data_3W9J
#
_model_server_result.job_id            ebuvE5FRGcoy8OchoE8IVA 
_model_server_result.datetime_utc      '2024-11-13 04:34:03' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3w9j 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"R","auth_seq_id":2001}' 
#
_entry.id    3W9J 
#
_exptl.entry_id    3W9J 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              693.776 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '[{2-[({[(3R)-1-{8-[(4-tert-butyl-1,3-thiazol-2-yl)carbamoyl]-4-oxo-3-[(E)-2-(1H-tetrazol-5-yl)ethenyl]-4H-pyrido[1,2-a]pyrimidin-2-yl}piperidin-3-yl]oxy}carbonyl)amino]ethyl}(dimethyl)ammonio]acetate' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         85.75 
_cell.angle_beta          68.93 
_cell.angle_gamma         87.39 
_cell.entry_id            3W9J 
_cell.length_a            126.204 
_cell.length_b            137.034 
_cell.length_c            152.275 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3W9J 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA trimeric 3 author_and_software_defined_assembly 1 
PISA trimeric 3 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,G,H,I,J,K,L,M,N 1 1 
D,E,F,O,P,Q,R,S,T,U,V,W 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 J N N 
? 3 R N N 
#
_chem_comp.formula           'C31 H39 N11 O6 S' 
_chem_comp.formula_weight    693.776 
_chem_comp.id                P9D 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '[{2-[({[(3R)-1-{8-[(4-tert-butyl-1,3-thiazol-2-yl)carbamoyl]-4-oxo-3-[(E)-2-(1H-tetrazol-5-yl)ethenyl]-4H-pyrido[1,2-a]pyrimidin-2-yl}piperidin-3-yl]oxy}carbonyl)amino]ethyl}(dimethyl)ammonio]acetate' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 P9D sing 317 n n 
C2 C3 P9D sing 318 n n 
C2 C4 P9D sing 319 n n 
C2 C5 P9D sing 320 n n 
C4 N6 P9D sing 321 n y 
C4 C9 P9D doub 322 n y 
N6 C7 P9D doub 323 n y 
C7 S8 P9D sing 324 n y 
C7 N10 P9D sing 325 n n 
S8 C9 P9D sing 326 n y 
N10 C11 P9D sing 327 n n 
C11 C12 P9D sing 328 n n 
C11 O13 P9D doub 329 n n 
C12 C14 P9D doub 330 n n 
C12 C18 P9D sing 331 n n 
C14 C15 P9D sing 332 n n 
C15 N16 P9D sing 333 n n 
C15 N19 P9D doub 334 n n 
N16 C17 P9D sing 335 n n 
N16 C20 P9D sing 336 n n 
C17 C18 P9D doub 337 n n 
N19 C21 P9D sing 338 n n 
C20 C22 P9D sing 339 n n 
C20 O23 P9D doub 340 n n 
C21 C22 P9D doub 341 n n 
C21 N24 P9D sing 342 n n 
C22 C25 P9D sing 343 n n 
N24 C32 P9D sing 344 n n 
N24 C37 P9D sing 345 n n 
C25 C26 P9D doub 346 e n 
C26 C27 P9D sing 347 n n 
C27 N28 P9D doub 348 n y 
C27 N31 P9D sing 349 n y 
N28 N29 P9D sing 350 n y 
N29 N30 P9D doub 351 n y 
N30 N31 P9D sing 352 n y 
C32 C33 P9D sing 353 n n 
C33 O34 P9D sing 354 n n 
C33 C35 P9D sing 355 n n 
O34 C38 P9D sing 356 n n 
C35 C36 P9D sing 357 n n 
C36 C37 P9D sing 358 n n 
C38 N39 P9D sing 359 n n 
C38 O44 P9D doub 360 n n 
N39 C40 P9D sing 361 n n 
C40 C41 P9D sing 362 n n 
C41 N42 P9D sing 363 n n 
N42 C43 P9D sing 364 n n 
N42 C48 P9D sing 365 n n 
N42 C49 P9D sing 366 n n 
C43 C45 P9D sing 367 n n 
C45 O46 P9D sing 368 n n 
C45 O47 P9D doub 369 n n 
C1 H1 P9D sing 370 n n 
C1 H1A P9D sing 371 n n 
C1 H1B P9D sing 372 n n 
C3 H3 P9D sing 373 n n 
C3 H3A P9D sing 374 n n 
C3 H3B P9D sing 375 n n 
C5 H5 P9D sing 376 n n 
C5 H5A P9D sing 377 n n 
C5 H5B P9D sing 378 n n 
C9 H9 P9D sing 379 n n 
N10 HN10 P9D sing 380 n n 
C14 H14 P9D sing 381 n n 
C17 H17 P9D sing 382 n n 
C18 H18 P9D sing 383 n n 
C25 H25 P9D sing 384 n n 
C26 H26 P9D sing 385 n n 
N31 HN31 P9D sing 386 n n 
C32 H32 P9D sing 387 n n 
C32 H32A P9D sing 388 n n 
C33 H33 P9D sing 389 n n 
C35 H35 P9D sing 390 n n 
C35 H35A P9D sing 391 n n 
C36 H36 P9D sing 392 n n 
C36 H36A P9D sing 393 n n 
C37 H37 P9D sing 394 n n 
C37 H37A P9D sing 395 n n 
N39 HN39 P9D sing 396 n n 
C40 H40 P9D sing 397 n n 
C40 H40A P9D sing 398 n n 
C41 H41 P9D sing 399 n n 
C41 H41A P9D sing 400 n n 
C43 H43 P9D sing 401 n n 
C43 H43A P9D sing 402 n n 
C48 H48 P9D sing 403 n n 
C48 H48A P9D sing 404 n n 
C48 H48B P9D sing 405 n n 
C49 H49 P9D sing 406 n n 
C49 H49A P9D sing 407 n n 
C49 H49B P9D sing 408 n n 
#
_atom_sites.entry_id                     3W9J 
_atom_sites.fract_transf_matrix[1][1]    0.007924 
_atom_sites.fract_transf_matrix[1][2]    -0.000361 
_atom_sites.fract_transf_matrix[1][3]    -0.003036 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007305 
_atom_sites.fract_transf_matrix[2][3]    -0.000454 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007051 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 2 LMT A 1 2001 2001 LMT LMT . 
H 2 LMT A 1 2002 2002 LMT LMT . 
I 2 LMT A 1 2003 2003 LMT LMT . 
J 3 P9D B 1 2001 2001 P9D P9D . 
K 2 LMT B 1 2002 2002 LMT LMT . 
L 2 LMT B 1 2003 2003 LMT LMT . 
M 2 LMT B 1 2004 2004 LMT LMT . 
N 2 LMT C 1 2001 2001 LMT LMT . 
O 2 LMT D 1 2001 2001 LMT LMT . 
P 2 LMT D 1 2002 2002 LMT LMT . 
Q 2 LMT D 1 2003 2003 LMT LMT . 
R 3 P9D E 1 2001 2001 P9D P9D . 
S 2 LMT E 1 2002 2002 LMT LMT . 
T 2 LMT E 1 2003 2003 LMT LMT . 
U 2 LMT E 1 2004 2004 LMT LMT . 
V 2 LMT F 1 2001 2001 LMT LMT . 
W 2 LMT F 1 2002 2002 LMT LMT . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 P9D . . . R 3 -32.555 -30.714 62.197 0.9 88.71 ? C1 P9D 2001 E 1 
HETATM 2 C C2 P9D . . . R 3 -33.338 -30.144 61.028 0.9 91.5 ? C2 P9D 2001 E 1 
HETATM 3 C C3 P9D . . . R 3 -32.389 -29.525 60 0.9 92.2 ? C3 P9D 2001 E 1 
HETATM 4 C C4 P9D . . . R 3 -34.338 -29.124 61.52 0.9 99.06 ? C4 P9D 2001 E 1 
HETATM 5 C C5 P9D . . . R 3 -34.1 -31.289 60.389 0.9 85.8 ? C5 P9D 2001 E 1 
HETATM 6 N N6 P9D . . . R 3 -34.832 -28.202 60.637 0.9 104.48 ? N6 P9D 2001 E 1 
HETATM 7 C C7 P9D . . . R 3 -35.697 -27.435 61.335 0.9 97.9 ? C7 P9D 2001 E 1 
HETATM 8 S S8 P9D . . . R 3 -35.847 -27.843 62.916 0.9 92.42 ? S8 P9D 2001 E 1 
HETATM 9 C C9 P9D . . . R 3 -34.784 -29.101 62.859 0.9 95.83 ? C9 P9D 2001 E 1 
HETATM 10 N N10 P9D . . . R 3 -36.355 -26.435 60.717 0.9 89.67 ? N10 P9D 2001 E 1 
HETATM 11 C C11 P9D . . . R 3 -37.272 -25.647 61.273 0.9 78.19 ? C11 P9D 2001 E 1 
HETATM 12 C C12 P9D . . . R 3 -37.821 -24.581 60.374 0.9 71.69 ? C12 P9D 2001 E 1 
HETATM 13 O O13 P9D . . . R 3 -37.597 -25.715 62.447 0.9 76.05 ? O13 P9D 2001 E 1 
HETATM 14 C C14 P9D . . . R 3 -37.609 -24.681 58.996 0.9 66.97 ? C14 P9D 2001 E 1 
HETATM 15 C C15 P9D . . . R 3 -38.065 -23.699 58.13 0.9 66.55 ? C15 P9D 2001 E 1 
HETATM 16 N N16 P9D . . . R 3 -38.765 -22.562 58.674 0.9 65.2 ? N16 P9D 2001 E 1 
HETATM 17 C C17 P9D . . . R 3 -38.963 -22.474 60.109 0.9 69.72 ? C17 P9D 2001 E 1 
HETATM 18 C C18 P9D . . . R 3 -38.472 -23.486 60.929 0.9 70.67 ? C18 P9D 2001 E 1 
HETATM 19 N N19 P9D . . . R 3 -37.861 -23.821 56.801 0.9 73.35 ? N19 P9D 2001 E 1 
HETATM 20 C C20 P9D . . . R 3 -39.25 -21.534 57.786 0.9 62.42 ? C20 P9D 2001 E 1 
HETATM 21 C C21 P9D . . . R 3 -38.286 -22.914 55.879 0.9 73.26 ? C21 P9D 2001 E 1 
HETATM 22 C C22 P9D . . . R 3 -38.999 -21.693 56.341 0.9 64.51 ? C22 P9D 2001 E 1 
HETATM 23 O O23 P9D . . . R 3 -39.861 -20.537 58.23 0.9 60.41 ? O23 P9D 2001 E 1 
HETATM 24 N N24 P9D . . . R 3 -38.001 -23.16 54.514 0.9 79.82 ? N24 P9D 2001 E 1 
HETATM 25 C C25 P9D . . . R 3 -39.485 -20.664 55.402 0.9 69 ? C25 P9D 2001 E 1 
HETATM 26 C C26 P9D . . . R 3 -38.747 -19.589 55.147 0.9 75.09 ? C26 P9D 2001 E 1 
HETATM 27 C C27 P9D . . . R 3 -39.245 -18.547 54.215 0.9 75.58 ? C27 P9D 2001 E 1 
HETATM 28 N N28 P9D . . . R 3 -40.407 -17.92 54.407 0.9 73.5 ? N28 P9D 2001 E 1 
HETATM 29 N N29 P9D . . . R 3 -40.509 -17.021 53.34 0.9 71.87 ? N29 P9D 2001 E 1 
HETATM 30 N N30 P9D . . . R 3 -39.352 -17.163 52.556 0.9 78.99 ? N30 P9D 2001 E 1 
HETATM 31 N N31 P9D . . . R 3 -38.546 -18.161 53.144 0.9 78.97 ? N31 P9D 2001 E 1 
HETATM 32 C C32 P9D . . . R 3 -36.564 -22.961 54.371 0.9 86.61 ? C32 P9D 2001 E 1 
HETATM 33 C C33 P9D . . . R 3 -36.102 -23.465 53.002 0.9 92.99 ? C33 P9D 2001 E 1 
HETATM 34 O O34 P9D . . . R 3 -34.951 -22.687 52.624 0.9 96.17 ? O34 P9D 2001 E 1 
HETATM 35 C C35 P9D . . . R 3 -37.212 -23.454 51.935 0.9 83.03 ? C35 P9D 2001 E 1 
HETATM 36 C C36 P9D . . . R 3 -38.248 -22.362 52.165 0.9 77.13 ? C36 P9D 2001 E 1 
HETATM 37 C C37 P9D . . . R 3 -38.831 -22.37 53.582 0.9 76.96 ? C37 P9D 2001 E 1 
HETATM 38 C C38 P9D . . . R 3 -35.156 -21.246 52.476 0.9 94.07 ? C38 P9D 2001 E 1 
HETATM 39 N N39 P9D . . . R 3 -35.014 -20.808 51.228 0.9 102.67 ? N39 P9D 2001 E 1 
HETATM 40 C C40 P9D . . . R 3 -33.721 -20.866 50.563 0.9 108.64 ? C40 P9D 2001 E 1 
HETATM 41 C C41 P9D . . . R 3 -32.603 -20.175 51.362 0.9 112.15 ? C41 P9D 2001 E 1 
HETATM 42 N N42 P9D . . . R 3 -32.766 -18.705 51.531 0.9 113.45 ? N42 P9D 2001 E 1 
HETATM 43 C C43 P9D . . . R 3 -33.768 -18.143 50.589 0.9 100.75 ? C43 P9D 2001 E 1 
HETATM 44 O O44 P9D . . . R 3 -35.416 -20.52 53.441 0.9 75.91 ? O44 P9D 2001 E 1 
HETATM 45 C C45 P9D . . . R 3 -34.825 -17.252 51.2 0.9 84.58 ? C45 P9D 2001 E 1 
HETATM 46 O O46 P9D . . . R 3 -34.537 -16.072 51.473 0.9 76.16 ? O46 P9D 2001 E 1 
HETATM 47 O O47 P9D . . . R 3 -35.956 -17.732 51.391 0.9 83.03 ? O47 P9D 2001 E 1 
HETATM 48 C C48 P9D . . . R 3 -33.059 -18.373 52.94 0.9 104.28 ? C48 P9D 2001 E 1 
HETATM 49 C C49 P9D . . . R 3 -31.463 -18.105 51.199 0.9 123.18 ? C49 P9D 2001 E 1 
#
_model_server_stats.io_time_ms              22 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    74 
_model_server_stats.query_time_ms           278 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           49 
#