data_3W8R # _model_server_result.job_id t8GjYsFTtdLHaOpXW_MmCA _model_server_result.datetime_utc '2024-12-26 19:23:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3w8r # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":301}' # _entry.id 3W8R # _exptl.entry_id 3W8R _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 243.217 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 4-AMINO-1-BETA-D-RIBOFURANOSYL-2(1H)-PYRIMIDINONE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3W8R _cell.length_a 68.3 _cell.length_b 124.1 _cell.length_c 60.7 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3W8R _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # _chem_comp.formula 'C9 H13 N3 O5' _chem_comp.formula_weight 243.217 _chem_comp.id CTN _chem_comp.mon_nstd_flag . _chem_comp.name 4-AMINO-1-BETA-D-RIBOFURANOSYL-2(1H)-PYRIMIDINONE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms CYTIDINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O5' C5' CTN sing 121 n n O5' H5' CTN sing 122 n n C5' C4' CTN sing 123 n n C5' "H5'1" CTN sing 124 n n C5' "H5'2" CTN sing 125 n n C4' O4' CTN sing 126 n n C4' C3' CTN sing 127 n n C4' H4' CTN sing 128 n n O4' C1' CTN sing 129 n n C1' N1 CTN sing 130 n n C1' C2' CTN sing 131 n n C1' H1' CTN sing 132 n n N1 C6 CTN sing 133 n y N1 C2 CTN sing 134 n y C6 C5 CTN doub 135 n y C6 H6 CTN sing 136 n n C5 C4 CTN sing 137 n y C5 H5 CTN sing 138 n n C4 N3 CTN doub 139 n y C4 N4 CTN sing 140 n n N3 C2 CTN sing 141 n y C2 O2 CTN doub 142 n n N4 HN41 CTN sing 143 n n N4 HN42 CTN sing 144 n n C2' O2' CTN sing 145 n n C2' C3' CTN sing 146 n n C2' H2' CTN sing 147 n n O2' H1 CTN sing 148 n n C3' O3' CTN sing 149 n n C3' H3' CTN sing 150 n n O3' H2 CTN sing 151 n n # _atom_sites.entry_id 3W8R _atom_sites.fract_transf_matrix[1][1] 0.014641 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008058 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016474 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CTN A 1 301 1 CTN CTN . D 3 ACP A 1 302 2 ACP ACP . E 2 CTN B 1 301 3 CTN CTN . F 3 ACP B 1 302 4 ACP ACP . G 4 HOH A 1 401 2 HOH HOH . G 4 HOH A 2 402 4 HOH HOH . G 4 HOH A 3 403 5 HOH HOH . G 4 HOH A 4 404 6 HOH HOH . G 4 HOH A 5 405 8 HOH HOH . G 4 HOH A 6 406 9 HOH HOH . G 4 HOH A 7 407 10 HOH HOH . G 4 HOH A 8 408 11 HOH HOH . G 4 HOH A 9 409 12 HOH HOH . G 4 HOH A 10 410 14 HOH HOH . G 4 HOH A 11 411 15 HOH HOH . G 4 HOH A 12 412 16 HOH HOH . G 4 HOH A 13 413 17 HOH HOH . G 4 HOH A 14 414 18 HOH HOH . G 4 HOH A 15 415 19 HOH HOH . G 4 HOH A 16 416 20 HOH HOH . G 4 HOH A 17 417 22 HOH HOH . G 4 HOH A 18 418 31 HOH HOH . G 4 HOH A 19 419 33 HOH HOH . G 4 HOH A 20 420 34 HOH HOH . G 4 HOH A 21 421 35 HOH HOH . G 4 HOH A 22 422 36 HOH HOH . H 4 HOH B 1 401 1 HOH HOH . H 4 HOH B 2 402 23 HOH HOH . H 4 HOH B 3 403 26 HOH HOH . H 4 HOH B 4 404 27 HOH HOH . H 4 HOH B 5 405 28 HOH HOH . H 4 HOH B 6 406 29 HOH HOH . H 4 HOH B 7 407 30 HOH HOH . H 4 HOH B 8 408 32 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O5' CTN . . . E 2 50.311 -4.51 32.111 1 37.51 ? O5' CTN 301 B 1 HETATM 2 C C5' CTN . . . E 2 50.483 -3.282 31.396 1 28.16 ? C5' CTN 301 B 1 HETATM 3 C C4' CTN . . . E 2 49.643 -2.319 32.21 1 27.97 ? C4' CTN 301 B 1 HETATM 4 O O4' CTN . . . E 2 50.271 -1.996 33.449 1 28.92 ? O4' CTN 301 B 1 HETATM 5 C C1' CTN . . . E 2 49.769 -0.722 33.844 1 26.88 ? C1' CTN 301 B 1 HETATM 6 N N1 CTN . . . E 2 50.731 -0.148 34.79 1 28.71 ? N1 CTN 301 B 1 HETATM 7 C C6 CTN . . . E 2 52.076 -0.097 34.494 1 31.21 ? C6 CTN 301 B 1 HETATM 8 C C5 CTN . . . E 2 52.968 0.465 35.41 1 29.33 ? C5 CTN 301 B 1 HETATM 9 C C4 CTN . . . E 2 52.451 0.959 36.617 1 29.13 ? C4 CTN 301 B 1 HETATM 10 N N3 CTN . . . E 2 51.106 0.859 36.829 1 27.65 ? N3 CTN 301 B 1 HETATM 11 C C2 CTN . . . E 2 50.261 0.326 35.917 1 28.06 ? C2 CTN 301 B 1 HETATM 12 O O2 CTN . . . E 2 49.03 0.239 36.097 1 30.08 ? O2 CTN 301 B 1 HETATM 13 N N4 CTN . . . E 2 53.271 1.512 37.549 1 29.07 ? N4 CTN 301 B 1 HETATM 14 C C2' CTN . . . E 2 49.779 0.041 32.523 1 28.42 ? C2' CTN 301 B 1 HETATM 15 O O2' CTN . . . E 2 48.848 1.081 32.547 1 25.66 ? O2' CTN 301 B 1 HETATM 16 C C3' CTN . . . E 2 49.486 -1.026 31.476 1 30.64 ? C3' CTN 301 B 1 HETATM 17 O O3' CTN . . . E 2 48.163 -1.039 30.913 1 29.23 ? O3' CTN 301 B 1 # _model_server_stats.io_time_ms 58 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 24 _model_server_stats.query_time_ms 322 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 17 #