data_3WAB # _model_server_result.job_id ADj0ngkfiOePYWTNT5obog _model_server_result.datetime_utc '2024-11-02 20:23:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3wab # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":404}' # _entry.id 3WAB # _exptl.entry_id 3WAB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3WAB _cell.length_a 79.314 _cell.length_b 79.314 _cell.length_c 100.342 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3WAB _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 63 A CYS 66 1_555 A SG CYS 76 A CYS 79 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf2 A SG CYS 135 A CYS 138 1_555 A SG CYS 158 A CYS 161 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf3 A SG CYS 149 A CYS 152 1_555 A SG CYS 163 A CYS 166 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? metalc ? metalc1 A ND1 HIS 66 A HIS 69 1_555 C ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.173 ? metalc ? metalc2 A OE2 GLU 69 A GLU 72 1_555 C ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.226 ? metalc ? metalc3 A OE1 GLU 69 A GLU 72 1_555 C ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.436 ? metalc ? metalc4 A OE2 GLU 82 A GLU 85 1_555 B ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.264 ? metalc ? metalc5 A ND1 HIS 194 A HIS 196 1_555 C ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.193 ? metalc ? metalc6 A O SER 195 A SER 197 1_555 E ZN ZN . A ZN 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.466 ? metalc ? metalc7 A OE1 GLU 268 A GLU 270 1_555 E ZN ZN . A ZN 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.279 ? metalc ? metalc8 A OE2 GLU 268 A GLU 270 1_555 E ZN ZN . A ZN 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.53 ? metalc ? metalc9 A OE1 GLU 289 A GLU 291 1_555 B ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.336 ? metalc ? metalc10 A OE2 GLU 289 A GLU 291 1_555 B ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.413 ? metalc ? metalc11 C ZN ZN . A ZN 402 1_555 D S9 DDW . A DDW 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.487 ? metalc ? metalc12 D S9 DDW . A DDW 403 1_555 E ZN ZN . A ZN 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.47 ? metalc ? metalc13 E ZN ZN . A ZN 404 1_555 F O1 CAC . A CAC 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.187 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3WAB _atom_sites.fract_transf_matrix[1][1] 0.012608 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012608 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009966 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 401 1 ZN ZN . C 2 ZN A 1 402 1 ZN ZN . D 3 DDW A 1 403 1 DDW DD2 . E 2 ZN A 1 404 1 ZN ZN . F 4 CAC A 1 405 1 CAC CAC . G 5 HOH A 1 501 6 HOH HOH . G 5 HOH A 2 502 19 HOH HOH . G 5 HOH A 3 503 21 HOH HOH . G 5 HOH A 4 504 24 HOH HOH . G 5 HOH A 5 505 26 HOH HOH . G 5 HOH A 6 506 31 HOH HOH . G 5 HOH A 7 507 38 HOH HOH . G 5 HOH A 8 508 40 HOH HOH . G 5 HOH A 9 509 41 HOH HOH . G 5 HOH A 10 510 58 HOH HOH . G 5 HOH A 11 511 59 HOH HOH . G 5 HOH A 12 512 60 HOH HOH . G 5 HOH A 13 513 61 HOH HOH . G 5 HOH A 14 514 62 HOH HOH . G 5 HOH A 15 515 64 HOH HOH . G 5 HOH A 16 516 65 HOH HOH . G 5 HOH A 17 517 66 HOH HOH . G 5 HOH A 18 518 67 HOH HOH . G 5 HOH A 19 519 68 HOH HOH . G 5 HOH A 20 520 69 HOH HOH . G 5 HOH A 21 521 70 HOH HOH . G 5 HOH A 22 522 71 HOH HOH . G 5 HOH A 23 523 72 HOH HOH . G 5 HOH A 24 524 73 HOH HOH . G 5 HOH A 25 525 74 HOH HOH . G 5 HOH A 26 526 75 HOH HOH . G 5 HOH A 27 527 76 HOH HOH . G 5 HOH A 28 528 77 HOH HOH . G 5 HOH A 29 529 78 HOH HOH . G 5 HOH A 30 530 79 HOH HOH . G 5 HOH A 31 531 80 HOH HOH . G 5 HOH A 32 532 81 HOH HOH . G 5 HOH A 33 533 82 HOH HOH . G 5 HOH A 34 534 83 HOH HOH . G 5 HOH A 35 535 84 HOH HOH . G 5 HOH A 36 536 85 HOH HOH . G 5 HOH A 37 537 86 HOH HOH . G 5 HOH A 38 538 87 HOH HOH . G 5 HOH A 39 539 88 HOH HOH . G 5 HOH A 40 540 89 HOH HOH . G 5 HOH A 41 541 90 HOH HOH . G 5 HOH A 42 542 91 HOH HOH . G 5 HOH A 43 543 92 HOH HOH . G 5 HOH A 44 544 93 HOH HOH . G 5 HOH A 45 545 94 HOH HOH . G 5 HOH A 46 546 95 HOH HOH . G 5 HOH A 47 547 96 HOH HOH . G 5 HOH A 48 548 97 HOH HOH . G 5 HOH A 49 549 98 HOH HOH . G 5 HOH A 50 550 99 HOH HOH . G 5 HOH A 51 551 100 HOH HOH . G 5 HOH A 52 552 101 HOH HOH . G 5 HOH A 53 553 102 HOH HOH . G 5 HOH A 54 554 103 HOH HOH . G 5 HOH A 55 555 104 HOH HOH . G 5 HOH A 56 556 105 HOH HOH . G 5 HOH A 57 557 106 HOH HOH . G 5 HOH A 58 558 107 HOH HOH . G 5 HOH A 59 559 108 HOH HOH . G 5 HOH A 60 560 4 HOH HOH . G 5 HOH A 61 561 6 HOH HOH . G 5 HOH A 62 562 7 HOH HOH . G 5 HOH A 63 563 10 HOH HOH . G 5 HOH A 64 564 11 HOH HOH . G 5 HOH A 65 565 13 HOH HOH . G 5 HOH A 66 566 17 HOH HOH . G 5 HOH A 67 567 20 HOH HOH . G 5 HOH A 68 568 21 HOH HOH . G 5 HOH A 69 569 22 HOH HOH . G 5 HOH A 70 570 25 HOH HOH . G 5 HOH A 71 571 28 HOH HOH . G 5 HOH A 72 572 31 HOH HOH . G 5 HOH A 73 573 33 HOH HOH . G 5 HOH A 74 574 39 HOH HOH . G 5 HOH A 75 575 40 HOH HOH . G 5 HOH A 76 576 42 HOH HOH . G 5 HOH A 77 577 46 HOH HOH . G 5 HOH A 78 578 48 HOH HOH . G 5 HOH A 79 579 49 HOH HOH . G 5 HOH A 80 580 51 HOH HOH . G 5 HOH A 81 581 57 HOH HOH . G 5 HOH A 82 582 59 HOH HOH . G 5 HOH A 83 583 60 HOH HOH . G 5 HOH A 84 584 64 HOH HOH . G 5 HOH A 85 585 66 HOH HOH . G 5 HOH A 86 586 67 HOH HOH . G 5 HOH A 87 587 68 HOH HOH . G 5 HOH A 88 588 75 HOH HOH . G 5 HOH A 89 589 78 HOH HOH . G 5 HOH A 90 590 81 HOH HOH . G 5 HOH A 91 591 82 HOH HOH . G 5 HOH A 92 592 86 HOH HOH . G 5 HOH A 93 593 88 HOH HOH . G 5 HOH A 94 594 89 HOH HOH . G 5 HOH A 95 595 90 HOH HOH . G 5 HOH A 96 596 91 HOH HOH . G 5 HOH A 97 597 92 HOH HOH . G 5 HOH A 98 598 93 HOH HOH . G 5 HOH A 99 599 94 HOH HOH . G 5 HOH A 100 600 98 HOH HOH . G 5 HOH A 101 601 100 HOH HOH . G 5 HOH A 102 602 101 HOH HOH . G 5 HOH A 103 603 105 HOH HOH . G 5 HOH A 104 604 107 HOH HOH . G 5 HOH A 105 605 108 HOH HOH . G 5 HOH A 106 606 112 HOH HOH . G 5 HOH A 107 607 114 HOH HOH . G 5 HOH A 108 608 115 HOH HOH . G 5 HOH A 109 609 122 HOH HOH . G 5 HOH A 110 610 123 HOH HOH . G 5 HOH A 111 611 126 HOH HOH . G 5 HOH A 112 612 131 HOH HOH . G 5 HOH A 113 613 133 HOH HOH . G 5 HOH A 114 614 143 HOH HOH . G 5 HOH A 115 615 149 HOH HOH . G 5 HOH A 116 616 153 HOH HOH . G 5 HOH A 117 617 160 HOH HOH . G 5 HOH A 118 618 163 HOH HOH . G 5 HOH A 119 619 166 HOH HOH . G 5 HOH A 120 620 167 HOH HOH . G 5 HOH A 121 621 169 HOH HOH . G 5 HOH A 122 622 171 HOH HOH . G 5 HOH A 123 623 174 HOH HOH . G 5 HOH A 124 624 177 HOH HOH . G 5 HOH A 125 625 178 HOH HOH . G 5 HOH A 126 626 179 HOH HOH . G 5 HOH A 127 627 180 HOH HOH . G 5 HOH A 128 628 182 HOH HOH . G 5 HOH A 129 629 184 HOH HOH . G 5 HOH A 130 630 186 HOH HOH . G 5 HOH A 131 631 188 HOH HOH . G 5 HOH A 132 632 191 HOH HOH . G 5 HOH A 133 633 195 HOH HOH . G 5 HOH A 134 634 196 HOH HOH . G 5 HOH A 135 635 198 HOH HOH . G 5 HOH A 136 636 199 HOH HOH . G 5 HOH A 137 637 203 HOH HOH . G 5 HOH A 138 638 206 HOH HOH . G 5 HOH A 139 639 207 HOH HOH . G 5 HOH A 140 640 214 HOH HOH . G 5 HOH A 141 641 223 HOH HOH . G 5 HOH A 142 642 226 HOH HOH . G 5 HOH A 143 643 241 HOH HOH . G 5 HOH A 144 644 243 HOH HOH . G 5 HOH A 145 645 245 HOH HOH . G 5 HOH A 146 646 260 HOH HOH . G 5 HOH A 147 647 267 HOH HOH . G 5 HOH A 148 648 271 HOH HOH . G 5 HOH A 149 649 276 HOH HOH . G 5 HOH A 150 650 284 HOH HOH . G 5 HOH A 151 651 292 HOH HOH . G 5 HOH A 152 652 307 HOH HOH . G 5 HOH A 153 653 323 HOH HOH . G 5 HOH A 154 654 329 HOH HOH . G 5 HOH A 155 655 346 HOH HOH . G 5 HOH A 156 656 364 HOH HOH . G 5 HOH A 157 657 458 HOH HOH . G 5 HOH A 158 658 465 HOH HOH . G 5 HOH A 159 659 504 HOH HOH . G 5 HOH A 160 660 505 HOH HOH . G 5 HOH A 161 661 506 HOH HOH . G 5 HOH A 162 662 507 HOH HOH . G 5 HOH A 163 663 508 HOH HOH . G 5 HOH A 164 664 512 HOH HOH . G 5 HOH A 165 665 513 HOH HOH . G 5 HOH A 166 666 514 HOH HOH . G 5 HOH A 167 667 515 HOH HOH . G 5 HOH A 168 668 520 HOH HOH . G 5 HOH A 169 669 526 HOH HOH . G 5 HOH A 170 670 533 HOH HOH . G 5 HOH A 171 671 539 HOH HOH . G 5 HOH A 172 672 540 HOH HOH . G 5 HOH A 173 673 546 HOH HOH . G 5 HOH A 174 674 554 HOH HOH . G 5 HOH A 175 675 559 HOH HOH . G 5 HOH A 176 676 565 HOH HOH . G 5 HOH A 177 677 571 HOH HOH . G 5 HOH A 178 678 592 HOH HOH . G 5 HOH A 179 679 593 HOH HOH . G 5 HOH A 180 680 596 HOH HOH . G 5 HOH A 181 681 1 HOH HOH . G 5 HOH A 182 682 3 HOH HOH . G 5 HOH A 183 683 4 HOH HOH . G 5 HOH A 184 684 5 HOH HOH . G 5 HOH A 185 685 7 HOH HOH . G 5 HOH A 186 686 8 HOH HOH . G 5 HOH A 187 687 9 HOH HOH . G 5 HOH A 188 688 10 HOH HOH . G 5 HOH A 189 689 12 HOH HOH . G 5 HOH A 190 690 14 HOH HOH . G 5 HOH A 191 691 15 HOH HOH . G 5 HOH A 192 692 18 HOH HOH . G 5 HOH A 193 693 23 HOH HOH . G 5 HOH A 194 694 24 HOH HOH . G 5 HOH A 195 695 25 HOH HOH . G 5 HOH A 196 696 26 HOH HOH . G 5 HOH A 197 697 27 HOH HOH . G 5 HOH A 198 698 28 HOH HOH . G 5 HOH A 199 699 29 HOH HOH . G 5 HOH A 200 700 30 HOH HOH . G 5 HOH A 201 701 32 HOH HOH . G 5 HOH A 202 702 33 HOH HOH . G 5 HOH A 203 703 36 HOH HOH . G 5 HOH A 204 704 44 HOH HOH . G 5 HOH A 205 705 45 HOH HOH . G 5 HOH A 206 706 47 HOH HOH . G 5 HOH A 207 707 49 HOH HOH . G 5 HOH A 208 708 51 HOH HOH . G 5 HOH A 209 709 70 HOH HOH . G 5 HOH A 210 710 72 HOH HOH . G 5 HOH A 211 711 73 HOH HOH . G 5 HOH A 212 712 74 HOH HOH . G 5 HOH A 213 713 75 HOH HOH . G 5 HOH A 214 714 78 HOH HOH . G 5 HOH A 215 715 175 HOH HOH . G 5 HOH A 216 716 177 HOH HOH . G 5 HOH A 217 717 182 HOH HOH . G 5 HOH A 218 718 187 HOH HOH . G 5 HOH A 219 719 1 HOH HOH . G 5 HOH A 220 720 2 HOH HOH . G 5 HOH A 221 721 3 HOH HOH . G 5 HOH A 222 722 4 HOH HOH . G 5 HOH A 223 723 5 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id E _atom_site.label_entity_id 2 _atom_site.Cartn_x 5.015 _atom_site.Cartn_y -23.487 _atom_site.Cartn_z 2.937 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 18.31 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 404 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 315 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #