data_3WBN
#
_model_server_result.job_id            FUOQh16Dia-fvbE89vsHbw 
_model_server_result.datetime_utc      '2024-11-05 00:27:16' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3wbn 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":502}' 
#
_entry.id    3WBN 
#
_exptl.entry_id    3WBN 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              356.54 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' 
_entity.pdbx_number_of_molecules    5 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          91.34 
_cell.angle_gamma         90 
_cell.entry_id            3WBN 
_cell.length_a            152.728 
_cell.length_b            59.828 
_cell.length_c            68.034 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3WBN 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 C N N 
? 3 D N N 
? 3 E N N 
? 3 F N N 
? 3 G N N 
#
_struct_conn.conn_type_id                   covale 
_struct_conn.details                        ? 
_struct_conn.id                             covale1 
_struct_conn.ptnr1_label_asym_id            B 
_struct_conn.ptnr1_label_atom_id            CA 
_struct_conn.ptnr1_label_comp_id            ALA 
_struct_conn.ptnr1_label_seq_id             1 
_struct_conn.ptnr1_auth_asym_id             B 
_struct_conn.ptnr1_auth_comp_id             ALA 
_struct_conn.ptnr1_auth_seq_id              0 
_struct_conn.ptnr1_symmetry                 1_555 
_struct_conn.ptnr2_label_asym_id            B 
_struct_conn.ptnr2_label_atom_id            SG 
_struct_conn.ptnr2_label_comp_id            CYS 
_struct_conn.ptnr2_label_seq_id             18 
_struct_conn.ptnr2_auth_asym_id             B 
_struct_conn.ptnr2_auth_comp_id             CYS 
_struct_conn.ptnr2_auth_seq_id              17 
_struct_conn.ptnr2_symmetry                 1_555 
_struct_conn.pdbx_ptnr1_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr1_label_alt_id        ? 
_struct_conn.pdbx_ptnr1_standard_comp_id    ? 
_struct_conn.pdbx_ptnr2_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr2_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr3_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_label_asym_id       ? 
_struct_conn.pdbx_ptnr3_label_atom_id       ? 
_struct_conn.pdbx_ptnr3_label_comp_id       ? 
_struct_conn.pdbx_ptnr3_label_seq_id        ? 
_struct_conn.pdbx_PDB_id                    ? 
_struct_conn.pdbx_dist_value                1.812 
_struct_conn.pdbx_value_order               ? 
#
_chem_comp.formula           'C21 H40 O4' 
_chem_comp.formula_weight    356.54 
_chem_comp.id                OLC 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     1-Oleoyl-R-glycerol 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C18 C17 OLC sing 237 n n 
C10 C9 OLC doub 238 n n 
C10 C11 OLC sing 239 n n 
C9 C8 OLC sing 240 n n 
C17 C16 OLC sing 241 z n 
C11 C12 OLC sing 242 n n 
C8 C7 OLC sing 243 n n 
C24 C22 OLC sing 244 n n 
C24 O25 OLC sing 245 n n 
C16 C15 OLC sing 246 n n 
C12 C13 OLC sing 247 n n 
C7 C6 OLC sing 248 n n 
C15 C14 OLC sing 249 n n 
C13 C14 OLC sing 250 n n 
C6 C5 OLC sing 251 n n 
C5 C4 OLC sing 252 n n 
C4 C3 OLC sing 253 n n 
C3 C2 OLC sing 254 n n 
C2 C1 OLC sing 255 n n 
C21 C22 OLC sing 256 n n 
C21 O20 OLC sing 257 n n 
C1 O19 OLC doub 258 n n 
C1 O20 OLC sing 259 n n 
C22 O23 OLC sing 260 n n 
C18 H18 OLC sing 261 n n 
C18 H18A OLC sing 262 n n 
C18 H18B OLC sing 263 n n 
C10 H10 OLC sing 264 n n 
C9 H9 OLC sing 265 n n 
C17 H17 OLC sing 266 n n 
C17 H17A OLC sing 267 n n 
C11 H11 OLC sing 268 n n 
C11 H11A OLC sing 269 n n 
C8 H8 OLC sing 270 n n 
C8 H8A OLC sing 271 n n 
C24 H24 OLC sing 272 n n 
C24 H24A OLC sing 273 n n 
C16 H16 OLC sing 274 n n 
C16 H16A OLC sing 275 n n 
C12 H12 OLC sing 276 n n 
C12 H12A OLC sing 277 n n 
C7 H7 OLC sing 278 n n 
C7 H7A OLC sing 279 n n 
C15 H15 OLC sing 280 n n 
C15 H15A OLC sing 281 n n 
C13 H13 OLC sing 282 n n 
C13 H13A OLC sing 283 n n 
C6 H6 OLC sing 284 n n 
C6 H6A OLC sing 285 n n 
C14 H14 OLC sing 286 n n 
C14 H14A OLC sing 287 n n 
C5 H5 OLC sing 288 n n 
C5 H5A OLC sing 289 n n 
C4 H4 OLC sing 290 n n 
C4 H4A OLC sing 291 n n 
C3 H3 OLC sing 292 n n 
C3 H3A OLC sing 293 n n 
C2 H2 OLC sing 294 n n 
C2 H2A OLC sing 295 n n 
C21 H21 OLC sing 296 n n 
C21 H21A OLC sing 297 n n 
C22 H22 OLC sing 298 n n 
O25 HO25 OLC sing 299 n n 
O23 HO23 OLC sing 300 n n 
#
_atom_sites.entry_id                     3WBN 
_atom_sites.fract_transf_matrix[1][1]    0.006548 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000154 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.016715 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.014703 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 OLC A 1 501 1 OLC OLA . 
D 3 OLC A 1 502 2 OLC OLA . 
E 3 OLC A 1 503 3 OLC OLA . 
F 3 OLC A 1 504 4 OLC OLA . 
G 3 OLC A 1 505 5 OLC OLA . 
H 4 HOH A 1 601 1 HOH HOH . 
H 4 HOH A 2 602 2 HOH HOH . 
H 4 HOH A 3 603 3 HOH HOH . 
H 4 HOH A 4 604 4 HOH HOH . 
H 4 HOH A 5 605 5 HOH HOH . 
H 4 HOH A 6 606 6 HOH HOH . 
H 4 HOH A 7 607 7 HOH HOH . 
H 4 HOH A 8 608 8 HOH HOH . 
H 4 HOH A 9 609 9 HOH HOH . 
H 4 HOH A 10 610 10 HOH HOH . 
H 4 HOH A 11 611 11 HOH HOH . 
H 4 HOH A 12 612 12 HOH HOH . 
H 4 HOH A 13 613 13 HOH HOH . 
H 4 HOH A 14 614 15 HOH HOH . 
H 4 HOH A 15 615 16 HOH HOH . 
H 4 HOH A 16 616 18 HOH HOH . 
H 4 HOH A 17 617 19 HOH HOH . 
H 4 HOH A 18 618 20 HOH HOH . 
H 4 HOH A 19 619 21 HOH HOH . 
H 4 HOH A 20 620 22 HOH HOH . 
H 4 HOH A 21 621 23 HOH HOH . 
H 4 HOH A 22 622 24 HOH HOH . 
H 4 HOH A 23 623 25 HOH HOH . 
H 4 HOH A 24 624 26 HOH HOH . 
H 4 HOH A 25 625 27 HOH HOH . 
H 4 HOH A 26 626 29 HOH HOH . 
H 4 HOH A 27 627 30 HOH HOH . 
H 4 HOH A 28 628 31 HOH HOH . 
H 4 HOH A 29 629 33 HOH HOH . 
H 4 HOH A 30 630 34 HOH HOH . 
H 4 HOH A 31 631 35 HOH HOH . 
H 4 HOH A 32 632 36 HOH HOH . 
H 4 HOH A 33 633 38 HOH HOH . 
H 4 HOH A 34 634 39 HOH HOH . 
H 4 HOH A 35 635 40 HOH HOH . 
H 4 HOH A 36 636 42 HOH HOH . 
H 4 HOH A 37 637 44 HOH HOH . 
H 4 HOH A 38 638 45 HOH HOH . 
H 4 HOH A 39 639 46 HOH HOH . 
H 4 HOH A 40 640 49 HOH HOH . 
H 4 HOH A 41 641 50 HOH HOH . 
H 4 HOH A 42 642 51 HOH HOH . 
H 4 HOH A 43 643 52 HOH HOH . 
H 4 HOH A 44 644 54 HOH HOH . 
H 4 HOH A 45 645 55 HOH HOH . 
H 4 HOH A 46 646 56 HOH HOH . 
H 4 HOH A 47 647 57 HOH HOH . 
H 4 HOH A 48 648 59 HOH HOH . 
H 4 HOH A 49 649 62 HOH HOH . 
H 4 HOH A 50 650 64 HOH HOH . 
H 4 HOH A 51 651 66 HOH HOH . 
H 4 HOH A 52 652 71 HOH HOH . 
H 4 HOH A 53 653 74 HOH HOH . 
H 4 HOH A 54 654 77 HOH HOH . 
H 4 HOH A 55 655 82 HOH HOH . 
H 4 HOH A 56 656 84 HOH HOH . 
H 4 HOH A 57 657 87 HOH HOH . 
H 4 HOH A 58 658 90 HOH HOH . 
H 4 HOH A 59 659 92 HOH HOH . 
H 4 HOH A 60 660 93 HOH HOH . 
H 4 HOH A 61 661 94 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C10 OLC . . . D 3 349.441 6.583 25.728 1 43.61 ? C10 OLC 502 A 1 
HETATM 2 C C9 OLC . . . D 3 349.414 7.087 24.345 1 40.56 ? C9 OLC 502 A 1 
HETATM 3 C C17 OLC . . . D 3 350.481 1.291 32.412 1 39.84 ? C17 OLC 502 A 1 
HETATM 4 C C11 OLC . . . D 3 350.017 5.218 26.034 1 45.02 ? C11 OLC 502 A 1 
HETATM 5 C C8 OLC . . . D 3 350.644 6.949 23.477 1 39.21 ? C8 OLC 502 A 1 
HETATM 6 C C16 OLC . . . D 3 349.674 1.943 31.294 1 43.53 ? C16 OLC 502 A 1 
HETATM 7 C C12 OLC . . . D 3 350.147 5.08 27.546 1 47.89 ? C12 OLC 502 A 1 
HETATM 8 C C15 OLC . . . D 3 350.559 2.332 30.114 1 43.92 ? C15 OLC 502 A 1 
HETATM 9 C C13 OLC . . . D 3 350.613 3.694 27.977 1 47.05 ? C13 OLC 502 A 1 
HETATM 10 C C14 OLC . . . D 3 349.784 3.243 29.173 1 45.84 ? C14 OLC 502 A 1 
#
_model_server_stats.io_time_ms              48 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    15 
_model_server_stats.query_time_ms           242 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           10 
#