . . B 2 -18.565 -38.988 5.671 1 12.91 ? CB2 YOM 201 A 1 HETATM 20 C CB1 YOM . . . B 2 -17.584 -38.17 5.106 1 13.46 ? CB1 YOM 201 A 1 HETATM 21 C CB YOM . . . B 2 -16.465 -38.615 4.243 1 13.15 ? CB YOM 201 A 1 HETATM 22 C CB6 YOM . . . B 2 -17.623 -36.784 5.317 1 14.07 ? CB6 YOM 201 A 1 HETATM 23 C CB5 YOM . . . B 2 -18.643 -36.214 6.086 1 14.36 ? CB5 YOM 201 A 1 HETATM 24 C CB4 YOM . . . B 2 -19.609 -37.033 6.626 1 14.5 ? CB4 YOM 201 A 1 HETATM 25 C CB3 YOM . . . B 2 -19.591 -38.404 6.44 1 14.14 ? CB3 YOM 201 A 1 # _model_server_stats.io_time_ms 66 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 238 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 25 #