data_3W9J
#
_model_server_result.job_id            Oy7iB1eLdYUpgKV1DTVqhA 
_model_server_result.datetime_utc      '2024-11-13 04:29:25' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3w9j 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"O","auth_seq_id":2001}' 
#
_entry.id    3W9J 
#
_exptl.entry_id    3W9J 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              510.615 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            DODECYL-BETA-D-MALTOSIDE 
_entity.pdbx_number_of_molecules    15 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         85.75 
_cell.angle_beta          68.93 
_cell.angle_gamma         87.39 
_cell.entry_id            3W9J 
_cell.length_a            126.204 
_cell.length_b            137.034 
_cell.length_c            152.275 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3W9J 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA trimeric 3 author_and_software_defined_assembly 1 
PISA trimeric 3 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,G,H,I,J,K,L,M,N 1 1 
D,E,F,O,P,Q,R,S,T,U,V,W 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 G N N 
? 2 H N N 
? 2 I N N 
? 2 K N N 
? 2 L N N 
? 2 M N N 
? 2 N N N 
? 2 O N N 
? 2 P N N 
? 2 Q N N 
? 2 S N N 
? 2 T N N 
? 2 U N N 
? 2 V N N 
? 2 W N N 
#
_chem_comp.formula           'C24 H46 O11' 
_chem_comp.formula_weight    510.615 
_chem_comp.id                LMT 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              DODECYL-BETA-D-MALTOSIDE 
_chem_comp.type              d-saccharide 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1B C2B LMT sing 192 n n 
C1B O1B LMT sing 193 n n 
C1B O5B LMT sing 194 n n 
C1B H1B LMT sing 195 n n 
C2B C3B LMT sing 196 n n 
C2B O2B LMT sing 197 n n 
C2B H2B LMT sing 198 n n 
C3B C4B LMT sing 199 n n 
C3B O3B LMT sing 200 n n 
C3B H3B LMT sing 201 n n 
C4B C5B LMT sing 202 n n 
C4B O4' LMT sing 203 n n 
C4B H4B LMT sing 204 n n 
C5B C6B LMT sing 205 n n 
C5B O5B LMT sing 206 n n 
C5B H5B LMT sing 207 n n 
C6B O6B LMT sing 208 n n 
C6B "H6'2" LMT sing 209 n n 
C6B "H6'1" LMT sing 210 n n 
O1B C4' LMT sing 211 n n 
O2B H2O1 LMT sing 212 n n 
O3B H3O1 LMT sing 213 n n 
O4' H4O1 LMT sing 214 n n 
O6B H6B LMT sing 215 n n 
C1' C2' LMT sing 216 n n 
C1' O1' LMT sing 217 n n 
C1' O5' LMT sing 218 n n 
C1' H1' LMT sing 219 n n 
C2' C3' LMT sing 220 n n 
C2' O2' LMT sing 221 n n 
C2' H2' LMT sing 222 n n 
C3' C4' LMT sing 223 n n 
C3' O3' LMT sing 224 n n 
C3' H3' LMT sing 225 n n 
C4' C5' LMT sing 226 n n 
C4' H4' LMT sing 227 n n 
C5' C6' LMT sing 228 n n 
C5' O5' LMT sing 229 n n 
C5' H5' LMT sing 230 n n 
C6' O6' LMT sing 231 n n 
C6' H6D LMT sing 232 n n 
C6' H6E LMT sing 233 n n 
O1' C1 LMT sing 234 n n 
O2' H2O2 LMT sing 235 n n 
O3' H3O2 LMT sing 236 n n 
O6' H6' LMT sing 237 n n 
C1 C2 LMT sing 238 n n 
C1 H12 LMT sing 239 n n 
C1 H11 LMT sing 240 n n 
C2 C3 LMT sing 241 n n 
C2 H22 LMT sing 242 n n 
C2 H21 LMT sing 243 n n 
C3 C4 LMT sing 244 n n 
C3 H32 LMT sing 245 n n 
C3 H31 LMT sing 246 n n 
C4 C5 LMT sing 247 n n 
C4 H42 LMT sing 248 n n 
C4 H41 LMT sing 249 n n 
C5 C6 LMT sing 250 n n 
C5 H52 LMT sing 251 n n 
C5 H51 LMT sing 252 n n 
C6 C7 LMT sing 253 n n 
C6 H62 LMT sing 254 n n 
C6 H61 LMT sing 255 n n 
C7 C8 LMT sing 256 n n 
C7 H72 LMT sing 257 n n 
C7 H71 LMT sing 258 n n 
C8 C9 LMT sing 259 n n 
C8 H82 LMT sing 260 n n 
C8 H81 LMT sing 261 n n 
C9 C10 LMT sing 262 n n 
C9 H92 LMT sing 263 n n 
C9 H91 LMT sing 264 n n 
C10 C11 LMT sing 265 n n 
C10 H102 LMT sing 266 n n 
C10 H101 LMT sing 267 n n 
C11 C12 LMT sing 268 n n 
C11 H112 LMT sing 269 n n 
C11 H111 LMT sing 270 n n 
C12 H123 LMT sing 271 n n 
C12 H122 LMT sing 272 n n 
C12 H121 LMT sing 273 n n 
#
_atom_sites.entry_id                     3W9J 
_atom_sites.fract_transf_matrix[1][1]    0.007924 
_atom_sites.fract_transf_matrix[1][2]    -0.000361 
_atom_sites.fract_transf_matrix[1][3]    -0.003036 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007305 
_atom_sites.fract_transf_matrix[2][3]    -0.000454 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007051 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 2 LMT A 1 2001 2001 LMT LMT . 
H 2 LMT A 1 2002 2002 LMT LMT . 
I 2 LMT A 1 2003 2003 LMT LMT . 
J 3 P9D B 1 2001 2001 P9D P9D . 
K 2 LMT B 1 2002 2002 LMT LMT . 
L 2 LMT B 1 2003 2003 LMT LMT . 
M 2 LMT B 1 2004 2004 LMT LMT . 
N 2 LMT C 1 2001 2001 LMT LMT . 
O 2 LMT D 1 2001 2001 LMT LMT . 
P 2 LMT D 1 2002 2002 LMT LMT . 
Q 2 LMT D 1 2003 2003 LMT LMT . 
R 3 P9D E 1 2001 2001 P9D P9D . 
S 2 LMT E 1 2002 2002 LMT LMT . 
T 2 LMT E 1 2003 2003 LMT LMT . 
U 2 LMT E 1 2004 2004 LMT LMT . 
V 2 LMT F 1 2001 2001 LMT LMT . 
W 2 LMT F 1 2002 2002 LMT LMT . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1B LMT . . . O 2 17.305 -26.913 31.379 0.6 81.48 ? C1B LMT 2001 D 1 
HETATM 2 C C2B LMT . . . O 2 16.011 -27.21 30.578 0.6 75.2 ? C2B LMT 2001 D 1 
HETATM 3 C C3B LMT . . . O 2 16.213 -28.222 29.448 0.6 68.54 ? C3B LMT 2001 D 1 
HETATM 4 C C4B LMT . . . O 2 17.33 -27.782 28.496 0.6 70.78 ? C4B LMT 2001 D 1 
HETATM 5 C C5B LMT . . . O 2 18.603 -27.316 29.22 0.6 78.61 ? C5B LMT 2001 D 1 
HETATM 6 C C6B LMT . . . O 2 19.046 -25.922 28.726 0.6 76.57 ? C6B LMT 2001 D 1 
HETATM 7 O O1B LMT . . . O 2 17.288 -27.262 32.808 0.6 72.96 ? O1B LMT 2001 D 1 
HETATM 8 O O2B LMT . . . O 2 14.932 -27.607 31.428 0.6 76.51 ? O2B LMT 2001 D 1 
HETATM 9 O O3B LMT . . . O 2 14.982 -28.319 28.734 0.6 65.18 ? O3B LMT 2001 D 1 
HETATM 10 O O4' LMT . . . O 2 17.708 -28.854 27.634 0.6 65.46 ? O4' LMT 2001 D 1 
HETATM 11 O O5B LMT . . . O 2 18.495 -27.393 30.677 0.6 89.81 ? O5B LMT 2001 D 1 
HETATM 12 O O6B LMT . . . O 2 20.227 -25.967 27.905 0.6 62.9 ? O6B LMT 2001 D 1 
HETATM 13 C C1' LMT . . . O 2 18.645 -30.263 35.152 0.6 64.18 ? C1' LMT 2001 D 1 
HETATM 14 C C2' LMT . . . O 2 18.266 -30.729 33.753 0.6 65.64 ? C2' LMT 2001 D 1 
HETATM 15 C C3' LMT . . . O 2 18.085 -29.562 32.813 0.6 69.92 ? C3' LMT 2001 D 1 
HETATM 16 C C4' LMT . . . O 2 16.99 -28.598 33.259 0.6 69.49 ? C4' LMT 2001 D 1 
HETATM 17 C C5' LMT . . . O 2 16.711 -28.667 34.781 0.6 70.77 ? C5' LMT 2001 D 1 
HETATM 18 C C6' LMT . . . O 2 15.429 -29.498 35.064 0.6 77.76 ? C6' LMT 2001 D 1 
HETATM 19 O O1' LMT . . . O 2 18.599 -31.431 36.01 0.6 56.87 ? O1' LMT 2001 D 1 
HETATM 20 O O2' LMT . . . O 2 19.341 -31.504 33.236 0.6 67.05 ? O2' LMT 2001 D 1 
HETATM 21 O O3' LMT . . . O 2 17.735 -30.115 31.537 0.6 79.07 ? O3' LMT 2001 D 1 
HETATM 22 O O5' LMT . . . O 2 17.851 -29.11 35.581 0.6 64.08 ? O5' LMT 2001 D 1 
HETATM 23 O O6' LMT . . . O 2 14.311 -28.781 35.642 0.6 76.11 ? O6' LMT 2001 D 1 
HETATM 24 C C1 LMT . . . O 2 19.831 -32.179 36.124 0.6 50.88 ? C1 LMT 2001 D 1 
HETATM 25 C C2 LMT . . . O 2 19.61 -33.686 36.027 0.6 47.92 ? C2 LMT 2001 D 1 
HETATM 26 C C3 LMT . . . O 2 20.602 -34.503 36.852 0.6 47.5 ? C3 LMT 2001 D 1 
HETATM 27 C C4 LMT . . . O 2 20.892 -35.843 36.163 0.6 52.67 ? C4 LMT 2001 D 1 
HETATM 28 C C5 LMT . . . O 2 20.619 -37.062 37.06 0.6 51.89 ? C5 LMT 2001 D 1 
HETATM 29 C C6 LMT . . . O 2 21.197 -38.404 36.582 0.6 48.25 ? C6 LMT 2001 D 1 
HETATM 30 C C7 LMT . . . O 2 21.789 -39.173 37.774 0.6 47.27 ? C7 LMT 2001 D 1 
HETATM 31 C C8 LMT . . . O 2 22.46 -40.499 37.413 0.6 47.24 ? C8 LMT 2001 D 1 
HETATM 32 C C9 LMT . . . O 2 22.662 -41.432 38.609 0.6 48.58 ? C9 LMT 2001 D 1 
HETATM 33 C C10 LMT . . . O 2 22.051 -42.824 38.37 0.6 55.06 ? C10 LMT 2001 D 1 
HETATM 34 C C11 LMT . . . O 2 22.043 -43.783 39.579 0.6 55.58 ? C11 LMT 2001 D 1 
HETATM 35 C C12 LMT . . . O 2 20.766 -43.727 40.409 0.6 54.08 ? C12 LMT 2001 D 1 
#
_model_server_stats.io_time_ms              28 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    67 
_model_server_stats.query_time_ms           240 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           35 
#