data_3W9Z # _model_server_result.job_id 7e1pPESQIu82u02hQXYk3A _model_server_result.datetime_utc '2024-12-26 23:06:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3w9z # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 3W9Z # _exptl.entry_id 3W9Z _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 456.344 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN MONONUCLEOTIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3W9Z _cell.length_a 93.252 _cell.length_b 93.252 _cell.length_c 115.499 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3W9Z _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C17 H21 N4 O9 P' _chem_comp.formula_weight 456.344 _chem_comp.id FMN _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN MONONUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'RIBOFLAVIN MONOPHOSPHATE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 FMN sing 83 n n N1 C10 FMN doub 84 n n C2 O2 FMN doub 85 n n C2 N3 FMN sing 86 n n N3 C4 FMN sing 87 n n N3 HN3 FMN sing 88 n n C4 O4 FMN doub 89 n n C4 C4A FMN sing 90 n n C4A N5 FMN doub 91 n n C4A C10 FMN sing 92 n n N5 C5A FMN sing 93 n n C5A C6 FMN doub 94 n y C5A C9A FMN sing 95 n y C6 C7 FMN sing 96 n y C6 H6 FMN sing 97 n n C7 C7M FMN sing 98 n n C7 C8 FMN doub 99 n y C7M HM71 FMN sing 100 n n C7M HM72 FMN sing 101 n n C7M HM73 FMN sing 102 n n C8 C8M FMN sing 103 n n C8 C9 FMN sing 104 n y C8M HM81 FMN sing 105 n n C8M HM82 FMN sing 106 n n C8M HM83 FMN sing 107 n n C9 C9A FMN doub 108 n y C9 H9 FMN sing 109 n n C9A N10 FMN sing 110 n n N10 C10 FMN sing 111 n n N10 C1' FMN sing 112 n n C1' C2' FMN sing 113 n n C1' "H1'1" FMN sing 114 n n C1' "H1'2" FMN sing 115 n n C2' O2' FMN sing 116 n n C2' C3' FMN sing 117 n n C2' H2' FMN sing 118 n n O2' HO2' FMN sing 119 n n C3' O3' FMN sing 120 n n C3' C4' FMN sing 121 n n C3' H3' FMN sing 122 n n O3' HO3' FMN sing 123 n n C4' O4' FMN sing 124 n n C4' C5' FMN sing 125 n n C4' H4' FMN sing 126 n n O4' HO4' FMN sing 127 n n C5' O5' FMN sing 128 n n C5' "H5'1" FMN sing 129 n n C5' "H5'2" FMN sing 130 n n O5' P FMN sing 131 n n P O1P FMN doub 132 n n P O2P FMN sing 133 n n P O3P FMN sing 134 n n O2P HOP2 FMN sing 135 n n O3P HOP3 FMN sing 136 n n # _atom_sites.entry_id 3W9Z _atom_sites.fract_transf_matrix[1][1] 0.010724 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010724 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008658 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FMN A 1 401 1 FMN FMN . C 3 HOH A 1 501 3 HOH HOH . C 3 HOH A 2 502 4 HOH HOH . C 3 HOH A 3 503 5 HOH HOH . C 3 HOH A 4 504 6 HOH HOH . C 3 HOH A 5 505 7 HOH HOH . C 3 HOH A 6 506 8 HOH HOH . C 3 HOH A 7 507 9 HOH HOH . C 3 HOH A 8 508 11 HOH HOH . C 3 HOH A 9 509 12 HOH HOH . C 3 HOH A 10 510 13 HOH HOH . C 3 HOH A 11 511 14 HOH HOH . C 3 HOH A 12 512 15 HOH HOH . C 3 HOH A 13 513 16 HOH HOH . C 3 HOH A 14 514 17 HOH HOH . C 3 HOH A 15 515 18 HOH HOH . C 3 HOH A 16 516 19 HOH HOH . C 3 HOH A 17 517 20 HOH HOH . C 3 HOH A 18 518 21 HOH HOH . C 3 HOH A 19 519 22 HOH HOH . C 3 HOH A 20 520 23 HOH HOH . C 3 HOH A 21 521 24 HOH HOH . C 3 HOH A 22 522 25 HOH HOH . C 3 HOH A 23 523 27 HOH HOH . C 3 HOH A 24 524 28 HOH HOH . C 3 HOH A 25 525 29 HOH HOH . C 3 HOH A 26 526 30 HOH HOH . C 3 HOH A 27 527 31 HOH HOH . C 3 HOH A 28 528 32 HOH HOH . C 3 HOH A 29 529 33 HOH HOH . C 3 HOH A 30 530 34 HOH HOH . C 3 HOH A 31 531 35 HOH HOH . C 3 HOH A 32 532 36 HOH HOH . C 3 HOH A 33 533 37 HOH HOH . C 3 HOH A 34 534 38 HOH HOH . C 3 HOH A 35 535 39 HOH HOH . C 3 HOH A 36 536 40 HOH HOH . C 3 HOH A 37 537 41 HOH HOH . C 3 HOH A 38 538 42 HOH HOH . C 3 HOH A 39 539 43 HOH HOH . C 3 HOH A 40 540 44 HOH HOH . C 3 HOH A 41 541 45 HOH HOH . C 3 HOH A 42 542 46 HOH HOH . C 3 HOH A 43 543 48 HOH HOH . C 3 HOH A 44 544 49 HOH HOH . C 3 HOH A 45 545 50 HOH HOH . C 3 HOH A 46 546 52 HOH HOH . C 3 HOH A 47 547 54 HOH HOH . C 3 HOH A 48 548 55 HOH HOH . C 3 HOH A 49 549 56 HOH HOH . C 3 HOH A 50 550 57 HOH HOH . C 3 HOH A 51 551 58 HOH HOH . C 3 HOH A 52 552 59 HOH HOH . C 3 HOH A 53 553 60 HOH HOH . C 3 HOH A 54 554 61 HOH HOH . C 3 HOH A 55 555 62 HOH HOH . C 3 HOH A 56 556 63 HOH HOH . C 3 HOH A 57 557 65 HOH HOH . C 3 HOH A 58 558 66 HOH HOH . C 3 HOH A 59 559 67 HOH HOH . C 3 HOH A 60 560 68 HOH HOH . C 3 HOH A 61 561 69 HOH HOH . C 3 HOH A 62 562 70 HOH HOH . C 3 HOH A 63 563 71 HOH HOH . C 3 HOH A 64 564 72 HOH HOH . C 3 HOH A 65 565 74 HOH HOH . C 3 HOH A 66 566 75 HOH HOH . C 3 HOH A 67 567 76 HOH HOH . C 3 HOH A 68 568 77 HOH HOH . C 3 HOH A 69 569 78 HOH HOH . C 3 HOH A 70 570 79 HOH HOH . C 3 HOH A 71 571 80 HOH HOH . C 3 HOH A 72 572 81 HOH HOH . C 3 HOH A 73 573 82 HOH HOH . C 3 HOH A 74 574 83 HOH HOH . C 3 HOH A 75 575 84 HOH HOH . C 3 HOH A 76 576 85 HOH HOH . C 3 HOH A 77 577 86 HOH HOH . C 3 HOH A 78 578 87 HOH HOH . C 3 HOH A 79 579 88 HOH HOH . C 3 HOH A 80 580 91 HOH HOH . C 3 HOH A 81 581 92 HOH HOH . C 3 HOH A 82 582 95 HOH HOH . C 3 HOH A 83 583 98 HOH HOH . C 3 HOH A 84 584 99 HOH HOH . C 3 HOH A 85 585 100 HOH HOH . C 3 HOH A 86 586 101 HOH HOH . C 3 HOH A 87 587 102 HOH HOH . C 3 HOH A 88 588 103 HOH HOH . C 3 HOH A 89 589 104 HOH HOH . C 3 HOH A 90 590 105 HOH HOH . C 3 HOH A 91 591 106 HOH HOH . C 3 HOH A 92 592 108 HOH HOH . C 3 HOH A 93 593 109 HOH HOH . C 3 HOH A 94 594 110 HOH HOH . C 3 HOH A 95 595 111 HOH HOH . C 3 HOH A 96 596 113 HOH HOH . C 3 HOH A 97 597 115 HOH HOH . C 3 HOH A 98 598 116 HOH HOH . C 3 HOH A 99 599 117 HOH HOH . C 3 HOH A 100 600 118 HOH HOH . C 3 HOH A 101 601 119 HOH HOH . C 3 HOH A 102 602 121 HOH HOH . C 3 HOH A 103 603 122 HOH HOH . C 3 HOH A 104 604 124 HOH HOH . C 3 HOH A 105 605 125 HOH HOH . C 3 HOH A 106 606 127 HOH HOH . C 3 HOH A 107 607 128 HOH HOH . C 3 HOH A 108 608 134 HOH HOH . C 3 HOH A 109 609 135 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 FMN . . . B 2 12.212 36.986 11.309 1 46.47 ? N1 FMN 401 A 1 HETATM 2 C C2 FMN . . . B 2 12.236 35.661 11.697 1 44.66 ? C2 FMN 401 A 1 HETATM 3 O O2 FMN . . . B 2 13.289 35.027 11.629 1 51.59 ? O2 FMN 401 A 1 HETATM 4 N N3 FMN . . . B 2 11.089 35.043 12.152 1 40.4 ? N3 FMN 401 A 1 HETATM 5 C C4 FMN . . . B 2 9.905 35.749 12.229 1 45.05 ? C4 FMN 401 A 1 HETATM 6 O O4 FMN . . . B 2 8.887 35.186 12.635 1 43.3 ? O4 FMN 401 A 1 HETATM 7 C C4A FMN . . . B 2 9.88 37.091 11.84 1 44.6 ? C4A FMN 401 A 1 HETATM 8 N N5 FMN . . . B 2 8.715 37.824 11.914 1 48.26 ? N5 FMN 401 A 1 HETATM 9 C C5A FMN . . . B 2 8.699 39.149 11.509 1 47.83 ? C5A FMN 401 A 1 HETATM 10 C C6 FMN . . . B 2 7.504 39.859 11.582 1 53.53 ? C6 FMN 401 A 1 HETATM 11 C C7 FMN . . . B 2 7.44 41.194 11.191 1 51.05 ? C7 FMN 401 A 1 HETATM 12 C C7M FMN . . . B 2 6.128 41.933 11.294 1 51.73 ? C7M FMN 401 A 1 HETATM 13 C C8 FMN . . . B 2 8.581 41.821 10.715 1 56.76 ? C8 FMN 401 A 1 HETATM 14 C C8M FMN . . . B 2 8.514 43.27 10.292 1 50.87 ? C8M FMN 401 A 1 HETATM 15 C C9 FMN . . . B 2 9.786 41.101 10.629 1 44.74 ? C9 FMN 401 A 1 HETATM 16 C C9A FMN . . . B 2 9.854 39.762 11.026 1 48.57 ? C9A FMN 401 A 1 HETATM 17 N N10 FMN . . . B 2 11.041 39.029 10.97 1 50.7 ? N10 FMN 401 A 1 HETATM 18 C C10 FMN . . . B 2 11.041 37.703 11.367 1 42.93 ? C10 FMN 401 A 1 HETATM 19 C C1' FMN . . . B 2 12.311 39.622 10.415 1 43.57 ? C1' FMN 401 A 1 HETATM 20 C C2' FMN . . . B 2 12.116 39.495 8.874 1 48.17 ? C2' FMN 401 A 1 HETATM 21 O O2' FMN . . . B 2 11.931 38.15 8.449 1 45.81 ? O2' FMN 401 A 1 HETATM 22 C C3' FMN . . . B 2 13.189 40.128 7.989 1 49.22 ? C3' FMN 401 A 1 HETATM 23 O O3' FMN . . . B 2 14.487 39.678 8.335 1 40.49 ? O3' FMN 401 A 1 HETATM 24 C C4' FMN . . . B 2 13.09 41.657 8.07 1 52.73 ? C4' FMN 401 A 1 HETATM 25 O O4' FMN . . . B 2 11.766 42.065 7.795 1 42.64 ? O4' FMN 401 A 1 HETATM 26 C C5' FMN . . . B 2 14.032 42.338 7.083 1 49.51 ? C5' FMN 401 A 1 HETATM 27 O O5' FMN . . . B 2 13.681 41.985 5.76 1 51.3 ? O5' FMN 401 A 1 HETATM 28 P P FMN . . . B 2 12.854 43.006 4.803 1 49.33 ? P FMN 401 A 1 HETATM 29 O O1P FMN . . . B 2 13.58 44.319 4.773 1 43.57 ? O1P FMN 401 A 1 HETATM 30 O O2P FMN . . . B 2 11.442 43.142 5.34 1 47.81 ? O2P FMN 401 A 1 HETATM 31 O O3P FMN . . . B 2 12.794 42.419 3.404 1 47.55 ? O3P FMN 401 A 1 # _model_server_stats.io_time_ms 113 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 334 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 31 #