data_3W9J
#
_model_server_result.job_id            '_VFa_Qeh7vgNYPum7XHmtg' 
_model_server_result.datetime_utc      '2024-11-13 04:33:14' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3w9j 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":2001}' 
#
_entry.id    3W9J 
#
_exptl.entry_id    3W9J 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              693.776 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '[{2-[({[(3R)-1-{8-[(4-tert-butyl-1,3-thiazol-2-yl)carbamoyl]-4-oxo-3-[(E)-2-(1H-tetrazol-5-yl)ethenyl]-4H-pyrido[1,2-a]pyrimidin-2-yl}piperidin-3-yl]oxy}carbonyl)amino]ethyl}(dimethyl)ammonio]acetate' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         85.75 
_cell.angle_beta          68.93 
_cell.angle_gamma         87.39 
_cell.entry_id            3W9J 
_cell.length_a            126.204 
_cell.length_b            137.034 
_cell.length_c            152.275 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3W9J 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA trimeric 3 author_and_software_defined_assembly 1 
PISA trimeric 3 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,G,H,I,J,K,L,M,N 1 1 
D,E,F,O,P,Q,R,S,T,U,V,W 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 J N N 
? 3 R N N 
#
_chem_comp.formula           'C31 H39 N11 O6 S' 
_chem_comp.formula_weight    693.776 
_chem_comp.id                P9D 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '[{2-[({[(3R)-1-{8-[(4-tert-butyl-1,3-thiazol-2-yl)carbamoyl]-4-oxo-3-[(E)-2-(1H-tetrazol-5-yl)ethenyl]-4H-pyrido[1,2-a]pyrimidin-2-yl}piperidin-3-yl]oxy}carbonyl)amino]ethyl}(dimethyl)ammonio]acetate' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 P9D sing 317 n n 
C2 C3 P9D sing 318 n n 
C2 C4 P9D sing 319 n n 
C2 C5 P9D sing 320 n n 
C4 N6 P9D sing 321 n y 
C4 C9 P9D doub 322 n y 
N6 C7 P9D doub 323 n y 
C7 S8 P9D sing 324 n y 
C7 N10 P9D sing 325 n n 
S8 C9 P9D sing 326 n y 
N10 C11 P9D sing 327 n n 
C11 C12 P9D sing 328 n n 
C11 O13 P9D doub 329 n n 
C12 C14 P9D doub 330 n n 
C12 C18 P9D sing 331 n n 
C14 C15 P9D sing 332 n n 
C15 N16 P9D sing 333 n n 
C15 N19 P9D doub 334 n n 
N16 C17 P9D sing 335 n n 
N16 C20 P9D sing 336 n n 
C17 C18 P9D doub 337 n n 
N19 C21 P9D sing 338 n n 
C20 C22 P9D sing 339 n n 
C20 O23 P9D doub 340 n n 
C21 C22 P9D doub 341 n n 
C21 N24 P9D sing 342 n n 
C22 C25 P9D sing 343 n n 
N24 C32 P9D sing 344 n n 
N24 C37 P9D sing 345 n n 
C25 C26 P9D doub 346 e n 
C26 C27 P9D sing 347 n n 
C27 N28 P9D doub 348 n y 
C27 N31 P9D sing 349 n y 
N28 N29 P9D sing 350 n y 
N29 N30 P9D doub 351 n y 
N30 N31 P9D sing 352 n y 
C32 C33 P9D sing 353 n n 
C33 O34 P9D sing 354 n n 
C33 C35 P9D sing 355 n n 
O34 C38 P9D sing 356 n n 
C35 C36 P9D sing 357 n n 
C36 C37 P9D sing 358 n n 
C38 N39 P9D sing 359 n n 
C38 O44 P9D doub 360 n n 
N39 C40 P9D sing 361 n n 
C40 C41 P9D sing 362 n n 
C41 N42 P9D sing 363 n n 
N42 C43 P9D sing 364 n n 
N42 C48 P9D sing 365 n n 
N42 C49 P9D sing 366 n n 
C43 C45 P9D sing 367 n n 
C45 O46 P9D sing 368 n n 
C45 O47 P9D doub 369 n n 
C1 H1 P9D sing 370 n n 
C1 H1A P9D sing 371 n n 
C1 H1B P9D sing 372 n n 
C3 H3 P9D sing 373 n n 
C3 H3A P9D sing 374 n n 
C3 H3B P9D sing 375 n n 
C5 H5 P9D sing 376 n n 
C5 H5A P9D sing 377 n n 
C5 H5B P9D sing 378 n n 
C9 H9 P9D sing 379 n n 
N10 HN10 P9D sing 380 n n 
C14 H14 P9D sing 381 n n 
C17 H17 P9D sing 382 n n 
C18 H18 P9D sing 383 n n 
C25 H25 P9D sing 384 n n 
C26 H26 P9D sing 385 n n 
N31 HN31 P9D sing 386 n n 
C32 H32 P9D sing 387 n n 
C32 H32A P9D sing 388 n n 
C33 H33 P9D sing 389 n n 
C35 H35 P9D sing 390 n n 
C35 H35A P9D sing 391 n n 
C36 H36 P9D sing 392 n n 
C36 H36A P9D sing 393 n n 
C37 H37 P9D sing 394 n n 
C37 H37A P9D sing 395 n n 
N39 HN39 P9D sing 396 n n 
C40 H40 P9D sing 397 n n 
C40 H40A P9D sing 398 n n 
C41 H41 P9D sing 399 n n 
C41 H41A P9D sing 400 n n 
C43 H43 P9D sing 401 n n 
C43 H43A P9D sing 402 n n 
C48 H48 P9D sing 403 n n 
C48 H48A P9D sing 404 n n 
C48 H48B P9D sing 405 n n 
C49 H49 P9D sing 406 n n 
C49 H49A P9D sing 407 n n 
C49 H49B P9D sing 408 n n 
#
_atom_sites.entry_id                     3W9J 
_atom_sites.fract_transf_matrix[1][1]    0.007924 
_atom_sites.fract_transf_matrix[1][2]    -0.000361 
_atom_sites.fract_transf_matrix[1][3]    -0.003036 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007305 
_atom_sites.fract_transf_matrix[2][3]    -0.000454 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007051 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 2 LMT A 1 2001 2001 LMT LMT . 
H 2 LMT A 1 2002 2002 LMT LMT . 
I 2 LMT A 1 2003 2003 LMT LMT . 
J 3 P9D B 1 2001 2001 P9D P9D . 
K 2 LMT B 1 2002 2002 LMT LMT . 
L 2 LMT B 1 2003 2003 LMT LMT . 
M 2 LMT B 1 2004 2004 LMT LMT . 
N 2 LMT C 1 2001 2001 LMT LMT . 
O 2 LMT D 1 2001 2001 LMT LMT . 
P 2 LMT D 1 2002 2002 LMT LMT . 
Q 2 LMT D 1 2003 2003 LMT LMT . 
R 3 P9D E 1 2001 2001 P9D P9D . 
S 2 LMT E 1 2002 2002 LMT LMT . 
T 2 LMT E 1 2003 2003 LMT LMT . 
U 2 LMT E 1 2004 2004 LMT LMT . 
V 2 LMT F 1 2001 2001 LMT LMT . 
W 2 LMT F 1 2002 2002 LMT LMT . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 P9D . . . J 3 28.702 19.837 -66.123 0.9 73.52 ? C1 P9D 2001 B 1 
HETATM 2 C C2 P9D . . . J 3 29.255 21.17 -65.679 0.9 73.85 ? C2 P9D 2001 B 1 
HETATM 3 C C3 P9D . . . J 3 28.861 22.202 -66.723 0.9 72.71 ? C3 P9D 2001 B 1 
HETATM 4 C C4 P9D . . . J 3 30.769 21.041 -65.555 0.9 80.83 ? C4 P9D 2001 B 1 
HETATM 5 C C5 P9D . . . J 3 28.604 21.556 -64.354 0.9 74.83 ? C5 P9D 2001 B 1 
HETATM 6 N N6 P9D . . . J 3 31.359 20.539 -64.415 0.9 84.26 ? N6 P9D 2001 B 1 
HETATM 7 C C7 P9D . . . J 3 32.706 20.552 -64.615 0.9 78.3 ? C7 P9D 2001 B 1 
HETATM 8 S S8 P9D . . . J 3 33.132 21.124 -66.074 0.9 73.75 ? S8 P9D 2001 B 1 
HETATM 9 C C9 P9D . . . J 3 31.609 21.418 -66.616 0.9 80.67 ? C9 P9D 2001 B 1 
HETATM 10 N N10 P9D . . . J 3 33.63 20.141 -63.71 0.9 74.36 ? N10 P9D 2001 B 1 
HETATM 11 C C11 P9D . . . J 3 34.514 19.225 -64.071 0.9 66.49 ? C11 P9D 2001 B 1 
HETATM 12 C C12 P9D . . . J 3 35.122 18.292 -63.07 0.9 62 ? C12 P9D 2001 B 1 
HETATM 13 O O13 P9D . . . J 3 34.833 19.113 -65.24 0.9 64.07 ? O13 P9D 2001 B 1 
HETATM 14 C C14 P9D . . . J 3 34.338 17.585 -62.161 0.9 64.62 ? C14 P9D 2001 B 1 
HETATM 15 C C15 P9D . . . J 3 34.911 16.699 -61.243 0.9 62.99 ? C15 P9D 2001 B 1 
HETATM 16 N N16 P9D . . . J 3 36.341 16.534 -61.263 0.9 56.32 ? N16 P9D 2001 B 1 
HETATM 17 C C17 P9D . . . J 3 37.132 17.255 -62.218 0.9 58.72 ? C17 P9D 2001 B 1 
HETATM 18 C C18 P9D . . . J 3 36.493 18.111 -63.101 0.9 61.8 ? C18 P9D 2001 B 1 
HETATM 19 N N19 P9D . . . J 3 34.14 16.008 -60.351 0.9 66.41 ? N19 P9D 2001 B 1 
HETATM 20 C C20 P9D . . . J 3 36.945 15.637 -60.342 0.9 53.08 ? C20 P9D 2001 B 1 
HETATM 21 C C21 P9D . . . J 3 34.645 15.145 -59.428 0.9 64.29 ? C21 P9D 2001 B 1 
HETATM 22 C C22 P9D . . . J 3 36.107 14.925 -59.403 0.9 55.71 ? C22 P9D 2001 B 1 
HETATM 23 O O23 P9D . . . J 3 38.151 15.444 -60.31 0.9 53.49 ? O23 P9D 2001 B 1 
HETATM 24 N N24 P9D . . . J 3 33.849 14.42 -58.507 0.9 72.76 ? N24 P9D 2001 B 1 
HETATM 25 C C25 P9D . . . J 3 36.732 14.01 -58.449 0.9 53.24 ? C25 P9D 2001 B 1 
HETATM 26 C C26 P9D . . . J 3 36.774 14.446 -57.218 0.9 53.36 ? C26 P9D 2001 B 1 
HETATM 27 C C27 P9D . . . J 3 37.35 13.639 -56.133 0.9 56.9 ? C27 P9D 2001 B 1 
HETATM 28 N N28 P9D . . . J 3 38.585 13.157 -56.183 0.9 56.12 ? N28 P9D 2001 B 1 
HETATM 29 N N29 P9D . . . J 3 38.697 12.481 -54.961 0.9 59.96 ? N29 P9D 2001 B 1 
HETATM 30 N N30 P9D . . . J 3 37.485 12.607 -54.242 0.9 62.67 ? N30 P9D 2001 B 1 
HETATM 31 N N31 P9D . . . J 3 36.623 13.369 -55.034 0.9 59.83 ? N31 P9D 2001 B 1 
HETATM 32 C C32 P9D . . . J 3 32.51 14.979 -58.236 0.9 71.02 ? C32 P9D 2001 B 1 
HETATM 33 C C33 P9D . . . J 3 31.599 14.017 -57.414 0.9 77.83 ? C33 P9D 2001 B 1 
HETATM 34 O O34 P9D . . . J 3 31.437 14.344 -56.008 0.9 71.12 ? O34 P9D 2001 B 1 
HETATM 35 C C35 P9D . . . J 3 31.899 12.507 -57.572 0.9 75.31 ? C35 P9D 2001 B 1 
HETATM 36 C C36 P9D . . . J 3 33.382 12.211 -57.725 0.9 74.95 ? C36 P9D 2001 B 1 
HETATM 37 C C37 P9D . . . J 3 33.877 13.009 -58.922 0.9 73.87 ? C37 P9D 2001 B 1 
HETATM 38 C C38 P9D . . . J 3 32.562 14.929 -55.316 0.9 67.46 ? C38 P9D 2001 B 1 
HETATM 39 N N39 P9D . . . J 3 32.292 15.778 -54.348 0.9 71.5 ? N39 P9D 2001 B 1 
HETATM 40 C C40 P9D . . . J 3 33.361 16.375 -53.585 0.9 70.17 ? C40 P9D 2001 B 1 
HETATM 41 C C41 P9D . . . J 3 33.226 15.973 -52.125 0.9 74.42 ? C41 P9D 2001 B 1 
HETATM 42 N N42 P9D . . . J 3 34.336 15.147 -51.619 0.9 75.35 ? N42 P9D 2001 B 1 
HETATM 43 C C43 P9D . . . J 3 33.819 14.426 -50.452 0.9 85.49 ? C43 P9D 2001 B 1 
HETATM 44 O O44 P9D . . . J 3 33.696 14.648 -55.614 0.9 64.97 ? O44 P9D 2001 B 1 
HETATM 45 C C45 P9D . . . J 3 34.871 14.191 -49.395 0.9 97.47 ? C45 P9D 2001 B 1 
HETATM 46 O O46 P9D . . . J 3 34.942 15.008 -48.45 0.9 105.34 ? O46 P9D 2001 B 1 
HETATM 47 O O47 P9D . . . J 3 35.623 13.194 -49.505 0.9 108.75 ? O47 P9D 2001 B 1 
HETATM 48 C C48 P9D . . . J 3 34.797 14.123 -52.572 0.9 75.32 ? C48 P9D 2001 B 1 
HETATM 49 C C49 P9D . . . J 3 35.433 16.048 -51.233 0.9 75.72 ? C49 P9D 2001 B 1 
#
_model_server_stats.io_time_ms              23 
_model_server_stats.parse_time_ms           36 
_model_server_stats.create_model_time_ms    378 
_model_server_stats.query_time_ms           274 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           49 
#