data_3W9C # _model_server_result.job_id yx7Lmvs4ElweMnAdQ2x2sQ _model_server_result.datetime_utc '2024-11-29 14:23:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3w9c # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":505}' # _entry.id 3W9C # _exptl.entry_id 3W9C _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 95.57 _cell.angle_gamma 90 _cell.entry_id 3W9C _cell.length_a 101.717 _cell.length_b 77.991 _cell.length_c 60.016 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3W9C _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 359 A CYS 357 1_555 C FE HEM . A HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.231 ? metalc ? metalc2 B SG CYS 41 B CYS 39 1_555 H FE1 FES . B FES 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.218 ? metalc ? metalc3 B SG CYS 47 B CYS 45 1_555 H FE1 FES . B FES 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.229 ? metalc ? metalc4 B SG CYS 50 B CYS 48 1_555 H FE2 FES . B FES 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.267 ? metalc ? metalc5 B SG CYS 88 B CYS 86 1_555 H FE2 FES . B FES 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.297 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 133 n n C1 C2 GOL sing 134 n n C1 H11 GOL sing 135 n n C1 H12 GOL sing 136 n n O1 HO1 GOL sing 137 n n C2 O2 GOL sing 138 n n C2 C3 GOL sing 139 n n C2 H2 GOL sing 140 n n O2 HO2 GOL sing 141 n n C3 O3 GOL sing 142 n n C3 H31 GOL sing 143 n n C3 H32 GOL sing 144 n n O3 HO3 GOL sing 145 n n # _atom_sites.entry_id 3W9C _atom_sites.fract_transf_matrix[1][1] 0.009831 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000959 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012822 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016741 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 HEM A 1 501 415 HEM HEM . D 4 SO4 A 1 502 501 SO4 SO4 . E 4 SO4 A 1 503 503 SO4 SO4 . F 4 SO4 A 1 504 504 SO4 SO4 . G 5 GOL A 1 505 601 GOL GOL . H 6 FES B 1 201 109 FES FES . I 4 SO4 B 1 202 502 SO4 SO4 . J 7 HOH A 1 601 1 HOH HOH . J 7 HOH A 2 602 2 HOH HOH . J 7 HOH A 3 603 4 HOH HOH . J 7 HOH A 4 604 5 HOH HOH . J 7 HOH A 5 605 6 HOH HOH . J 7 HOH A 6 606 8 HOH HOH . J 7 HOH A 7 607 9 HOH HOH . J 7 HOH A 8 608 10 HOH HOH . J 7 HOH A 9 609 11 HOH HOH . J 7 HOH A 10 610 12 HOH HOH . J 7 HOH A 11 611 13 HOH HOH . J 7 HOH A 12 612 14 HOH HOH . J 7 HOH A 13 613 15 HOH HOH . J 7 HOH A 14 614 16 HOH HOH . J 7 HOH A 15 615 17 HOH HOH . J 7 HOH A 16 616 20 HOH HOH . J 7 HOH A 17 617 21 HOH HOH . J 7 HOH A 18 618 22 HOH HOH . J 7 HOH A 19 619 24 HOH HOH . J 7 HOH A 20 620 25 HOH HOH . J 7 HOH A 21 621 27 HOH HOH . J 7 HOH A 22 622 28 HOH HOH . J 7 HOH A 23 623 30 HOH HOH . J 7 HOH A 24 624 33 HOH HOH . J 7 HOH A 25 625 34 HOH HOH . J 7 HOH A 26 626 35 HOH HOH . K 7 HOH B 1 301 3 HOH HOH . K 7 HOH B 2 302 7 HOH HOH . K 7 HOH B 3 303 18 HOH HOH . K 7 HOH B 4 304 19 HOH HOH . K 7 HOH B 5 305 23 HOH HOH . K 7 HOH B 6 306 26 HOH HOH . K 7 HOH B 7 307 29 HOH HOH . K 7 HOH B 8 308 31 HOH HOH . K 7 HOH B 9 309 32 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . G 5 21.735 -3.999 20.614 1 41.85 ? C1 GOL 505 A 1 HETATM 2 O O1 GOL . . . G 5 21.424 -4.639 21.845 1 44.11 ? O1 GOL 505 A 1 HETATM 3 C C2 GOL . . . G 5 20.849 -2.818 20.197 1 41.55 ? C2 GOL 505 A 1 HETATM 4 O O2 GOL . . . G 5 21.747 -1.797 19.812 1 41.72 ? O2 GOL 505 A 1 HETATM 5 C C3 GOL . . . G 5 19.814 -2.343 21.249 1 41.03 ? C3 GOL 505 A 1 HETATM 6 O O3 GOL . . . G 5 18.629 -1.671 20.749 1 37 ? O3 GOL 505 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 321 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 6 #