data_3W9J # _model_server_result.job_id xxzqid_aA3JAniLKQJwndg _model_server_result.datetime_utc '2024-11-24 01:08:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3w9j # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":2003}' # _entry.id 3W9J # _exptl.entry_id 3W9J _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 510.615 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description DODECYL-BETA-D-MALTOSIDE _entity.pdbx_number_of_molecules 15 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 85.75 _cell.angle_beta 68.93 _cell.angle_gamma 87.39 _cell.entry_id 3W9J _cell.length_a 126.204 _cell.length_b 137.034 _cell.length_c 152.275 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3W9J _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA trimeric 3 author_and_software_defined_assembly 1 PISA trimeric 3 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,G,H,I,J,K,L,M,N 1 1 D,E,F,O,P,Q,R,S,T,U,V,W 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 G N N ? 2 H N N ? 2 I N N ? 2 K N N ? 2 L N N ? 2 M N N ? 2 N N N ? 2 O N N ? 2 P N N ? 2 Q N N ? 2 S N N ? 2 T N N ? 2 U N N ? 2 V N N ? 2 W N N # _chem_comp.formula 'C24 H46 O11' _chem_comp.formula_weight 510.615 _chem_comp.id LMT _chem_comp.mon_nstd_flag . _chem_comp.name DODECYL-BETA-D-MALTOSIDE _chem_comp.type d-saccharide _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1B C2B LMT sing 192 n n C1B O1B LMT sing 193 n n C1B O5B LMT sing 194 n n C1B H1B LMT sing 195 n n C2B C3B LMT sing 196 n n C2B O2B LMT sing 197 n n C2B H2B LMT sing 198 n n C3B C4B LMT sing 199 n n C3B O3B LMT sing 200 n n C3B H3B LMT sing 201 n n C4B C5B LMT sing 202 n n C4B O4' LMT sing 203 n n C4B H4B LMT sing 204 n n C5B C6B LMT sing 205 n n C5B O5B LMT sing 206 n n C5B H5B LMT sing 207 n n C6B O6B LMT sing 208 n n C6B "H6'2" LMT sing 209 n n C6B "H6'1" LMT sing 210 n n O1B C4' LMT sing 211 n n O2B H2O1 LMT sing 212 n n O3B H3O1 LMT sing 213 n n O4' H4O1 LMT sing 214 n n O6B H6B LMT sing 215 n n C1' C2' LMT sing 216 n n C1' O1' LMT sing 217 n n C1' O5' LMT sing 218 n n C1' H1' LMT sing 219 n n C2' C3' LMT sing 220 n n C2' O2' LMT sing 221 n n C2' H2' LMT sing 222 n n C3' C4' LMT sing 223 n n C3' O3' LMT sing 224 n n C3' H3' LMT sing 225 n n C4' C5' LMT sing 226 n n C4' H4' LMT sing 227 n n C5' C6' LMT sing 228 n n C5' O5' LMT sing 229 n n C5' H5' LMT sing 230 n n C6' O6' LMT sing 231 n n C6' H6D LMT sing 232 n n C6' H6E LMT sing 233 n n O1' C1 LMT sing 234 n n O2' H2O2 LMT sing 235 n n O3' H3O2 LMT sing 236 n n O6' H6' LMT sing 237 n n C1 C2 LMT sing 238 n n C1 H12 LMT sing 239 n n C1 H11 LMT sing 240 n n C2 C3 LMT sing 241 n n C2 H22 LMT sing 242 n n C2 H21 LMT sing 243 n n C3 C4 LMT sing 244 n n C3 H32 LMT sing 245 n n C3 H31 LMT sing 246 n n C4 C5 LMT sing 247 n n C4 H42 LMT sing 248 n n C4 H41 LMT sing 249 n n C5 C6 LMT sing 250 n n C5 H52 LMT sing 251 n n C5 H51 LMT sing 252 n n C6 C7 LMT sing 253 n n C6 H62 LMT sing 254 n n C6 H61 LMT sing 255 n n C7 C8 LMT sing 256 n n C7 H72 LMT sing 257 n n C7 H71 LMT sing 258 n n C8 C9 LMT sing 259 n n C8 H82 LMT sing 260 n n C8 H81 LMT sing 261 n n C9 C10 LMT sing 262 n n C9 H92 LMT sing 263 n n C9 H91 LMT sing 264 n n C10 C11 LMT sing 265 n n C10 H102 LMT sing 266 n n C10 H101 LMT sing 267 n n C11 C12 LMT sing 268 n n C11 H112 LMT sing 269 n n C11 H111 LMT sing 270 n n C12 H123 LMT sing 271 n n C12 H122 LMT sing 272 n n C12 H121 LMT sing 273 n n # _atom_sites.entry_id 3W9J _atom_sites.fract_transf_matrix[1][1] 0.007924 _atom_sites.fract_transf_matrix[1][2] -0.000361 _atom_sites.fract_transf_matrix[1][3] -0.003036 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007305 _atom_sites.fract_transf_matrix[2][3] -0.000454 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007051 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 2 LMT A 1 2001 2001 LMT LMT . H 2 LMT A 1 2002 2002 LMT LMT . I 2 LMT A 1 2003 2003 LMT LMT . J 3 P9D B 1 2001 2001 P9D P9D . K 2 LMT B 1 2002 2002 LMT LMT . L 2 LMT B 1 2003 2003 LMT LMT . M 2 LMT B 1 2004 2004 LMT LMT . N 2 LMT C 1 2001 2001 LMT LMT . O 2 LMT D 1 2001 2001 LMT LMT . P 2 LMT D 1 2002 2002 LMT LMT . Q 2 LMT D 1 2003 2003 LMT LMT . R 3 P9D E 1 2001 2001 P9D P9D . S 2 LMT E 1 2002 2002 LMT LMT . T 2 LMT E 1 2003 2003 LMT LMT . U 2 LMT E 1 2004 2004 LMT LMT . V 2 LMT F 1 2001 2001 LMT LMT . W 2 LMT F 1 2002 2002 LMT LMT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1B LMT . . . L 2 -0.295 18.348 -58.144 1 92.57 ? C1B LMT 2003 B 1 HETATM 2 C C2B LMT . . . L 2 0.245 16.924 -58.381 1 94.76 ? C2B LMT 2003 B 1 HETATM 3 C C3B LMT . . . L 2 -0.404 16.335 -59.629 1 100.34 ? C3B LMT 2003 B 1 HETATM 4 C C4B LMT . . . L 2 -1.857 16.038 -59.259 1 103.44 ? C4B LMT 2003 B 1 HETATM 5 C C5B LMT . . . L 2 -2.582 17.307 -58.769 1 106.69 ? C5B LMT 2003 B 1 HETATM 6 C C6B LMT . . . L 2 -3.587 16.949 -57.663 1 111.44 ? C6B LMT 2003 B 1 HETATM 7 O O1B LMT . . . L 2 0.307 19.369 -58.98 1 82.87 ? O1B LMT 2003 B 1 HETATM 8 O O2B LMT . . . L 2 1.673 16.839 -58.465 1 82.58 ? O2B LMT 2003 B 1 HETATM 9 O O3B LMT . . . L 2 0.299 15.16 -60.048 1 102.31 ? O3B LMT 2003 B 1 HETATM 10 O O4' LMT . . . L 2 -2.573 15.443 -60.351 1 97.08 ? O4' LMT 2003 B 1 HETATM 11 O O5B LMT . . . L 2 -1.741 18.402 -58.282 1 104.9 ? O5B LMT 2003 B 1 HETATM 12 O O6B LMT . . . L 2 -4.948 16.993 -58.118 1 100.49 ? O6B LMT 2003 B 1 HETATM 13 C C1' LMT . . . L 2 0.236 23.639 -58.367 1 74.85 ? C1' LMT 2003 B 1 HETATM 14 C C2' LMT . . . L 2 1.254 22.814 -57.566 1 76.05 ? C2' LMT 2003 B 1 HETATM 15 C C3' LMT . . . L 2 1.501 21.443 -58.236 1 81.26 ? C3' LMT 2003 B 1 HETATM 16 C C4' LMT . . . L 2 0.174 20.69 -58.418 1 82.37 ? C4' LMT 2003 B 1 HETATM 17 C C5' LMT . . . L 2 -0.722 21.631 -59.235 1 82.79 ? C5' LMT 2003 B 1 HETATM 18 C C6' LMT . . . L 2 -2.042 21.021 -59.714 1 79.47 ? C6' LMT 2003 B 1 HETATM 19 O O1' LMT . . . L 2 -0.009 24.943 -57.785 1 82.03 ? O1' LMT 2003 B 1 HETATM 20 O O2' LMT . . . L 2 2.479 23.553 -57.402 1 75.88 ? O2' LMT 2003 B 1 HETATM 21 O O3' LMT . . . L 2 2.445 20.665 -57.481 1 88.98 ? O3' LMT 2003 B 1 HETATM 22 O O5' LMT . . . L 2 -0.945 22.835 -58.467 1 75.38 ? O5' LMT 2003 B 1 HETATM 23 O O6' LMT . . . L 2 -2.986 20.962 -58.646 1 82.34 ? O6' LMT 2003 B 1 HETATM 24 C C1 LMT . . . L 2 -0.839 25.861 -58.531 1 75.66 ? C1 LMT 2003 B 1 HETATM 25 C C2 LMT . . . L 2 -0.321 27.305 -58.527 1 76.11 ? C2 LMT 2003 B 1 HETATM 26 C C3 LMT . . . L 2 -1.349 28.32 -59.078 1 83.02 ? C3 LMT 2003 B 1 HETATM 27 C C4 LMT . . . L 2 -0.746 29.674 -59.524 1 82.16 ? C4 LMT 2003 B 1 HETATM 28 C C5 LMT . . . L 2 -1.773 30.783 -59.815 1 82.16 ? C5 LMT 2003 B 1 HETATM 29 C C6 LMT . . . L 2 -1.198 32.192 -59.576 1 87.84 ? C6 LMT 2003 B 1 HETATM 30 C C7 LMT . . . L 2 -1.796 33.327 -60.446 1 99.2 ? C7 LMT 2003 B 1 HETATM 31 C C8 LMT . . . L 2 -0.981 34.642 -60.389 1 92.26 ? C8 LMT 2003 B 1 HETATM 32 C C9 LMT . . . L 2 -1.46 35.797 -61.282 1 80.91 ? C9 LMT 2003 B 1 HETATM 33 C C10 LMT . . . L 2 -1.997 36.994 -60.484 1 84.84 ? C10 LMT 2003 B 1 HETATM 34 C C11 LMT . . . L 2 -1.818 38.368 -61.158 1 85.33 ? C11 LMT 2003 B 1 HETATM 35 C C12 LMT . . . L 2 -2.213 39.554 -60.273 1 71.71 ? C12 LMT 2003 B 1 # _model_server_stats.io_time_ms 25 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 77 _model_server_stats.query_time_ms 344 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 35 #